Vinay Varadan, Ph.D. - Publications

Affiliations: 
2007 Columbia University, New York, NY 

34 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Varadan V, Sandoval M, Harris LN. Biomarkers for Predicting Response to Anti- HER2 Agents. Advances in Experimental Medicine and Biology. 882: 155-67. PMID 26987534 DOI: 10.1007/978-3-319-22909-6_6  1
2015 Varadan V, Kamalakaran S, Gilmore H, Banerjee N, Janevski A, Miskimen KL, Williams N, Basavanhalli A, Madabhushi A, Lezon-Geyda K, Bossuyt V, Lannin DR, Abu-Khalaf M, Sikov W, Dimitrova N, et al. Brief-exposure to preoperative bevacizumab reveals a TGF-β signature predictive of response in HER2-negative breast cancers. International Journal of Cancer. Journal International Du Cancer. PMID 26284485 DOI: 10.1002/ijc.29808  1
2013 Wrzeszczynski KO, Varadan V, Kamalakaran S, Levine DA, Dimitrova N, Lucito R. Integrative prediction of gene function and platinum-free survival from genomic and epigenetic features in ovarian cancer. Methods in Molecular Biology (Clifton, N.J.). 1049: 35-51. PMID 23913207 DOI: 10.1007/978-1-62703-547-7_4  1
2013 Kamalakaran S, Varadan V, Janevski A, Banerjee N, Tuck D, McCombie WR, Dimitrova N, Harris LN. Translating next generation sequencing to practice: opportunities and necessary steps. Molecular Oncology. 7: 743-55. PMID 23769412 DOI: 10.1016/j.molonc.2013.04.008  1
2013 Wang S, Wang L, Bayaxi N, Li J, Verhaegh W, Janevski A, Varadan V, Ren Y, Merkle D, Meng X, Gao X, Wang H, Ren J, Kuo WP, Dimitrova N, et al. A microRNA panel to discriminate carcinomas from high-grade intraepithelial neoplasms in colonoscopy biopsy tissue. Gut. 62: 280-9. PMID 22535378 DOI: 10.1136/gutjnl-2011-301554  1
2013 Lee J, Kim H, Chen L, Choi SH, Mathur GN, Varadan VK. Development of thermoelectric inks for the fabrication of printable thermoelectric generators used in mobile wearable health monitoring systems Proceedings of Spie - the International Society For Optical Engineering. 8691. DOI: 10.1117/12.2009765  0.4
2013 Varadan V, Agrawal V, Harris L, Dimitrova N. Identification and characterization of gene fusions in breast cancer - A non-trivial pursuit 2013 Ieee Global Conference On Signal and Information Processing, Globalsip 2013 - Proceedings. 109-112. DOI: 10.1109/GlobalSIP.2013.6736827  1
2012 Janevski A, Varadan V, Kamalakaran S, Banerjee N, Dimitrova N. Effective normalization for copy number variation detection from whole genome sequencing. Bmc Genomics. 13: S16. PMID 23134596 DOI: 10.1186/1471-2164-13-S6-S16  1
2012 Lee J, Kim H, Chen L, Choi SH, Varadan VK. Printable thermoelectric devices and conductive patterns for medical applications Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8548. DOI: 10.1117/12.946254  0.4
2012 Varadan V, Janevski A, Kamalakaran S, Banerjee N, Dimitrova N, Harris LN. Statistical assessment of gene fusion detection algorithms using RNA Sequencing Data 2012 Ieee Statistical Signal Processing Workshop, Ssp 2012. 708-711. DOI: 10.1109/SSP.2012.6319801  1
2012 Varadan V, Mittal P, Vaske CJ, Benz SC. The integration of biological pathway knowledge in cancer genomics: A review of existing computational approaches Ieee Signal Processing Magazine. 29: 35-50. DOI: 10.1109/MSP.2011.943037  1
2011 Wrzeszczynski KO, Varadan V, Byrnes J, Lum E, Kamalakaran S, Levine DA, Dimitrova N, Zhang MQ, Lucito R. Identification of tumor suppressors and oncogenes from genomic and epigenetic features in ovarian cancer. Plos One. 6: e28503. PMID 22174824 DOI: 10.1371/journal.pone.0028503  1
2011 Kamalakaran S, Varadan V, Giercksky Russnes HE, Levy D, Kendall J, Janevski A, Riggs M, Banerjee N, Synnestvedt M, Schlichting E, KÃ¥resen R, Shama Prasada K, Rotti H, Rao R, Rao L, et al. DNA methylation patterns in luminal breast cancers differ from non-luminal subtypes and can identify relapse risk independent of other clinical variables. Molecular Oncology. 5: 77-92. PMID 21169070 DOI: 10.1016/j.molonc.2010.11.002  1
2011 Tang MHE, Varadan V, Kamalakaran S, Zhang MQ, Dimitrova N, Hicks J. A method for finding novel associations between genome-wide copy number and dna methylation patterns Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 78-82.  1
2011 Janevski A, Varadan V, Kamalakaran S, Banerjee N, Dimitrova N. Comparative copy number variation from whole genome sequencing Proceedings - Ieee International Workshop On Genomic Signal Processing and Statistics. 123-126.  1
2010 Kim H, Watkinson J, Varadan V, Anastassiou D. Multi-cancer computational analysis reveals invasion-associated variant of desmoplastic reaction involving INHBA, THBS2 and COL11A1. Bmc Medical Genomics. 3: 51. PMID 21047417 DOI: 10.1186/1755-8794-3-51  1
2010 Banerjee N, Janevski A, Kamalakaran S, Varadan V, Lucito R, Dimitrova N. Pathway and network analysis probing epigenetic influences on chemosensitivity in ovarian cancer 2010 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2010. DOI: 10.1109/GENSIPS.2010.5719670  1
2009 Janevski A, Kamalakaran S, Banerjee N, Varadan V, Dimitrova N. PAPAyA: a platform for breast cancer biomarker signature discovery, evaluation and assessment. Bmc Bioinformatics. 10: S7. PMID 19761577 DOI: 10.1186/1471-2105-10-S9-S7  1
2009 Banerjee N, Varadan V, Kamalakaran S, Janevski A. Towards identification of thematic overlaps in gene sets 2009 Ieee International Workshop On Genomic Signal Processing and Statistics, Gensips 2009. DOI: 10.1109/GENSIPS.2009.5174372  1
2006 Varadan V, Miller DM, Anastassiou D. Computational inference of the molecular logic for synaptic connectivity in C. elegans. Bioinformatics (Oxford, England). 22: e497-506. PMID 16873513 DOI: 10.1093/bioinformatics/btl224  1
2006 Varadan V, Anastassiou D. Inference of disease-related molecular logic from systems-based microarray analysis. Plos Computational Biology. 2: e68. PMID 16789819 DOI: 10.1371/journal.pcbi.0020068  1
2006 Anastassiou D, Liu H, Varadan V. Variable window binding for mutually exclusive alternative splicing. Genome Biology. 7: R2. PMID 16507134 DOI: 10.1186/gb-2006-7-1-r2  1
2006 Varadan V, Leung H, Bossé E. Dynamical model reconstruction and accurate prediction of power-pool time series Ieee Transactions On Instrumentation and Measurement. 55: 327-336. DOI: 10.1109/TIM.2005.861492  1
2005 Long PM, Varadan V, Gilman S, Treshock M, Servedio RA. Unsupervised evidences integration Icml 2005 - Proceedings of the 22nd International Conference On Machine Learning. 521-528. DOI: 10.1145/1102351.1102417  1
2003 McConaghy T, Leung H, Bossé E, Varadan V. Classification of Audio Radar Signals Using Radial Basis Function Neural Networks Ieee Transactions On Instrumentation and Measurement. 52: 1771-1779. DOI: 10.1109/TIM.2003.820450  1
2002 Varadan V, Leung H. Design of piecewise maps for chaotic spread-spectrum communications using genetic programming Ieee Transactions On Circuits and Systems I: Fundamental Theory and Applications. 49: 1543-1553. DOI: 10.1109/TCSI.2002.804545  1
2002 Leung H, Varadan V. System modeling and design using genetic programming Proceedings - 1st Ieee International Conference On Cognitive Informatics, Icci 2002. 88-97. DOI: 10.1109/COGINF.2002.1039287  1
2002 Shanmugam SK, Varadan V, Leung H. Design of 1-D piece-wise maps for multi-user CDMA communications using a novel GP-DNA algorithm Recent Advances in Computers, Computing and Communications. 490-495.  1
2002 Varadan V, Leung H. Chaotic system reconstruction from noisy time series measurements using improved least squares genetic programming Proceedings - Ieee International Symposium On Circuits and Systems. 3: III/65-III/68.  1
2002 McDonald MK, Varadan V, Leung H. Chaotic behaviour and non-linear prediction of airborne radar sea clutter data Ieee National Radar Conference - Proceedings. 331-337.  1
2001 Varadan V, Leung H. Reconstruction of polynomial systems from noisy time-series measurements using genetic programming Ieee Transactions On Industrial Electronics. 48: 742-748. DOI: 10.1109/41.937405  1
2001 Murali K, Yu H, Varadan V, Leung H. Secure communication using a chaos based signal encryption scheme Ieee Transactions On Consumer Electronics. 47: 709-714. DOI: 10.1109/30.982780  1
2001 Varadan V, Leung H. Design of piece-wise maps for spread spectrum communication using genetic programming Proceedings - Ieee International Symposium On Circuits and Systems. 3: 225-228.  1
2000 McConaghy T, Leung H, Varadan V. Functional reconstruction of dynamical systems from time series using genetic programming Iecon Proceedings (Industrial Electronics Conference). 3: 2031-2034.  1
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