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Quanjiang Ji, Ph.D. - Publications

Affiliations: 
2014 Chemistry University of Chicago, Chicago, IL 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zhang Y, Zhang H, Wang Z, Wu Z, Wang Y, Tang N, Xu X, Zhao S, Chen W, Ji Q. Programmable adenine deamination in bacteria using a Cas9-adenine-deaminase fusion. Chemical Science. 11: 1657-1664. PMID 32206285 DOI: 10.1039/C9Sc03784E  0.32
2020 Chen W, Ji Q. Genetic Manipulation of MRSA Using CRISPR/Cas9 Technology. Methods in Molecular Biology (Clifton, N.J.). 2069: 113-124. PMID 31523770 DOI: 10.1007/978-1-4939-9849-4_9  0.306
2019 Chen W, Zhang H, Zhang Y, Wang Y, Gan J, Ji Q. Molecular basis for the PAM expansion and fidelity enhancement of an evolved Cas9 nuclease. Plos Biology. 17: e3000496. PMID 31603896 DOI: 10.1371/Journal.Pbio.3000496  0.319
2019 Wang Y, Wang Z, Chen Y, Hua X, Yu Y, Ji Q. A Highly Efficient CRISPR-Cas9-Based Genome Engineering Platform in Acinetobacter baumannii to Understand the HO-Sensing Mechanism of OxyR. Cell Chemical Biology. PMID 31548010 DOI: 10.1016/J.Chembiol.2019.09.003  0.326
2019 Fu T, Liu L, Yang QL, Wang Y, Xu P, Zhang L, Liu S, Dai Q, Ji Q, Xu GL, He C, Luo C, Zhang L. Thymine DNA glycosylase recognizes the geometry alteration of minor grooves induced by 5-formylcytosine and 5-carboxylcytosine. Chemical Science. 10: 7407-7417. PMID 31489163 DOI: 10.1039/C9Sc02807B  0.433
2019 Sun Q, Wang Y, Dong N, Shen L, Zhou H, Hu YY, Gu D, Chen S, Zhang R, Ji Q. The application of CRISPR/Cas9-based genome editing in studying the mechanism of pandrug resistance in . Antimicrobial Agents and Chemotherapy. PMID 30988149 DOI: 10.1128/Aac.00113-19  0.312
2018 Chen W, Zhang Y, Zhang Y, Pi Y, Gu T, Song L, Wang Y, Ji Q. CRISPR/Cas9-based Genome Editing in Pseudomonas aeruginosa and Cytidine Deaminase-Mediated Base Editing in Pseudomonas Species. Iscience. 6: 222-231. PMID 30240613 DOI: 10.1016/J.Isci.2018.07.024  0.318
2018 Wang Y, Wang S, Chen W, Song L, Zhang Y, Shen Z, Yu F, Li M, Ji Q. Precise and efficient genome editing in using CRISPR-Cas9 and CRISPR-assisted cytidine deaminase. Applied and Environmental Microbiology. PMID 30217854 DOI: 10.1128/Aem.01834-18  0.32
2018 Wei W, Zhang Y, Gao R, Li J, Xu Y, Wang S, Ji Q, Feng Y. Crystal structure and acetylation of BioQ suggests a novel regulatory switch for biotin biosynthesis in Mycobacterium smegmatis. Molecular Microbiology. PMID 29995988 DOI: 10.1111/Mmi.14066  0.373
2018 Gu T, Zhao S, Pi Y, Chen W, Chen C, Liu Q, Li M, Han D, Ji Q. Highly efficient base editing in using an engineered CRISPR RNA-guided cytidine deaminase. Chemical Science. 9: 3248-3253. PMID 29780457 DOI: 10.1039/C8Sc00637G  0.306
2017 Chen W, Zhang Y, Yeo WS, Bae T, Ji Q. Rapid and Efficient Genome Editing in Staphylococcus aureus by Using an Engineered CRISPR/Cas9 System. Journal of the American Chemical Society. PMID 28218837 DOI: 10.1021/Jacs.6B13317  0.329
2017 Ji Q, Chen PJ, Qin G, Deng X, Hao Z, Wawrzak Z, Yeo WS, Quang JW, Cho H, Luo GZ, Weng X, You Q, Luan CH, Yang X, Bae T, et al. Retraction: Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus. Nature Communications. 8: 14331. PMID 28165458 DOI: 10.1038/Ncomms14331  0.427
2016 Ji Q, He C. Extracorporeal shockwave therapy promotes chondrogenesis in cartilage tissue engineering: A hypothesis based on previous evidence. Medical Hypotheses. 91: 9-15. PMID 27142133 DOI: 10.1016/j.mehy.2016.03.013  0.339
2016 Ji Q, Chen PJ, Qin G, Deng X, Hao Z, Wawrzak Z, Yeo WS, Quang JW, Cho H, Luo GZ, Weng X, You Q, Luan CH, Yang X, Bae T, et al. Structure and mechanism of the essential two-component signal-transduction system WalKR in Staphylococcus aureus. Nature Communications. 7: 11000. PMID 26987594 DOI: 10.1038/Ncomms11000  0.469
2015 Lin R, Elf S, Shan C, Kang HB, Ji Q, Zhou L, Hitosugi T, Zhang L, Zhang S, Seo JH, Xie J, Tucker M, Gu TL, Sudderth J, Jiang L, et al. 6-Phosphogluconate dehydrogenase links oxidative PPP, lipogenesis and tumour growth by inhibiting LKB1-AMPK signalling. Nature Cell Biology. PMID 26479318 DOI: 10.1038/Ncb3255  0.499
2015 Kang HB, Fan J, Lin R, Elf S, Ji Q, Zhao L, Jin L, Seo JH, Shan C, Arbiser JL, Cohen C, Brat D, Miziorko HM, Kim E, Abdel-Wahab O, et al. Metabolic Rewiring by Oncogenic BRAF V600E Links Ketogenesis Pathway to BRAF-MEK1 Signaling. Molecular Cell. PMID 26145173 DOI: 10.1016/J.Molcel.2015.05.037  0.456
2015 Deng X, Chen K, Luo GZ, Weng X, Ji Q, Zhou T, He C. Widespread occurrence of N6-methyladenosine in bacterial mRNA. Nucleic Acids Research. 43: 6557-67. PMID 26068471 DOI: 10.1093/Nar/Gkv596  0.415
2015 Fu Y, Luo GZ, Chen K, Deng X, Yu M, Han D, Hao Z, Liu J, Lu X, Doré LC, Weng X, Ji Q, Mets L, He C. N6-methyldeoxyadenosine marks active transcription start sites in chlamydomonas. Cell. 161: 879-92. PMID 25936837 DOI: 10.1016/J.Cell.2015.04.010  0.564
2014 Shan C, Elf S, Ji Q, Kang HB, Zhou L, Hitosugi T, Jin L, Lin R, Zhang L, Seo JH, Xie J, Tucker M, Gu TL, Sudderth J, Jiang L, et al. Lysine acetylation activates 6-phosphogluconate dehydrogenase to promote tumor growth. Molecular Cell. 55: 552-65. PMID 25042803 DOI: 10.1016/J.Molcel.2014.06.020  0.488
2014 Deng X, Liang H, Ulanovskaya OA, Ji Q, Zhou T, Sun F, Lu Z, Hutchison AL, Lan L, Wu M, Cravatt BF, He C. Steady-state hydrogen peroxide induces glycolysis in Staphylococcus aureus and Pseudomonas aeruginosa. Journal of Bacteriology. 196: 2499-513. PMID 24769698 DOI: 10.1128/Jb.01538-14  0.562
2014 Chen W, Zhang L, Zheng G, Fu Y, Ji Q, Liu F, Chen H, He C. Crystal structure of the RNA demethylase ALKBH5 from zebrafish. Febs Letters. 588: 892-8. PMID 24561204 DOI: 10.1016/J.Febslet.2014.02.021  0.602
2013 Ji Q, Zhao BS, He C. A highly sensitive and genetically encoded fluorescent reporter for ratiometric monitoring of quinones in living cells. Chemical Communications (Cambridge, England). 49: 8027-9. PMID 23903292 DOI: 10.1039/C3Cc44534H  0.609
2013 Deng X, Weerapana E, Ulanovskaya O, Sun F, Liang H, Ji Q, Ye Y, Fu Y, Zhou L, Li J, Zhang H, Wang C, Alvarez S, Hicks LM, Lan L, et al. Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria. Cell Host & Microbe. 13: 358-70. PMID 23498960 DOI: 10.1016/J.Chom.2013.02.004  0.625
2013 Ji Q, Zhang L, Jones MB, Sun F, Deng X, Liang H, Cho H, Brugarolas P, Gao YN, Peterson SN, Lan L, Bae T, He C. Molecular mechanism of quinone signaling mediated through S-quinonization of a YodB family repressor QsrR. Proceedings of the National Academy of Sciences of the United States of America. 110: 5010-5. PMID 23479646 DOI: 10.1073/Pnas.1219446110  0.564
2013 Liang H, Deng X, Bosscher M, Ji Q, Jensen MP, He C. Engineering bacterial two-component system PmrA/PmrB to sense lanthanide ions. Journal of the American Chemical Society. 135: 2037-9. PMID 23350529 DOI: 10.1021/Ja312032C  0.69
2012 Sun F, Ding Y, Ji Q, Liang Z, Deng X, Wong CC, Yi C, Zhang L, Xie S, Alvarez S, Hicks LM, Luo C, Jiang H, Lan L, He C. Protein cysteine phosphorylation of SarA/MgrA family transcriptional regulators mediates bacterial virulence and antibiotic resistance. Proceedings of the National Academy of Sciences of the United States of America. 109: 15461-6. PMID 22927394 DOI: 10.1073/Pnas.1205952109  0.619
2012 Jeong DW, Cho H, Jones MB, Shatzkes K, Sun F, Ji Q, Liu Q, Peterson SN, He C, Bae T. The auxiliary protein complex SaePQ activates the phosphatase activity of sensor kinase SaeS in the SaeRS two-component system of Staphylococcus aureus. Molecular Microbiology. 86: 331-48. PMID 22882143 DOI: 10.1111/J.1365-2958.2012.08198.X  0.537
2012 Sun F, Liang H, Kong X, Xie S, Cho H, Deng X, Ji Q, Zhang H, Alvarez S, Hicks LM, Bae T, Luo C, Jiang H, He C. Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA. Proceedings of the National Academy of Sciences of the United States of America. 109: 9095-100. PMID 22586129 DOI: 10.1073/Pnas.1200603109  0.55
2012 Ji Q, Zhang L, Sun F, Deng X, Liang H, Bae T, He C. Staphylococcus aureus CymR is a new thiol-based oxidation-sensing regulator of stress resistance and oxidative response. The Journal of Biological Chemistry. 287: 21102-9. PMID 22553203 DOI: 10.1074/Jbc.M112.359737  0.531
2012 Liang H, Deng X, Ji Q, Sun F, Shen T, He C. The Pseudomonas aeruginosa global regulator VqsR directly inhibits QscR to control quorum-sensing and virulence gene expression. Journal of Bacteriology. 194: 3098-108. PMID 22505688 DOI: 10.1128/Jb.06679-11  0.547
2012 Deng X, Sun F, Ji Q, Liang H, Missiakas D, Lan L, He C. Expression of multidrug resistance efflux pump gene norA is iron responsive in Staphylococcus aureus. Journal of Bacteriology. 194: 1753-62. PMID 22267518 DOI: 10.1128/Jb.06582-11  0.56
2012 Sun F, Ji Q, Jones MB, Deng X, Liang H, Frank B, Telser J, Peterson SN, Bae T, He C. AirSR, a [2Fe-2S] cluster-containing two-component system, mediates global oxygen sensing and redox signaling in Staphylococcus aureus. Journal of the American Chemical Society. 134: 305-14. PMID 22122613 DOI: 10.1021/Ja2071835  0.507
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