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Xiao-jiang Feng, Ph.D. - Publications

Affiliations: 
2005 Princeton University, Princeton, NJ 
Area:
theoretical chemistry
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28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Tibbetts KM, Feng XJ, Rabitz H. Exploring experimental fitness landscapes for chemical synthesis and property optimization. Physical Chemistry Chemical Physics : Pccp. PMID 28116365 DOI: 10.1039/C6Cp06187G  0.557
2012 Miller MA, Feng XJ, Li G, Rabitz HA. Identifying biological network structure, predicting network behavior, and classifying network state with High Dimensional Model Representation (HDMR). Plos One. 7: e37664. PMID 22723838 DOI: 10.1371/Journal.Pone.0037664  0.426
2012 Feng X, Sanchis J, Reetz MT, Rabitz H. Enhancing the efficiency of directed evolution in focused enzyme libraries by the adaptive substituent reordering algorithm Chemistry - a European Journal. 18: 5646-5654. PMID 22434591 DOI: 10.1002/Chem.201103811  0.49
2012 Feng X, Pechen A, Jha A, Wu R, Rabitz H. Global optimality of fitness landscapes in evolution Chemical Science. 3: 900-906. DOI: 10.1039/C1Sc00648G  0.555
2012 Izmailov S, Feng X, Li G, Rabitz H. A scalable algorithm for molecular property estimation in high dimensional scaffold-based libraries Journal of Mathematical Chemistry. 50: 1765-1790. DOI: 10.1007/S10910-012-0005-Y  0.47
2011 Moore KW, Pechen A, Feng XJ, Dominy J, Beltrani VJ, Rabitz H. Why is chemical synthesis and property optimization easier than expected? Physical Chemistry Chemical Physics : Pccp. 13: 10048-70. PMID 21483988 DOI: 10.1039/C1Cp20353C  0.664
2011 Moore KW, Pechen A, Feng XJ, Dominy J, Beltrani V, Rabitz H. Universal characteristics of chemical synthesis and property optimization Chemical Science. 2: 417-424. DOI: 10.1039/C0Sc00425A  0.662
2010 Lemons JM, Feng XJ, Bennett BD, Legesse-Miller A, Johnson EL, Raitman I, Pollina EA, Rabitz HA, Rabinowitz JD, Coller HA. Quiescent fibroblasts exhibit high metabolic activity. Plos Biology. 8: e1000514. PMID 21049082 DOI: 10.1371/Journal.Pbio.1000514  0.407
2010 Amador-Noguez D, Feng XJ, Fan J, Roquet N, Rabitz H, Rabinowitz JD. Systems-level metabolic flux profiling elucidates a complete, bifurcated tricarboxylic acid cycle in Clostridium acetobutylicum. Journal of Bacteriology. 192: 4452-61. PMID 20622067 DOI: 10.1128/Jb.00490-10  0.316
2010 Dimaggio PA, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA. A network flow model for biclustering via optimal re-ordering of data matrices Journal of Global Optimization. 47: 343-354. DOI: 10.1007/S10898-008-9349-Z  0.482
2010 DiMaggio PA, McAllister SR, Floudas CA, Feng XJ, Li G, Rabinowitz JD, Rabitz HA. Enhancing molecular discovery using descriptor-free rearrangement clustering techniques for sparse data sets Aiche Journal. 56: 405-418. DOI: 10.1002/Aic.11986  0.467
2009 Miller M, Feng X, Li G, Rabitz H. Nonlinear bionetwork structure inference using the random sampling-high dimensional model representation (RS-HDMR) algorithm Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Conference. 6412-6415. PMID 19964421 DOI: 10.1109/IEMBS.2009.5333798  0.359
2009 Yuan J, Doucette CD, Fowler WU, Feng XJ, Piazza M, Rabitz HA, Wingreen NS, Rabinowitz JD. Metabolomics-driven quantitative analysis of ammonia assimilation in E. coli. Molecular Systems Biology. 5: 302. PMID 19690571 DOI: 10.1038/Msb.2009.60  0.345
2008 DiMaggio PA, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA. Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies. Bmc Bioinformatics. 9: 458. PMID 18954459 DOI: 10.1186/1471-2105-9-458  0.392
2008 McAllister SR, Feng XJ, DiMaggio PA, Floudas CA, Rabinowitz JD, Rabitz H. Descriptor-free molecular discovery in large libraries by adaptive substituent reordering. Bioorganic & Medicinal Chemistry Letters. 18: 5967-70. PMID 18851908 DOI: 10.1016/J.Bmcl.2008.09.068  0.486
2008 Munger J, Bennett BD, Parikh A, Feng XJ, McArdle J, Rabitz HA, Shenk T, Rabinowitz JD. Systems-level metabolic flux profiling identifies fatty acid synthesis as a target for antiviral therapy. Nature Biotechnology. 26: 1179-86. PMID 18820684 DOI: 10.1038/Nbt.1500  0.4
2008 Rabinowitz JD, Hsiao JJ, Gryncel KR, Kantrowitz ER, Feng XJ, Li G, Rabitz H. Dissecting enzyme regulation by multiple allosteric effectors: nucleotide regulation of aspartate transcarbamoylase. Biochemistry. 47: 5881-8. PMID 18454556 DOI: 10.1021/Bi8000566  0.413
2008 Piazza M, Feng XJ, Rabinowitz JD, Rabitz H. Diverse metabolic model parameters generate similar methionine cycle dynamics. Journal of Theoretical Biology. 251: 628-39. PMID 18313076 DOI: 10.1016/J.Jtbi.2007.12.009  0.428
2008 Dimaggio PA, Mcallister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA. Optimal methods for re-ordering data matrices in systems biology and drug discovery applications Biophysical Reviews and Letters. 3: 19-42. DOI: 10.1142/S1793048008000605  0.415
2008 Feng X, Rabinowitz J, Rabitz H. Development of laboratory and computational techniques for optimal and quantitative understanding of cellular metabolic networks Ipdps Miami 2008 - Proceedings of the 22nd Ieee International Parallel and Distributed Processing Symposium, Program and Cd-Rom. DOI: 10.1109/IPDPS.2008.4536416  0.408
2008 DiMaggio PA, McAllister SR, Floudas CA, Feng XJ, Rabinowitz JD, Rabitz HA. Biclustering of data matrices in systems biology via optimal re-ordering Computer Aided Chemical Engineering. 25: 569-574. DOI: 10.1016/S1570-7946(08)80100-9  0.475
2007 Feng XJ, Shea-Brown E, Greenwald B, Kosut R, Rabitz H. Optimal deep brain stimulation of the subthalamic nucleus--a computational study. Journal of Computational Neuroscience. 23: 265-82. PMID 17484043 DOI: 10.1007/S10827-007-0031-0  0.37
2007 Feng XJ, Greenwald B, Rabitz H, Shea-Brown E, Kosut R. Toward closed-loop optimization of deep brain stimulation for Parkinson's disease: concepts and lessons from a computational model. Journal of Neural Engineering. 4: L14-21. PMID 17409470 DOI: 10.1088/1741-2560/4/2/L03  0.396
2006 Feng XJ, Rabitz H, Turinici G, Le Bris C. A closed-loop identification protocol for nonlinear dynamical systems. The Journal of Physical Chemistry. A. 110: 7755-62. PMID 16789759 DOI: 10.1021/Jp056189O  0.424
2005 Liang F, Feng XJ, Lowry M, Rabitz H. Maximal use of minimal libraries through the adaptive substituent reordering algorithm. The Journal of Physical Chemistry. B. 109: 5842-54. PMID 16851637 DOI: 10.1021/Jp045926Y  0.522
2004 Ku J, Feng XJ, Rabitz H. Closed-loop learning control of bio-networks. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 11: 642-59. PMID 15579236 DOI: 10.1089/Cmb.2004.11.642  0.356
2004 Feng XJ, Hooshangi S, Chen D, Li G, Weiss R, Rabitz H. Optimizing genetic circuits by global sensitivity analysis. Biophysical Journal. 87: 2195-202. PMID 15454422 DOI: 10.1529/Biophysj.104.044131  0.502
2004 Feng XJ, Rabitz H. Optimal identification of biochemical reaction networks. Biophysical Journal. 86: 1270-81. PMID 14990460 DOI: 10.1016/S0006-3495(04)74201-0  0.442
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