Year |
Citation |
Score |
2020 |
Sankararaman A, Vikalo H, Baccelli F. ComHapDet: a spatial community detection algorithm for haplotype assembly. Bmc Genomics. 21: 586. PMID 32900369 DOI: 10.1186/S12864-020-06935-X |
0.341 |
|
2019 |
Barik S, Vikalo H. Matrix Completion and Performance Guarantees for Single Individual Haplotyping Ieee Transactions On Signal Processing. 67: 4782-4794. DOI: 10.1109/Tsp.2019.2931207 |
0.363 |
|
2018 |
Hassibi A, Manickam A, Singh R, Bolouki S, Sinha R, Jirage KB, McDermott MW, Hassibi B, Vikalo H, Mazarei G, Pei L, Bousse L, Miller M, Heshami M, Savage MP, et al. Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip. Nature Biotechnology. PMID 30010676 DOI: 10.1038/Nbt.4179 |
0.569 |
|
2018 |
Hashemi A, Vikalo H. Evolutionary Self-Expressive Models for Subspace Clustering Ieee Journal of Selected Topics in Signal Processing. 12: 1534-1546. DOI: 10.1109/Jstsp.2018.2877478 |
0.309 |
|
2018 |
Yang H, Chun J, Vikalo H. Cyclic block coordinate minimization algorithms for DOA estimation in co-prime arrays Signal Processing. 145: 272-284. DOI: 10.1016/J.Sigpro.2017.12.005 |
0.395 |
|
2018 |
Hashemi A, Vikalo H. Accelerated orthogonal least-squares for large-scale sparse reconstruction Digital Signal Processing. 82: 91-105. DOI: 10.1016/J.Dsp.2018.07.010 |
0.382 |
|
2017 |
Das S, Vikalo H. Optimal Haplotype Assembly via a Branch-and-Bound Algorithm Ieee Transactions On Molecular, Biological and Multi-Scale Communications. 3: 1-12. DOI: 10.1109/Tmbmc.2016.2640306 |
0.384 |
|
2017 |
Si H, Vikalo H, Vishwanath S. Information-Theoretic Analysis of Haplotype Assembly Ieee Transactions On Information Theory. 63: 3468-3479. DOI: 10.1109/Tit.2017.2686884 |
0.393 |
|
2016 |
O'Reilly E, Baccelli F, De Veciana G, Vikalo H. End-to-End Optimization of High-Throughput DNA Sequencing. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. PMID 27387090 DOI: 10.1089/Cmb.2015.0185 |
0.359 |
|
2016 |
Puljiz Z, Vikalo H. Decoding Genetic Variations: Communications-Inspired Haplotype Assembly. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 13: 518-30. PMID 27295635 DOI: 10.1109/Tcbb.2015.2462367 |
0.386 |
|
2016 |
Cai C, Sanghavi S, Vikalo H. Structured Low-Rank Matrix Factorization for Haplotype Assembly Ieee Journal On Selected Topics in Signal Processing. 10: 647-657. DOI: 10.1109/Jstsp.2016.2547860 |
0.316 |
|
2015 |
Arzeno NM, Vikalo H. Semi-Supervised Affinity Propagation with Soft Instance-Level Constraints. Ieee Transactions On Pattern Analysis and Machine Intelligence. 37: 1041-52. PMID 26353327 DOI: 10.1109/Tpami.2014.2359454 |
0.337 |
|
2015 |
Ahn S, Vikalo H. Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm. Bmc Bioinformatics. 16: 223. PMID 26178880 DOI: 10.1186/S12859-015-0651-8 |
0.308 |
|
2014 |
Shen X, Shamaiah M, Vikalo H. Iterative Learning for Reference-Guided DNA Sequence Assembly from Short Reads: Algorithms and Limits of Performance Ieee Transactions On Signal Processing. 62: 4425-4435. DOI: 10.1109/Tsp.2014.2333564 |
0.397 |
|
2014 |
Barik S, Vikalo H. Sparsity-aware sphere decoding: Algorithms and complexity analysis Ieee Transactions On Signal Processing. 62: 2212-2225. DOI: 10.1109/Tsp.2014.2307836 |
0.445 |
|
2013 |
Das S, Vikalo H. Base calling for high-throughput short-read sequencing: dynamic programming solutions. Bmc Bioinformatics. 14: 129. PMID 23586484 DOI: 10.1186/1471-2105-14-129 |
0.362 |
|
2013 |
Lee SH, Shamaiah M, Vikalo H, Vishwanath S. Message-passing algorithms for coordinated spectrum sensing in cognitive radio networks Ieee Communications Letters. 17: 812-815. DOI: 10.1109/Lcomm.2013.021913.130013 |
0.335 |
|
2013 |
Barik S, Vikalo H. Expected complexity of sphere decoding for sparse integer least-square problems Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4668-4672. DOI: 10.1109/ICASSP.2013.6638545 |
0.325 |
|
2012 |
Shen X, Vikalo H. ParticleCall: a particle filter for base calling in next-generation sequencing systems. Bmc Bioinformatics. 13: 160. PMID 22776067 DOI: 10.1186/1471-2105-13-160 |
0.356 |
|
2012 |
Das S, Vikalo H. OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing. Bioinformatics (Oxford, England). 28: 1677-83. PMID 22569177 DOI: 10.1093/Bioinformatics/Bts256 |
0.367 |
|
2012 |
Hassibi A, Vikalo H, Riechmann JL, Hassibi B. FRET-based real-time DNA microarrays. Methods in Molecular Biology (Clifton, N.J.). 815: 147-59. PMID 22130990 DOI: 10.1007/978-1-61779-424-7_12 |
0.627 |
|
2012 |
Shamaiah M, Banerjee S, Vikalo H. Greedy sensor selection under channel uncertainty Ieee Wireless Communications Letters. 1: 376-379. DOI: 10.1109/Wcl.2012.053112.120229 |
0.328 |
|
2012 |
Wu T, Vikalo H. Joint parameter estimation and base-calling for pyrosequencing systems Ieee Transactions On Signal Processing. 60: 4376-4386. DOI: 10.1109/Tsp.2012.2197616 |
0.433 |
|
2012 |
Shamaiah M, Shen X, Vikalo H. Estimating parameters of sampled diffusion processes in affinity biosensors Ieee Transactions On Signal Processing. 60: 3228-3239. DOI: 10.1109/Tsp.2012.2190596 |
0.388 |
|
2011 |
Shamaiah M, Vikalo H. Estimating time-varying sparse signals under communication constraints Ieee Transactions On Signal Processing. 59: 2961-2964. DOI: 10.1109/Tsp.2011.2128312 |
0.357 |
|
2010 |
Vikalo H, Gokdemir M. An MCMC algorithm for target estimation in real-time DNA microarrays Eurasip Journal On Advances in Signal Processing. 2010. DOI: 10.1155/2010/736301 |
0.425 |
|
2010 |
Shen X, Vikalo H. Inferring parameters of gene regulatory networks via particle filtering Eurasip Journal On Advances in Signal Processing. 2010. DOI: 10.1155/2010/204612 |
0.313 |
|
2010 |
Vikalo H, Hassibi B, Hassibi A. Limits of performance of quantitative polymerase chain reaction systems Ieee Transactions On Information Theory. 56: 688-695. DOI: 10.1109/Tit.2009.2037088 |
0.65 |
|
2010 |
Wu T, Vikalo H. Maximum likelihood DNA sequence detection via sphere decoding Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 586-589. DOI: 10.1109/ICASSP.2010.5495564 |
0.306 |
|
2010 |
Lee SH, Shamaiah M, Vikalo H. Optimal estimation in DNA microarrays via global optimization Conference Record - Asilomar Conference On Signals, Systems and Computers. 1765-1769. DOI: 10.1109/ACSSC.2010.5757844 |
0.32 |
|
2009 |
Hassibi A, Vikalo H, Riechmann JL, Hassibi B. Real-time DNA microarray analysis. Nucleic Acids Research. 37: e132. PMID 19723688 DOI: 10.1093/Nar/Gkp675 |
0.633 |
|
2009 |
El-Khamy M, Vikalo H, Hassibi B, McEliece RJ. Performance of sphere decoding of block codes Ieee Transactions On Communications. 57: 2940-2950. DOI: 10.1109/Tcomm.2009.10.080402 |
0.596 |
|
2009 |
Gokdemir M, Vikalo H. A particle filtering algorithm for parameter estimation in real-time biosensor arrays 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174364 |
0.301 |
|
2009 |
Das S, Vikalo H, Hassibi A. On scaling laws of biosensors: A stochastic approach Journal of Applied Physics. 105. DOI: 10.1063/1.3116125 |
0.309 |
|
2008 |
Stojnic M, Vikalo H, Hassibi B. Speeding up the sphere decoder with H∞ and SDP inspired lower bounds Ieee Transactions On Signal Processing. 56: 712-726. DOI: 10.1109/Tsp.2007.906697 |
0.636 |
|
2008 |
Parvaresh F, Vikalo H, Misra S, Hassibi B. Recovering sparse signals using sparse measurement matrices in compressed DNA microarrays Ieee Journal On Selected Topics in Signal Processing. 2: 275-285. DOI: 10.1109/Jstsp.2008.924384 |
0.634 |
|
2008 |
Vikalo H, Hassibi B, Hassibi A. Modeling and estimation for real-time microarrays Ieee Journal On Selected Topics in Signal Processing. 2: 286-296. DOI: 10.1109/Jstsp.2008.924383 |
0.673 |
|
2008 |
Vikalo H, Hassibi B, Hassibia A. On estimation in real-time microarrays Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 577-580. DOI: 10.1109/ICASSP.2008.4517675 |
0.625 |
|
2008 |
Vikalo H, Hassibi A. Estimation in real-time affinity-based biosensors Conference Record - Asilomar Conference On Signals, Systems and Computers. 1919-1922. DOI: 10.1109/ACSSC.2008.5074763 |
0.301 |
|
2007 |
Stojnic M, Hassibi B, Vikalo H. PEP analysis of SDP-based non-coherent signal detection Ieee International Symposium On Information Theory - Proceedings. 2916-2920. DOI: 10.1109/ISIT.2007.4557661 |
0.385 |
|
2007 |
Vikalo H, Hassibi B, Hassibi A. ML estimation of DNA initial copy number in polymerase chain reaction (PCR) processes Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 1: I417-I420. DOI: 10.1109/ICASSP.2007.366705 |
0.614 |
|
2007 |
Stojnic M, Hassibi B, Vikalo H. PEP analysis of the SDP based joint channel estimation and signal detection Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: III69-III72. DOI: 10.1109/ICASSP.2007.366474 |
0.385 |
|
2007 |
Vikalo H, Hassibi B, Stojnic M, Hassibi A. Modeling the kinetics of hybridization in microarrays Gensips'07 - 5th Ieee International Workshop On Genomic Signal Processing and Statistics. DOI: 10.1109/GENSIPS.2007.4365828 |
0.63 |
|
2007 |
Vikalo H, Hassibi B, Hassibi A. Signal processing aspects of real-time DNA microarrays 2007 2nd Ieee International Workshop On Computational Advances in Multi-Sensor Adaptive Processing, Campsap. 165-168. DOI: 10.1109/CAMSAP.2007.4497991 |
0.621 |
|
2007 |
Vikalo H, Hassibi B, Hassibi A. Signal processing for real-time DNA microarrays Conference Record - Asilomar Conference On Signals, Systems and Computers. 170-174. DOI: 10.1109/ACSSC.2007.4487188 |
0.626 |
|
2007 |
Hassibi A, Vikalo H, Hajimiri A. On noise processes and limits of performance in biosensors Journal of Applied Physics. 102. DOI: 10.1063/1.2748624 |
0.347 |
|
2006 |
Stojnic M, Vikalo H, Hassibi B. Rate maximization in multi-antenna broadcast channels with linear preprocessing Ieee Transactions On Wireless Communications. 5: 2338-2342. DOI: 10.1109/Twc.2006.1687754 |
0.62 |
|
2006 |
Vikalo H, Hassibi B, Stoica P. Efficient joint maximum-likelihood channel estimation and signal detection Ieee Transactions On Wireless Communications. 5: 1838-1845. DOI: 10.1109/Twc.2006.1673095 |
0.653 |
|
2006 |
Vikalo H, Hassibi B. On joint detection and decoding of linear block codes on gaussian vector channels Ieee Transactions On Signal Processing. 54: 3330-3342. DOI: 10.1109/Tsp.2006.877675 |
0.658 |
|
2006 |
Vikalo H, Hassibi B, Hassibi A. A statistical model for microarrays, optimal estimation algorithms, and limits of performance Ieee Transactions On Signal Processing. 54: 2444-2455. DOI: 10.1109/Tsp.2006.873716 |
0.658 |
|
2006 |
Vikalo H, Hassibi B, Mitra U. Sphere-constrained ML detection for frequency-selective channels Ieee Transactions On Communications. 54: 1179-1183. DOI: 10.1109/Tcomm.2006.877946 |
0.649 |
|
2006 |
Vikalo H, Hassibi B, Hassibi A. On joint maximum-likelihood estimation of PCR efficiency and initial amount of target 2006 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2006. 47-48. DOI: 10.1109/GENSIPS.2006.353149 |
0.594 |
|
2006 |
Kailath T, Vikalo H, Hassibi B. MIMO receive algorithms Space-Time Wireless Systems: From Array Processing to Mimo Communications. 302-321. DOI: 10.1017/CBO9780511616815.016 |
0.444 |
|
2006 |
Vikalo H, Hassibi B, Hassibi A. On limits of performance of DNA microarrays Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2: II1012-II1015. |
0.598 |
|
2005 |
Stojnic M, Vikalo H, Hassibi B. Invited paper: An efficient H∞ estimation approach to speed up the sphere decoder 2005 International Conference On Wireless Networks, Communications and Mobile Computing. 2: 1483-1488. DOI: 10.1109/WIRLES.2005.1549632 |
0.308 |
|
2005 |
Hassibi B, Vikalo H. On the sphere-decoding algorithm I. Expected complexity Ieee Transactions On Signal Processing. 53: 2806-2818. DOI: 10.1109/Tsp.2005.850352 |
0.634 |
|
2005 |
Vikalo H, Hassibi B. On the sphere-decoding algorithm II. Generalizations, second-order statistics, and applications to communications Ieee Transactions On Signal Processing. 53: 2819-2834. DOI: 10.1109/Tsp.2005.850350 |
0.644 |
|
2005 |
Stojnic M, Vikalo H, Hassibi B. An H-infinity based lower bound to speed up the sphere decoder Ieee Workshop On Signal Processing Advances in Wireless Communications, Spawc. 2005: 751-755. DOI: 10.1109/SPAWC.2005.1506240 |
0.321 |
|
2005 |
Vikalo H, Hassibi B, Erdogan AT, Kailath T. On robust signal reconstruction in noisy filter banks Signal Processing. 85: 1-14. DOI: 10.1016/J.Sigpro.2004.08.011 |
0.649 |
|
2004 |
Vikalo H, Hassibi B, Kailath T. Iterative decoding for MIMO channels via modified sphere decoding Ieee Transactions On Wireless Communications. 3: 2299-2311. DOI: 10.1109/Twc.2004.837271 |
0.711 |
|
2004 |
Vikalo H, Hassibi B, Hochwald B, Kailath T. On the capacity of frequency-selective channels in training-based transmission schemes Ieee Transactions On Signal Processing. 52: 2572-2583. DOI: 10.1109/Tsp.2004.832020 |
0.65 |
|
2003 |
Stoica P, Vikalo H, Hassibi B. Joint maximum-likelihood channel estimation and signal detection for SIMO channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 13-16. |
0.314 |
|
2003 |
Vikalo H, Hassibi B. On joint ML detection and decoding for linear block codes Ieee International Symposium On Information Theory - Proceedings. 275. |
0.333 |
|
2003 |
Vikalo H, Hassibi B, Mitra U. Sphere-constrained ML detection for channels with memory Conference Record of the Asilomar Conference On Signals, Systems and Computers. 1: 672-676. |
0.312 |
|
2002 |
Vikalo H, Hassibi B. Maximum-likelihood sequence detection of multiple antenna systems over dispersive channels via sphere decoding Eurasip Journal On Applied Signal Processing. 2002: 525-531. DOI: 10.1155/S1110865702204011 |
0.639 |
|
2002 |
Vikalo H, Hassibi B. Towards closing the capacity gap on multiple antenna channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: III/2385-III/2388. |
0.322 |
|
2001 |
Vikalo H, Hassibi B, Hochwald B, Kailath T. Optimal training for frequency-selective fading channels Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 2105-2108. |
0.419 |
|
2000 |
Vikalo H, Erdogan AT, Hassibi B, Kailath T. Exponential-quadratic optimal signal reconstruction in noisy filter banks Proceedings of Spie - the International Society For Optical Engineering. 4119: 1020-1028. DOI: 10.1117/12.408589 |
0.428 |
|
2000 |
Mudulodu S, Vikalo H, Paulraj A, Kailath T. CDMA multiuser detection based on state-space estimation techniques Conference Record of the Asilomar Conference On Signals, Systems and Computers. 2: 1278-1282. |
0.454 |
|
2000 |
Vikalo H, Hassibi B, Kailath T. On robust multiuser detection Conference Record of the Asilomar Conference On Signals, Systems and Computers. 2: 1168-1172. |
0.434 |
|
1999 |
Vikalo H, Hassibi B, Kailath T. On H∞ optimal signal reconstruction in noisy filter banks Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 3: 1493-1496. |
0.422 |
|
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