Mert R. Sabuncu, Ph.D. - Publications

Affiliations: 
2006 Princeton University, Princeton, NJ 
Area:
Biological & Biomedical,Information Sciences & Systems

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Gu Z, Jamison KW, Khosla M, Allen EJ, Wu Y, Naselaris T, Kay K, Sabuncu MR, Kuceyeski A. NeuroGen: Activation optimized image synthesis for discovery neuroscience. Neuroimage. 247: 118812. PMID 34936922 DOI: 10.1016/j.neuroimage.2021.118812  0.302
2020 Zhang J, Liu Z, Zhang S, Zhang H, Spincemaille P, Nguyen TD, Sabuncu MR, Wang Y. Fidelity imposed network edit (FINE) for solving ill-posed image reconstruction. Neuroimage. 116579. PMID 31981779 DOI: 10.1016/J.Neuroimage.2020.116579  0.378
2019 De Man Q, Haneda E, Claus B, Fitzgerald P, De Man B, Qian G, Shan H, Min J, Sabuncu M, Wang G. A two-dimensional feasibility study of deep learning-based feature detection and characterization directly from CT sinograms. Medical Physics. 46: e790-e800. PMID 31811791 DOI: 10.1002/Mp.13640  0.333
2019 He T, Kong R, Holmes AJ, Nguyen M, Sabuncu MR, Eickhoff SB, Bzdok D, Feng J, Thomas Yeo BT. Deep neural networks and kernel regression achieve comparable accuracies for functional connectivity prediction of behavior and demographics. Neuroimage. 116276. PMID 31610298 DOI: 10.1016/J.Neuroimage.2019.116276  0.352
2019 Dalca AV, Balakrishnan G, Guttag J, Sabuncu MR. Unsupervised learning of probabilistic diffeomorphic registration for images and surfaces. Medical Image Analysis. 57: 226-236. PMID 31351389 DOI: 10.1016/J.Media.2019.07.006  0.39
2019 Sun N, Mormino EC, Chen J, Sabuncu MR, Yeo BT. Multi-modal latent factor exploration of atrophy, cognitive and tau heterogeneity in Alzheimer's disease. Neuroimage. 116043. PMID 31344486 DOI: 10.1016/J.Neuroimage.2019.116043  0.31
2019 Khosla M, Jamison K, Kuceyeski A, Sabuncu MR. Ensemble learning with 3D convolutional neural networks for functional connectome-based prediction. Neuroimage. 199: 651-662. PMID 31220576 DOI: 10.1016/J.Neuroimage.2019.06.012  0.346
2019 Li J, Kong R, Liégeois R, Orban C, Tan Y, Sun N, Holmes AJ, Sabuncu MR, Ge T, Yeo BTT. Global signal regression strengthens association between resting-state functional connectivity and behavior. Neuroimage. PMID 30974241 DOI: 10.1016/J.Neuroimage.2019.04.016  0.346
2019 Haft-Javaherian M, Fang L, Muse V, Schaffer CB, Nishimura N, Sabuncu MR. Deep convolutional neural networks for segmenting 3D in vivo multiphoton images of vasculature in Alzheimer disease mouse models. Plos One. 14: e0213539. PMID 30865678 DOI: 10.1371/Journal.Pone.0213539  0.367
2019 Balakrishnan G, Zhao A, Sabuncu MR, Guttag J, Dalca AV. VoxelMorph: A Learning Framework for Deformable Medical Image Registration. Ieee Transactions On Medical Imaging. PMID 30716034 DOI: 10.1109/Tmi.2019.2897538  0.397
2019 Haft-Javaherian M, Schaffer CB, Nishimura N, Sabuncu MR. Comparison of convolutional neural and fully convolutional networks for segmentation of 3D in vivo multiphoton microscopy images of brain vasculature Brain. DOI: 10.1364/Brain.2019.Bt2A.4  0.364
2018 Kernbach JM, Yeo BTT, Smallwood J, Margulies DS, Thiebaut de Schotten M, Walter H, Sabuncu MR, Holmes AJ, Gramfort A, Varoquaux G, Thirion B, Bzdok D. Subspecialization within default mode nodes characterized in 10,000 UK Biobank participants. Proceedings of the National Academy of Sciences of the United States of America. PMID 30420501 DOI: 10.1073/Pnas.1804876115  0.322
2018 Dalca AV, Bouman KL, Freeman WT, Rost NS, Sabuncu MR, Golland P. Medical Image Imputation from Image Collections. Ieee Transactions On Medical Imaging. PMID 30136936 DOI: 10.1109/Tmi.2018.2866692  0.408
2018 Kong R, Li J, Orban C, Sabuncu MR, Liu H, Schaefer A, Sun N, Zuo XN, Holmes AJ, Eickhoff SB, Yeo BTT. Spatial Topography of Individual-Specific Cortical Networks Predicts Human Cognition, Personality, and Emotion. Cerebral Cortex (New York, N.Y. : 1991). PMID 29878084 DOI: 10.1093/Cercor/Bhy123  0.326
2018 Reinen JM, Chén OY, Hutchison RM, Yeo BTT, Anderson KM, Sabuncu MR, Öngür D, Roffman JL, Smoller JW, Baker JT, Holmes AJ. The human cortex possesses a reconfigurable dynamic network architecture that is disrupted in psychosis. Nature Communications. 9: 1157. PMID 29559638 DOI: 10.1038/S41467-018-03462-Y  0.311
2017 Dalca AV, Bouman KL, Freeman WT, Rost NS, Sabuncu MR, Golland P. Population Based Image Imputation. Information Processing in Medical Imaging : Proceedings of the ... Conference. 10265: 659-671. PMID 29379264 DOI: 10.1007/978-3-319-59050-9_52  0.311
2017 Winkler AM, Greve DN, Bjuland KJ, Nichols TE, Sabuncu MR, Ha Berg AK, Skranes J, Rimol LM. Joint Analysis of Cortical Area and Thickness as a Replacement for the Analysis of the Volume of the Cerebral Cortex. Cerebral Cortex (New York, N.Y. : 1991). 1-12. PMID 29190325 DOI: 10.1093/Cercor/Bhx308  0.376
2017 Ge T, Holmes AJ, Buckner RL, Smoller JW, Sabuncu MR. Heritability analysis with repeat measurements and its application to resting-state functional connectivity. Proceedings of the National Academy of Sciences of the United States of America. PMID 28484032 DOI: 10.1073/Pnas.1700765114  0.35
2017 Nenning KH, Liu H, Ghosh S, Sabuncu M, Schwartz E, Langs G. Diffeomorphic Functional Brain Surface Alignment: Functional Demons. Neuroimage. PMID 28416451 DOI: 10.1016/J.Neuroimage.2017.04.028  0.383
2017 Ge T, Chen CY, Neale BM, Sabuncu MR, Smoller JW. Phenome-wide heritability analysis of the UK Biobank. Plos Genetics. 13: e1006711. PMID 28388634 DOI: 10.1371/Journal.Pgen.1006711  0.306
2017 Sepulcre J, Sabuncu MR, Li Q, El Fakhri G, Sperling R, Johnson KA. Tau and Aβ proteins distinctively associate to functional network changes in the aging brain. Alzheimer's & Dementia : the Journal of the Alzheimer's Association. PMID 28366797 DOI: 10.1016/J.Jalz.2017.02.011  0.308
2017 Aganj I, Iglesias JE, Reuter M, Sabuncu MR, Fischl B. Mid-Space-Independent Deformable Image Registration. Neuroimage. PMID 28242316 DOI: 10.1016/J.Neuroimage.2017.02.055  0.343
2016 Putzel GG, Battistella G, Rumbach AF, Ozelius LJ, Sabuncu MR, Simonyan K. Polygenic Risk of Spasmodic Dysphonia is Associated With Vulnerable Sensorimotor Connectivity. Cerebral Cortex (New York, N.Y. : 1991). 1-9. PMID 29117296 DOI: 10.1093/Cercor/Bhw363  0.311
2016 Ge T, Reuter M, Winkler AM, Holmes AJ, Lee PH, Tirrell LS, Roffman JL, Buckner RL, Smoller JW, Sabuncu MR. Multidimensional heritability analysis of neuroanatomical shape. Nature Communications. 7: 13291. PMID 27845344 DOI: 10.1038/Ncomms13291  0.35
2016 Zhang X, Mormino EC, Sun N, Sperling RA, Sabuncu MR, Yeo BT. Bayesian model reveals latent atrophy factors with dissociable cognitive trajectories in Alzheimer's disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 27702899 DOI: 10.1073/Pnas.1611073113  0.311
2016 Sabuncu MR, Ge T, Holmes AJ, Smoller JW, Buckner RL, Fischl B. Morphometricity as a measure of the neuroanatomical signature of a trait. Proceedings of the National Academy of Sciences of the United States of America. PMID 27613854 DOI: 10.1073/Pnas.1604378113  0.38
2016 Sepulcre J, Schultz AP, Sabuncu M, Gomez-Isla T, Chhatwal J, Becker A, Sperling R, Johnson KA. In Vivo Tau, Amyloid, and Gray Matter Profiles in the Aging Brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 7364-74. PMID 27413148 DOI: 10.1523/Jneurosci.0639-16.2016  0.333
2016 Batmanghelich N, Dalca A, Quon G, Sabuncu M, Golland P. Probabilistic Modeling of Imaging, Genetics and Diagnosis. Ieee Transactions On Medical Imaging. PMID 26886973 DOI: 10.1109/Tmi.2016.2527784  0.404
2015 Langs G, Wang D, Golland P, Mueller S, Pan R, Sabuncu MR, Sun W, Li K, Liu H. Identifying Shared Brain Networks in Individuals by Decoupling Functional and Anatomical Variability. Cerebral Cortex (New York, N.Y. : 1991). PMID 26334050 DOI: 10.1093/Cercor/Bhv189  0.363
2015 Iglesias JE, Sabuncu MR. Multi-atlas segmentation of biomedical images: A survey. Medical Image Analysis. 24: 205-19. PMID 26201875 DOI: 10.1016/J.Media.2015.06.012  0.369
2015 Ge T, Nichols TE, Lee PH, Holmes AJ, Roffman JL, Buckner RL, Sabuncu MR, Smoller JW. Massively expedited genome-wide heritability analysis (MEGHA). Proceedings of the National Academy of Sciences of the United States of America. 112: 2479-84. PMID 25675487 DOI: 10.1073/Pnas.1415603112  0.348
2015 Ge T, Nichols TE, Ghosh D, Mormino EC, Smoller JW, Sabuncu MR. A kernel machine method for detecting effects of interaction between multidimensional variable sets: an imaging genetics application. Neuroimage. 109: 505-14. PMID 25600633 DOI: 10.1016/J.Neuroimage.2015.01.029  0.348
2015 Iglesias JE, Sabuncu MR, Aganj I, Bhatt P, Casillas C, Salat D, Boxer A, Fischl B, Van Leemput K. An algorithm for optimal fusion of atlases with different labeling protocols. Neuroimage. 106: 451-63. PMID 25463466 DOI: 10.1016/J.Neuroimage.2014.11.031  0.346
2015 Aganj I, Reuter M, Sabuncu MR, Fischl B. Avoiding symmetry-breaking spatial non-uniformity in deformable image registration via a quasi-volume-preserving constraint. Neuroimage. 106: 238-51. PMID 25449738 DOI: 10.1016/J.Neuroimage.2014.10.059  0.42
2015 Sabuncu MR, Konukoglu E. Clinical prediction from structural brain MRI scans: a large-scale empirical study. Neuroinformatics. 13: 31-46. PMID 25048627 DOI: 10.1007/S12021-014-9238-1  0.416
2014 Sabuncu MR, Bernal-Rusiel JL, Reuter M, Greve DN, Fischl B. Event time analysis of longitudinal neuroimage data. Neuroimage. 97: 9-18. PMID 24736175 DOI: 10.1016/J.Neuroimage.2014.04.015  0.436
2014 Zeng LL, Wang D, Fox MD, Sabuncu M, Hu D, Ge M, Buckner RL, Liu H. Neurobiological basis of head motion in brain imaging. Proceedings of the National Academy of Sciences of the United States of America. 111: 6058-62. PMID 24711399 DOI: 10.1073/Pnas.1317424111  0.302
2013 Sepulcre J, Sabuncu MR, Becker A, Sperling R, Johnson KA. In vivo characterization of the early states of the amyloid-beta network. Brain : a Journal of Neurology. 136: 2239-52. PMID 23801740 DOI: 10.1093/Brain/Awt146  0.306
2013 Iglesias JE, Sabuncu MR, Van Leemput K. Improved inference in Bayesian segmentation using Monte Carlo sampling: application to hippocampal subfield volumetry. Medical Image Analysis. 17: 766-78. PMID 23773521 DOI: 10.1016/J.Media.2013.04.005  0.401
2013 Bernal-Rusiel JL, Reuter M, Greve DN, Fischl B, Sabuncu MR. Spatiotemporal linear mixed effects modeling for the mass-univariate analysis of longitudinal neuroimage data. Neuroimage. 81: 358-70. PMID 23702413 DOI: 10.1016/J.Neuroimage.2013.05.049  0.448
2013 Greve DN, Van der Haegen L, Cai Q, Stufflebeam S, Sabuncu MR, Fischl B, Brysbaert M. A surface-based analysis of language lateralization and cortical asymmetry. Journal of Cognitive Neuroscience. 25: 1477-92. PMID 23701459 DOI: 10.1162/Jocn_A_00405  0.315
2013 Mueller S, Wang D, Fox MD, Yeo BT, Sepulcre J, Sabuncu MR, Shafee R, Lu J, Liu H. Individual variability in functional connectivity architecture of the human brain. Neuron. 77: 586-95. PMID 23395382 DOI: 10.1016/J.Neuron.2012.12.028  0.354
2013 Bernal-Rusiel JL, Greve DN, Reuter M, Fischl B, Sabuncu MR. Statistical analysis of longitudinal neuroimage data with Linear Mixed Effects models. Neuroimage. 66: 249-60. PMID 23123680 DOI: 10.1016/J.Neuroimage.2012.10.065  0.383
2013 Aganj I, Yeo BT, Sabuncu MR, Fischl B. On removing interpolation and resampling artifacts in rigid image registration. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 22: 816-27. PMID 23076044 DOI: 10.1109/Tip.2012.2224356  0.398
2012 Sabuncu MR, Van Leemput K. The relevance voxel machine (RVoxM): a self-tuning Bayesian model for informative image-based prediction. Ieee Transactions On Medical Imaging. 31: 2290-306. PMID 23008245 DOI: 10.1109/Tmi.2012.2216543  0.375
2012 Sepulcre J, Sabuncu MR, Yeo TB, Liu H, Johnson KA. Stepwise connectivity of the modal cortex reveals the multimodal organization of the human brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 10649-61. PMID 22855814 DOI: 10.1523/Jneurosci.0759-12.2012  0.36
2012 Sepulcre J, Sabuncu MR, Johnson KA. Network assemblies in the functional brain. Current Opinion in Neurology. 25: 384-91. PMID 22766721 DOI: 10.1097/Wco.0B013E328355A8E8  0.335
2012 Winkler AM, Sabuncu MR, Yeo BT, Fischl B, Greve DN, Kochunov P, Nichols TE, Blangero J, Glahn DC. Measuring and comparing brain cortical surface area and other areal quantities. Neuroimage. 61: 1428-43. PMID 22446492 DOI: 10.1016/J.Neuroimage.2012.03.026  0.352
2012 Sabuncu MR, Buckner RL, Smoller JW, Lee PH, Fischl B, Sperling RA. The association between a polygenic Alzheimer score and cortical thickness in clinically normal subjects. Cerebral Cortex (New York, N.Y. : 1991). 22: 2653-61. PMID 22169231 DOI: 10.1093/Cercor/Bhr348  0.325
2011 Sabuncu MR, Desikan RS, Sepulcre J, Yeo BT, Liu H, Schmansky NJ, Reuter M, Weiner MW, Buckner RL, Sperling RA, Fischl B. The dynamics of cortical and hippocampal atrophy in Alzheimer disease. Archives of Neurology. 68: 1040-8. PMID 21825241 DOI: 10.1001/Archneurol.2011.167  0.34
2011 Yeo BT, Krienen FM, Sepulcre J, Sabuncu MR, Lashkari D, Hollinshead M, Roffman JL, Smoller JW, Zöllei L, Polimeni JR, Fischl B, Liu H, Buckner RL. The organization of the human cerebral cortex estimated by intrinsic functional connectivity. Journal of Neurophysiology. 106: 1125-65. PMID 21653723 DOI: 10.1152/Jn.00338.2011  0.332
2010 Desikan RS, Sabuncu MR, Schmansky NJ, Reuter M, Cabral HJ, Hess CP, Weiner MW, Biffi A, Anderson CD, Rosand J, Salat DH, Kemper TL, Dale AM, Sperling RA, Fischl B, et al. Selective disruption of the cerebral neocortex in Alzheimer's disease. Plos One. 5: e12853. PMID 20886094 DOI: 10.1371/Journal.Pone.0012853  0.312
2010 Sabuncu MR, Yeo BT, Van Leemput K, Fischl B, Golland P. A generative model for image segmentation based on label fusion. Ieee Transactions On Medical Imaging. 29: 1714-29. PMID 20562040 DOI: 10.1109/Tmi.2010.2050897  0.405
2010 Biffi A, Anderson CD, Desikan RS, Sabuncu M, Cortellini L, Schmansky N, Salat D, Rosand J. Genetic variation and neuroimaging measures in Alzheimer disease. Archives of Neurology. 67: 677-85. PMID 20558387 DOI: 10.1001/Archneurol.2010.108  0.311
2010 Yeo BT, Sabuncu MR, Vercauteren T, Holt DJ, Amunts K, Zilles K, Golland P, Fischl B. Learning task-optimal registration cost functions for localizing cytoarchitecture and function in the cerebral cortex. Ieee Transactions On Medical Imaging. 29: 1424-41. PMID 20529736 DOI: 10.1109/Tmi.2010.2049497  0.388
2010 Yeo BT, Sabuncu MR, Vercauteren T, Ayache N, Fischl B, Golland P. Spherical demons: fast diffeomorphic landmark-free surface registration. Ieee Transactions On Medical Imaging. 29: 650-68. PMID 19709963 DOI: 10.1109/Tmi.2009.2030797  0.377
2010 Sabuncu MR, Singer BD, Conroy B, Bryan RE, Ramadge PJ, Haxby JV. Function-based intersubject alignment of human cortical anatomy. Cerebral Cortex (New York, N.Y. : 1991). 20: 130-40. PMID 19420007 DOI: 10.1093/Cercor/Bhp085  0.715
2009 Ziyan U, Sabuncu MR, Grimson WE, Westin CF. Consistency Clustering: A Robust Algorithm for Group-wise Registration, Segmentation and Automatic Atlas Construction in Diffusion MRI. International Journal of Computer Vision. 85: 279-290. PMID 20442792 DOI: 10.1007/S11263-009-0217-1  0.329
2009 Sabuncu MR, Yeo BT, Van Leemput K, Fischl B, Golland P. Supervised nonparametric image parcellation. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12: 1075-83. PMID 20426218 DOI: 10.1007/978-3-642-04271-3_130  0.307
2009 Sabuncu MR, Balci SK, Shenton ME, Golland P. Image-driven population analysis through mixture modeling. Ieee Transactions On Medical Imaging. 28: 1473-87. PMID 19336293 DOI: 10.1109/Tmi.2009.2017942  0.392
2009 Yeo B, Sabuncu M, Golland P, Fischl B. Modeling the Relationship between Cortical Geometry and Cytoarchitectonics via Image Registration Neuroimage. 47: S100. DOI: 10.1016/S1053-8119(09)70844-4  0.355
2008 Yeo BT, Sabuncu MR, Desikan R, Fischl B, Golland P. Effects of registration regularization and atlas sharpness on segmentation accuracy. Medical Image Analysis. 12: 603-15. PMID 18667352 DOI: 10.1016/J.Media.2008.06.005  0.399
2008 Sabuncu MR, Ramadge P. Using spanning graphs for efficient image registration. Ieee Transactions On Image Processing : a Publication of the Ieee Signal Processing Society. 17: 788-97. PMID 18390383 DOI: 10.1109/Tip.2008.918951  0.613
2007 Yeo BT, Sabuncu MR, Desikan R, Fischl B, Golland P. Effects of registration regularization and atlas sharpness on segmentation accuracy. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 10: 683-91. PMID 18051118  0.311
2007 Sabuncu M, Ramadge P. Gradient based nonuniform subsampling for information-theoretic alignment methods. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2004: 1683-6. PMID 17272027 DOI: 10.1109/IEMBS.2004.1403507  0.588
2005 Sabuncu MR, Ramadge PJ. Gradient based optimization of an EMST image registration funtion Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. II253-II256. DOI: 10.1109/ICASSP.2005.1415389  0.599
2005 Sabuncu MR, Ramadge PJ. Graph-theoretic image registration using prior examples 13th European Signal Processing Conference, Eusipco 2005. 1491-1494.  0.612
2004 Sabuncu MR, Ramadge PJ. Fast alignment of digital images using a lower bound on an entropy metric Proceedings - International Conference On Image Processing, Icip. 3: 1919-1922. DOI: 10.1109/ICIP.2004.1421454  0.591
2004 Sabuncu MR, Ramadge PJ. Gradient based nonuniform subsampling for information-theoretic alignment methods Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 26: 1683-1686.  0.588
2003 Sabuncu MR, Ramadge PJ. Spatial information in entropy-based image registration Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2717: 132-141.  0.608
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