| Year |
Citation |
Score |
| 2021 |
Zhu K, Cai L, Cui C, de Los Toyos JR, Anastassiou D. Single-cell analysis reveals the pan-cancer invasiveness-associated transition of adipose-derived stromal cells into COL11A1-expressing cancer-associated fibroblasts. Plos Computational Biology. 17: e1009228. PMID 34283835 DOI: 10.1371/journal.pcbi.1009228 |
0.358 |
|
| 2020 |
Wang G, Anastassiou D. Pan-cancer driver copy number alterations identified by joint expression/CNA data analysis. Scientific Reports. 10: 17199. PMID 33057153 DOI: 10.1038/s41598-020-74276-6 |
0.338 |
|
| 2020 |
Zhu K, Anastassiou D. 2DImpute: Imputation in Single Cell RNA-Seq Data from Correlations in Two Dimensions. Bioinformatics (Oxford, England). PMID 32108864 DOI: 10.1093/Bioinformatics/Btaa148 |
0.307 |
|
| 2020 |
Ogundijo OE, Zhu K, Wang X, Anastassiou D. Characterizing intra-tumor heterogeneity from somatic mutations without copy-neutral assumption. Ieee/Acm Transactions On Computational Biology and Bioinformatics. PMID 32070995 DOI: 10.1109/Tcbb.2020.2973635 |
0.348 |
|
| 2020 |
Salcedo A, Tarabichi M, Espiritu SMG, Deshwar AG, David M, Wilson NM, Dentro S, Wintersinger JA, Liu LY, Ko M, Sivanandan S, Zhang H, Zhu K, Ou Yang TH, Chilton JM, ... ... Anastassiou D, et al. A community effort to create standards for evaluating tumor subclonal reconstruction. Nature Biotechnology. 38: 97-107. PMID 31919445 DOI: 10.1038/S41587-019-0364-Z |
0.318 |
|
| 2019 |
Ogundijo OE, Zhu K, Wang X, Anastassiou D. A sequential Monte Carlo algorithm for inference of subclonal structure in cancer. Plos One. 14: e0211213. PMID 30682127 DOI: 10.1371/Journal.Pone.0211213 |
0.389 |
|
| 2018 |
Thorsson V, Gibbs DL, Brown SD, Wolf D, Bortone DS, Ou Yang TH, Porta-Pardo E, Gao GF, Plaisier CL, Eddy JA, Ziv E, Culhane AC, Paull EO, Sivakumar IKA, Gentles AJ, ... ... Anastassiou D, et al. The Immune Landscape of Cancer. Immunity. PMID 29628290 DOI: 10.1016/J.Immuni.2018.03.023 |
0.364 |
|
| 2017 |
Anastassiou D. Comment on "A COL11A1-correlated pan-cancer gene signature of activated fibroblasts for the prioritization of therapeutic targets," Cancer Lett. 2016 Nov 28; 382 (2): 203-214. Cancer Letters. PMID 28192213 DOI: 10.1016/J.Canlet.2017.02.002 |
0.372 |
|
| 2016 |
Elmas A, Ou Yang TH, Wang X, Anastassiou D. Discovering Genome-Wide Tag SNPs Based on the Mutual Information of the Variants. Plos One. 11: e0167994. PMID 27992465 DOI: 10.1371/Journal.Pone.0167994 |
0.319 |
|
| 2014 |
Ou Yang TH, Cheng WY, Zheng T, Maurer MA, Anastassiou D. Breast cancer prognostic biomarker using attractor metagenes and the FGD3-SUSD3 metagene. Cancer Epidemiology, Biomarkers & Prevention : a Publication of the American Association For Cancer Research, Cosponsored by the American Society of Preventive Oncology. 23: 2850-6. PMID 25249324 DOI: 10.1158/1055-9965.Epi-14-0399 |
0.584 |
|
| 2014 |
Iliadis A, Anastassiou D, Wang X. A sequential Monte Carlo framework for haplotype inference in CNV/SNP genotype data. Eurasip Journal On Bioinformatics & Systems Biology. 2014: 7. PMID 24868199 DOI: 10.1186/1687-4153-2014-7 |
0.546 |
|
| 2014 |
Miller CP, Thorpe JD, Kortum AN, Coy CM, Cheng WY, Ou Yang TH, Anastassiou D, Beatty JD, Urban ND, Blau CA. JAK2 expression is associated with tumor-infiltrating lymphocytes and improved breast cancer outcomes: implications for evaluating JAK2 inhibitors. Cancer Immunology Research. 2: 301-6. PMID 24764577 DOI: 10.1158/2326-6066.Cir-13-0189 |
0.549 |
|
| 2014 |
Cheng W, Yang TO, Maurer M, Anastassiou D. Abstract 2878: BCAM (breast cancer attractor metagenes): A new tool for assessing breast cancer prognosis Cancer Research. 74: 2878-2878. DOI: 10.1158/1538-7445.Am2014-2878 |
0.599 |
|
| 2013 |
Hernandez SL, Banerjee D, Garcia A, Kangsamaksin T, Cheng WY, Anastassiou D, Funahashi Y, Kadenhe-Chiweshe A, Shawber CJ, Kitajewski JK, Kandel JJ, Yamashiro DJ. Notch and VEGF pathways play distinct but complementary roles in tumor angiogenesis. Vascular Cell. 5: 17. PMID 24066611 DOI: 10.1186/2045-824X-5-17 |
0.524 |
|
| 2013 |
Jajamovich GH, Iliadis A, Anastassiou D, Wang X. Maximum-parsimony haplotype frequencies inference based on a joint constrained sparse representation of pooled DNA. Bmc Bioinformatics. 14: 270. PMID 24010487 DOI: 10.1186/1471-2105-14-270 |
0.552 |
|
| 2013 |
Cheng WY, Ou Yang TH, Anastassiou D. Development of a prognostic model for breast cancer survival in an open challenge environment. Science Translational Medicine. 5: 181ra50. PMID 23596202 DOI: 10.1126/Scitranslmed.3005974 |
0.607 |
|
| 2013 |
Cheng WY, Ou Yang TH, Anastassiou D. Biomolecular events in cancer revealed by attractor metagenes. Plos Computational Biology. 9: e1002920. PMID 23468608 DOI: 10.1371/journal.pcbi.1002920 |
0.588 |
|
| 2012 |
Iliadis A, Anastassiou D, Wang X. Fast and accurate haplotype frequency estimation for large haplotype vectors from pooled DNA data. Bmc Genetics. 13: 94. PMID 23110720 DOI: 10.1186/1471-2156-13-94 |
0.558 |
|
| 2012 |
Iliadis A, Anastassiou D, Wang X. A unified framework for haplotype inference in nuclear families. Annals of Human Genetics. 76: 312-25. PMID 22607042 DOI: 10.1111/J.1469-1809.2012.00715.X |
0.515 |
|
| 2012 |
Andreopoulos B, Anastassiou D. Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature. Cancer Informatics. 11: 61-75. PMID 22570537 DOI: 10.4137/Cin.S9037 |
0.371 |
|
| 2012 |
Cheng WY, Kandel JJ, Yamashiro DJ, Canoll P, Anastassiou D. A multi-cancer mesenchymal transition gene expression signature is associated with prolonged time to recurrence in glioblastoma. Plos One. 7: e34705. PMID 22493711 DOI: 10.1371/Journal.Pone.0034705 |
0.625 |
|
| 2012 |
Anastassiou D. Universality of a mesenchymal transition signature in invasive solid cancers Nature Precedings. 7: 1-1. DOI: 10.1038/Npre.2012.6862.1 |
0.405 |
|
| 2012 |
Cheng W, Anastassiou D. A subset of co-expressed genes in Slug-based cancer mesenchymal transition signature remains coexpressed in normal samples in a tissue-specific manner Nature Precedings. 7: 1-1. DOI: 10.1038/Npre.2012.6813.1 |
0.623 |
|
| 2011 |
Anastassiou D, Rumjantseva V, Cheng W, Huang J, Canoll PD, Yamashiro DJ, Kandel JJ. Human cancer cells express Slug-based epithelial-mesenchymal transition gene expression signature obtained in vivo. Bmc Cancer. 11: 529. PMID 22208948 DOI: 10.1186/1471-2407-11-529 |
0.609 |
|
| 2011 |
Kim H, Watkinson J, Anastassiou D. Biomarker discovery using statistically significant gene sets. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1329-38. PMID 21457009 DOI: 10.1089/Cmb.2010.0085 |
0.358 |
|
| 2011 |
Cheung YH, Watkinson J, Anastassiou D. Conditional meta-analysis stratifying on detailed HLA genotypes identifies a novel type 1 diabetes locus around TCF19 in the MHC. Human Genetics. 129: 161-76. PMID 21076979 DOI: 10.1007/S00439-010-0908-2 |
0.306 |
|
| 2011 |
Cheng W, Kandel JJ, Yamashiro DJ, Canoll P, Anastassiou D. Slug-based epithelial-mesenchymal transition gene signature is associated with prolonged time to recurrence in glioblastoma Nature Precedings. DOI: 10.1038/Npre.2011.6544.1 |
0.569 |
|
| 2011 |
Anastassiou D, Rumjantseva V, Cheng W, Huang J, Canoll PD, Yamashiro DJ, Kandel JJ. Human Cancer Cells Express Slug-based Epithelial-Mesenchymal Transition Gene Signature Obtained in Vivo Nature Precedings. DOI: 10.1038/Npre.2011.6243.1 |
0.609 |
|
| 2011 |
Cheng W, Kim H, Kandel J, Anastassiou D. Cancer invasion associated gene expression signature is present in differentially expressed genes in the reprogramming of fibroblasts into stem cells Nature Precedings. DOI: 10.1038/Npre.2011.5924.1 |
0.612 |
|
| 2010 |
Kim H, Watkinson J, Varadan V, Anastassiou D. Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1. Bmc Medical Genomics. 3: 51. PMID 21047417 DOI: 10.1186/1755-8794-3-51 |
0.603 |
|
| 2010 |
Iliadis A, Watkinson J, Anastassiou D, Wang X. A haplotype inference algorithm for trios based on deterministic sampling. Bmc Genetics. 11: 78. PMID 20727218 DOI: 10.1186/1471-2156-11-78 |
0.554 |
|
| 2010 |
Kim H, Watkinson J, Varadan V, Anastassiou D. Multi-Cancer Computational Analysis Reveals Metastasis-Associated Variant of Desmoplastic Reaction Involving INHBA and THBS2 Nature Precedings. DOI: 10.1038/Npre.2010.4503.1 |
0.603 |
|
| 2009 |
Watkinson J, Liang KC, Wang X, Zheng T, Anastassiou D. Inference of regulatory gene interactions from expression data using three-way mutual information. Annals of the New York Academy of Sciences. 1158: 302-13. PMID 19348651 DOI: 10.1111/J.1749-6632.2008.03757.X |
0.38 |
|
| 2008 |
Watkinson J, Wang X, Zheng T, Anastassiou D. Identification of gene interactions associated with disease from gene expression data using synergy networks. Bmc Systems Biology. 2: 10. PMID 18234101 DOI: 10.1186/1752-0509-2-10 |
0.34 |
|
| 2008 |
Liang KC, Wang X, Anastassiou D. A profile-based deterministic sequential Monte Carlo algorithm for motif discovery. Bioinformatics (Oxford, England). 24: 46-55. PMID 18024972 DOI: 10.1093/Bioinformatics/Btm543 |
0.326 |
|
| 2006 |
Varadan V, Miller DM, Anastassiou D. Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics (Oxford, England). 22: e497-506. PMID 16873513 DOI: 10.1093/Bioinformatics/Btl224 |
0.54 |
|
| 2006 |
Varadan V, Anastassiou D. Inference of disease-related molecular logic from systems-based microarray analysis. Plos Computational Biology. 2: e68. PMID 16789819 DOI: 10.1371/Journal.Pcbi.0020068 |
0.574 |
|
| 2006 |
Anastassiou D, Liu H, Varadan V. Variable window binding for mutually exclusive alternative splicing. Genome Biology. 7: R2. PMID 16507134 DOI: 10.1186/Gb-2006-7-1-R2 |
0.515 |
|
| 2004 |
Cavelier G, Anastassiou D. Data-based model and parameter evaluation in dynamic transcriptional regulatory networks. Proteins. 55: 339-50. PMID 15048826 DOI: 10.1002/Prot.20056 |
0.315 |
|
| 2001 |
Anastassiou D. Genomic signal processing Ieee Signal Processing Magazine. 18: 8-20. DOI: 10.1109/79.939833 |
0.3 |
|
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