| Year |
Citation |
Score |
| 2023 |
Tsakirpaloglou N, Septiningsih EM, Thomson MJ. Guidelines for Performing CRISPR/Cas9 Genome Editing for Gene Validation and Trait Improvement in Crops. Plants (Basel, Switzerland). 12. PMID 37896028 DOI: 10.3390/plants12203564 |
0.687 |
|
| 2023 |
Bridgeland A, Biswas S, Tsakirpaloglou N, Thomson MJ, Septiningsih EM. Optimization of gene editing in cowpea through protoplast transformation and agroinfiltration by targeting the phytoene desaturase gene. Plos One. 18: e0283837. PMID 37018323 DOI: 10.1371/journal.pone.0283837 |
0.654 |
|
| 2022 |
Morales KY, Bridgeland AH, Hake KD, Udall JA, Thomson MJ, Yu JZ. Homology-based identification of candidate genes for male sterility editing in upland cotton ( L.). Frontiers in Plant Science. 13: 1006264. PMID 36589117 DOI: 10.3389/fpls.2022.1006264 |
0.334 |
|
| 2022 |
Islam ASMF, Mustahsan W, Tabien R, Awika JM, Septiningsih EM, Thomson MJ. Identifying the Genetic Basis of Mineral Elements in Rice Grain Using Genome-Wide Association Mapping. Genes. 13. PMID 36553597 DOI: 10.3390/genes13122330 |
0.716 |
|
| 2022 |
Mondal S, Septiningsih EM, Singh RK, Thomson MJ. Mapping QTLs for Reproductive Stage Salinity Tolerance in Rice Using a Cross between Hasawi and BRRI dhan28. International Journal of Molecular Sciences. 23. PMID 36232678 DOI: 10.3390/ijms231911376 |
0.702 |
|
| 2022 |
Thapa R, Tabien RE, Thomson MJ, Septiningsih EM. Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis. The Plant Genome. e20261. PMID 36169134 DOI: 10.1002/tpg2.20261 |
0.722 |
|
| 2022 |
Biswas S, Bridgeland A, Irum S, Thomson MJ, Septiningsih EM. Optimization of Prime Editing in Rice, Peanut, Chickpea, and Cowpea Protoplasts by Restoration of GFP Activity. International Journal of Molecular Sciences. 23. PMID 36077206 DOI: 10.3390/ijms23179809 |
0.65 |
|
| 2022 |
de Ocampo MP, Ho VT, Thomson MJ, Mitsuya S, Yamauchi A, Ismail AM. QTL mapping under salt stress in rice using a Kalarata-Azucena population. Euphytica: Netherlands Journal of Plant Breeding. 218: 74. PMID 36060537 DOI: 10.1007/s10681-022-03026-8 |
0.392 |
|
| 2022 |
Thomson MJ, Biswas S, Tsakirpaloglou N, Septiningsih EM. Functional Allele Validation by Gene Editing to Leverage the Wealth of Genetic Resources for Crop Improvement. International Journal of Molecular Sciences. 23. PMID 35743007 DOI: 10.3390/ijms23126565 |
0.717 |
|
| 2022 |
Biswas S, Ibarra O, Shaphek M, Molina-Risco M, Faion-Molina M, Bellinatti-Della Gracia M, Thomson MJ, Septiningsih EM. Increasing the level of resistant starch in 'Presidio' rice through multiplex CRISPR-Cas9 gene editing of starch branching enzyme genes. The Plant Genome. e20225. PMID 35713092 DOI: 10.1002/tpg2.20225 |
0.679 |
|
| 2022 |
Sanchez DL, Samonte SOP, Alpuerto JBB, Croaker PA, Morales KY, Yang Y, Wilson LT, Tabien RE, Yan Z, Thomson MJ, Septiningsih EM. Phenotypic variation and genome-wide association studies of main culm panicle node number, maximum node production rate, and degree-days to heading in rice. Bmc Genomics. 23: 390. PMID 35606708 DOI: 10.1186/s12864-022-08629-y |
0.664 |
|
| 2022 |
Dunbar T, Tsakirpaloglou N, Septiningsih EM, Thomson MJ. Carbon Nanotube-Mediated Plasmid DNA Delivery in Rice Leaves and Seeds. International Journal of Molecular Sciences. 23. PMID 35456898 DOI: 10.3390/ijms23084081 |
0.635 |
|
| 2022 |
Biswas S, Wahl NJ, Thomson MJ, Cason JM, McCutchen BF, Septiningsih EM. Optimization of Protoplast Isolation and Transformation for a Pilot Study of Genome Editing in Peanut by Targeting the Allergen Gene . International Journal of Molecular Sciences. 23. PMID 35055026 DOI: 10.3390/ijms23020837 |
0.658 |
|
| 2021 |
Molina-Risco M, Ibarra O, Faion-Molina M, Kim B, Septiningsih EM, Thomson MJ. Optimizing -Mediated Transformation and CRISPR-Cas9 Gene Editing in the Rice Variety Presidio. International Journal of Molecular Sciences. 22. PMID 34681568 DOI: 10.3390/ijms222010909 |
0.652 |
|
| 2021 |
Farber C, Islam ASMF, Septiningsih EM, Thomson MJ, Kurouski D. Non-Invasive Identification of Nutrient Components in Grain. Molecules (Basel, Switzerland). 26. PMID 34073711 DOI: 10.3390/molecules26113124 |
0.659 |
|
| 2021 |
Kim B, Piao R, Lee G, Koh E, Lee Y, Woo S, Reflinur, Jiang W, Septiningsih EM, Thomson MJ, Koh HJ. OsCOP1 regulates embryo development and flavonoid biosynthesis in rice (Oryza sativa L.). Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 33950284 DOI: 10.1007/s00122-021-03844-9 |
0.65 |
|
| 2020 |
Morales KY, Singh N, Perez FA, Ignacio JC, Thapa R, Arbelaez JD, Tabien RE, Famoso A, Wang DR, Septiningsih EM, Shi Y, Kretzschmar T, McCouch SR, Thomson MJ. An improved 7K SNP array, the C7AIR, provides a wealth of validated SNP markers for rice breeding and genetics studies. Plos One. 15: e0232479. PMID 32407369 DOI: 10.1371/Journal.Pone.0232479 |
0.785 |
|
| 2020 |
Thapa R, Tabien RE, Thomson MJ, Septiningsih EM. Genome-Wide Association Mapping to Identify Genetic Loci for Cold Tolerance and Cold Recovery During Germination in Rice. Frontiers in Genetics. 11: 22. PMID 32153631 DOI: 10.3389/Fgene.2020.00022 |
0.739 |
|
| 2019 |
Baltazar MD, Ignacio JCI, Thomson MJ, Ismail AM, Mendioro MS, Septiningsih EM. QTL mapping for tolerance to anaerobic germination in rice from IR64 and the landrace Kharsu 80A. Breeding Science. 69: 227-233. PMID 31481831 DOI: 10.1270/Jsbbs.18159 |
0.725 |
|
| 2019 |
Rahman MA, Thomson MJ, De Ocampo M, Egdane JA, Salam MA, Shah-E-Alam M, Ismail AM. Assessing trait contribution and mapping novel QTL for salinity tolerance using the Bangladeshi rice landrace Capsule. Rice (New York, N.Y.). 12: 63. PMID 31410650 DOI: 10.1186/S12284-019-0319-5 |
0.483 |
|
| 2019 |
Arbelaez JD, Dwiyanti MS, Tandayu E, Llantada K, Jarana A, Ignacio JC, Platten JD, Cobb J, Rutkoski JE, Thomson MJ, Kretzschmar T. 1k-RiCA (1K-Rice Custom Amplicon) a novel genotyping amplicon-based SNP assay for genetics and breeding applications in rice. Rice (New York, N.Y.). 12: 55. PMID 31350673 DOI: 10.1186/S12284-019-0311-0 |
0.443 |
|
| 2019 |
Juanillas V, Dereeper A, Beaume N, Droc G, Dizon J, Mendoza JR, Perdon JP, Mansueto L, Triplett L, Lang J, Zhou G, Ratharanjan K, Plale B, Haga J, Leach JE, ... ... Thomson M, et al. Rice Galaxy: an open resource for plant science. Gigascience. 8. PMID 31107941 DOI: 10.1093/Gigascience/Giz028 |
0.525 |
|
| 2019 |
Mondal S, Borromeo TH, Diaz MGQ, Amas J, Rahman MA, Thomson MJ, Gregorio GB. Dissecting QTLs for Reproductive Stage Salinity Tolerance in Rice from BRRI dhan 47 Plant Breeding and Biotechnology. 7: 302-312. DOI: 10.9787/Pbb.2019.7.4.302 |
0.353 |
|
| 2019 |
Thomson M. 230 Genome editing applications in plants: high-throughput CRISPR/Cas editing for crop improvement Journal of Animal Science. 97: 56-56. DOI: 10.1093/Jas/Skz258.115 |
0.48 |
|
| 2017 |
Thomson MJ, Singh N, Dwiyanti MS, Wang DR, Wright MH, Perez FA, DeClerck G, Chin JH, Malitic-Layaoen GA, Juanillas VM, Dilla-Ermita CJ, Mauleon R, Kretzschmar T, McCouch SR. Large-scale deployment of a rice 6 K SNP array for genetics and breeding applications. Rice (New York, N.Y.). 10: 40. PMID 28856618 DOI: 10.1186/S12284-017-0181-2 |
0.625 |
|
| 2017 |
Kadam N, Tamilselvan A, Lawas LMF, Quinones C, Bahuguna R, Thomson MJ, Dingkuhn M, Muthurajan R, Struik P, Yin X, Jagadish K. Genetic control of plasticity in root morphology and anatomy of rice in response to water-deficit. Plant Physiology. PMID 28600346 DOI: 10.1104/Pp.17.00500 |
0.441 |
|
| 2017 |
Dilla-Ermita CJ, Tandayu E, Juanillas VM, Detras J, Lozada DN, Dwiyanti MS, Vera Cruz C, Mbanjo EG, Ardales E, Diaz MG, Mendioro M, Thomson MJ, Kretzschmar T. Genome-wide Association Analysis Tracks Bacterial Leaf Blight Resistance Loci In Rice Diverse Germplasm. Rice (New York, N.Y.). 10: 8. PMID 28321828 DOI: 10.1186/S12284-017-0147-4 |
0.435 |
|
| 2017 |
Gonzaga ZJC, Carandang J, Singh A, Collard BC, Thomson MJ, Septiningsih EM. Mapping QTLs for submergence tolerance in rice using a population fixed for SUB1A tolerant allele Molecular Breeding. 37. DOI: 10.1007/S11032-017-0637-5 |
0.734 |
|
| 2016 |
Ereful NC, Liu LY, Tsai E, Kao SM, Dixit S, Mauleon R, Malabanan K, Thomson M, Laurena A, Lee D, Mackay I, Greenland A, Powell W, Leung H. Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs. Rice (New York, N.Y.). 9: 50. PMID 27671164 DOI: 10.1186/S12284-016-0123-4 |
0.455 |
|
| 2016 |
Rahman MA, Thomson MJ, Shah-E-Alam M, de Ocampo M, Egdane J, Ismail AM. Exploring novel genetic sources of salinity tolerance in rice through molecular and physiological characterization. Annals of Botany. PMID 27063367 DOI: 10.1093/Aob/Mcw030 |
0.424 |
|
| 2016 |
Ho VT, Thomson MJ, Ismail AM. Development of salt tolerant IR64 near isogenic lines through marker-assisted breeding Journal of Crop Science and Biotechnology. 19: 373-381. DOI: 10.1007/S12892-016-0049-9 |
0.449 |
|
| 2016 |
Chin JH, Lee YJ, Jiang W, Koh HJ, Thomson MJ. Characterization of indica–japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato) Genetic Resources and Crop Evolution. 1-14. DOI: 10.1007/S10722-016-0368-1 |
0.476 |
|
| 2015 |
Shah SM, Arif M, Aslam K, Shabir G, Thomson MJ. Genetic diversity analysis of Pakistan rice (Oryza sativa) germplasm using multiplexed single nucleotide polymorphism markers Genetic Resources and Crop Evolution. DOI: 10.1007/S10722-015-0304-9 |
0.498 |
|
| 2015 |
Pariasca-Tanaka J, Lorieux M, He C, McCouch S, Thomson MJ, Wissuwa M. Development of a SNP genotyping panel for detecting polymorphisms in Oryza glaberrima/O. sativa interspecific crosses Euphytica. 201: 67-78. DOI: 10.1007/S10681-014-1183-4 |
0.646 |
|
| 2014 |
Ngu MS, Thomson MJ, Bhuiyan MAR, Ho C, Wickneswari R. Fine mapping of a grain weight quantitative trait locus, qGW6, Using near isogenic lines derived from oryza rufipogon IRGC105491 and oryza sativa cultivar MR219 Genetics and Molecular Research. 13: 9477-9488. PMID 25501158 DOI: 10.4238/2014.November.11.13 |
0.494 |
|
| 2014 |
Trijatmiko KR, Supriyanta, Prasetiyono J, Thomson MJ, Vera Cruz CM, Moeljopawiro S, Pereira A. Meta-analysis of quantitative trait loci for grain yield and component traits under reproductive-stage drought stress in an upland rice population. Molecular Breeding : New Strategies in Plant Improvement. 34: 283-295. PMID 25076836 DOI: 10.1007/S11032-013-0012-0 |
0.513 |
|
| 2014 |
Thomson MJ. High-Throughput SNP Genotyping to Accelerate Crop Improvement Plant Breeding and Biotechnology. 2: 195-212. DOI: 10.9787/Pbb.2014.2.3.195 |
0.49 |
|
| 2014 |
Lee YJ, Thomson MJ, Chin JH. Application of indica-japonica single-nucleotide polymorphism markers for diversity analysis of Oryza AA genome species Plant Genetic Resources: Characterisation and Utilisation. 12: S36-S40. DOI: 10.1017/S1479262114000215 |
0.505 |
|
| 2014 |
Baltazar MD, Ignacio JCI, Thomson MJ, Ismail AM, Mendioro MS, Septiningsih EM. QTL mapping for tolerance of anaerobic germination from IR64 and the aus landrace Nanhi using SNP genotyping Euphytica. 197: 251-260. DOI: 10.1007/S10681-014-1064-X |
0.738 |
|
| 2013 |
Bandillo N, Raghavan C, Muyco PA, Sevilla MA, Lobina IT, Dilla-Ermita CJ, Tung CW, McCouch S, Thomson M, Mauleon R, Singh RK, Gregorio G, Redoña E, Leung H. Multi-parent advanced generation inter-cross (MAGIC) populations in rice: progress and potential for genetics research and breeding. Rice (New York, N.Y.). 6: 11. PMID 24280183 DOI: 10.1186/1939-8433-6-11 |
0.597 |
|
| 2012 |
Ye C, Argayoso MA, Redoña ED, Sierra SN, Laza MA, Dilla CJ, Mo Y, Thomson MJ, Chin J, Delaviña CB, Diaz GQ, Hernandez JE. Mapping QTL for heat tolerance at flowering stage in rice using SNP markers Plant Breeding. 131: 33-41. DOI: 10.1111/J.1439-0523.2011.01924.X |
0.493 |
|
| 2012 |
Jagadish SVK, Septiningsih EM, Kohli A, Thomson MJ, Ye C, Redoña E, Kumar A, Gregorio GB, Wassmann R, Ismail AM, Singh RK. Genetic Advances in Adapting Rice to a Rapidly Changing Climate Journal of Agronomy and Crop Science. 198: 360-373. DOI: 10.1111/J.1439-037X.2012.00525.X |
0.692 |
|
| 2012 |
Wickneswari R, Bhuiyan MAR, Kalluvettankuzhy SK, Lim LS, Thomson MJ, Narimah MK, Abdullah MZ. Identification and Validation of Quantitative Trait Loci for Agronomic Traits in Advanced Backcross Breeding Lines Derived from Oryza rufipogon × Oryza sativa Cultivar MR219 Plant Molecular Biology Reporter. 30: 929-939. DOI: 10.1007/S11105-011-0404-4 |
0.479 |
|
| 2012 |
Xu Y, Li ZK, Thomson MJ. Molecular breeding in plants: Moving into the mainstream Molecular Breeding. 29: 831-832. DOI: 10.1007/S11032-012-9717-8 |
0.537 |
|
| 2012 |
Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizenga G, McClung A, Kim H, Ismail AM, de Ocampo M, Mojica C, Reveche MY, et al. High-throughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform Molecular Breeding. 29: 875-886. DOI: 10.1007/S11032-011-9663-X |
0.683 |
|
| 2011 |
Alam R, Sazzadur Rahman M, Seraj ZI, Thomson MJ, Ismail AM, Tumimbang-Raiz E, Gregorio GB. Investigation of seedling-stage salinity tolerance QTLs using backcross lines derived from Oryza sativa L. Pokkali Plant Breeding. 130: 430-437. DOI: 10.1111/J.1439-0523.2010.01837.X |
0.502 |
|
| 2010 |
Widodo B, Broadley MR, Rose T, Frei M, Pariasca-Tanaka J, Yoshihashi T, Thomson M, Hammond JP, Aprile A, Close TJ, Ismail AM, Wissuwa M. Response to zinc deficiency of two rice lines with contrasting tolerance is determined by root growth maintenance and organic acid exudation rates, and not by zinc-transporter activity. The New Phytologist. 186: 400-14. PMID 20100202 DOI: 10.1111/J.1469-8137.2009.03177.X |
0.335 |
|
| 2010 |
McCouch SR, Zhao K, Wright M, Tung CW, Ebana K, Thomson M, Reynolds A, Wang D, Declerck G, Ali ML, Mcclung A, Eizenga G, Bustamante C. Development of genome-wide SNP assays for rice Breeding Science. 60: 524-535. DOI: 10.1270/Jsbbs.60.524 |
0.683 |
|
| 2010 |
Tung CW, Zhao K, Wright MH, Ali ML, Jung J, Kimball J, Tyagi W, Thomson MJ, McNally K, Leung H, Kim H, Ahn SN, Reynolds A, Scheffler B, Eizenga G, et al. Development of a research platform for dissecting phenotype-genotype associations in rice (Oryza spp.) Rice. 3: 205-217. DOI: 10.1007/S12284-010-9056-5 |
0.664 |
|
| 2010 |
Thomson MJ, de Ocampo M, Egdane J, Rahman MA, Sajise AG, Adorada DL, Tumimbang-Raiz E, Blumwald E, Seraj ZI, Singh RK, Gregorio GB, Ismail AM. Characterizing the Saltol quantitative trait locus for salinity tolerance in rice Rice. 3: 148-160. DOI: 10.1007/S12284-010-9053-8 |
0.497 |
|
| 2010 |
Thomson MJ, Ismail AM, McCouch SR, Mackill DJ. Marker assisted breeding Abiotic Stress Adaptation in Plants: Physiological, Molecular and Genomic Foundation. 451-469. DOI: 10.1007/978-90-481-3112-9_20 |
0.601 |
|
| 2010 |
Ismail AM, Thomson MJ, Vergara GV, Rahman MA, Singh RK, Gregorio GB, Mackill DJ. Designing resilient rice varieties for coastal deltas using modern breeding tools Tropical Deltas and Coastal Zones: Food Production, Communities and Environment At the Land-Water Interface. 154-165. |
0.385 |
|
| 2009 |
McCouch S, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Moncada P, Xiao J, Coburn J, Fraker E, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, et al. Discovery and transfer of trait-enhancing alleles from wild species International Rice Research Notes. 31. DOI: 10.3860/Irrn.V31I2.1155 |
0.612 |
|
| 2009 |
Thomson MJ, Polato NR, Prasetiyono J, Trijatmiko KR, Silitonga TS, McCouch SR. Genetic diversity of isolated populations of Indonesian landraces of rice (Oryza sativa L.) collected in East Kalimantan on the Island of Borneo Rice. 2: 80-92. DOI: 10.1007/S12284-009-9023-1 |
0.615 |
|
| 2007 |
Ismail AM, Heuer S, Thomson MJ, Wissuwa M. Genetic and genomic approaches to develop rice germplasm for problem soils. Plant Molecular Biology. 65: 547-70. PMID 17703278 DOI: 10.1007/S11103-007-9215-2 |
0.443 |
|
| 2007 |
Sweeney MT, Thomson MJ, Cho YG, Park YJ, Williamson SH, Bustamante CD, McCouch SR. Global dissemination of a single mutation conferring white pericarp in rice. Plos Genetics. 3: e133. PMID 17696613 DOI: 10.1371/Journal.Pgen.0030133 |
0.581 |
|
| 2007 |
Thomson MJ, Septiningsih EM, Suwardjo F, Santoso TJ, Silitonga TS, McCouch SR. Genetic diversity analysis of traditional and improved Indonesian rice (Oryza sativa L.) germplasm using microsatellite markers. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 114: 559-68. PMID 17136372 DOI: 10.1007/S00122-006-0457-1 |
0.781 |
|
| 2007 |
McCouch SR, Sweeney M, Li J, Jiang H, Thomson M, Septiningsih E, Edwards J, Moncada P, Xiao J, Garris A, Tai T, Martinez C, Tohme J, Sugiono M, McClung A, et al. Through the genetic bottleneck: O. rufipogon as a source of trait-enhancing alleles for O. sativa Euphytica. 154: 317-339. DOI: 10.1007/S10681-006-9210-8 |
0.81 |
|
| 2006 |
Thomson MJ, Edwards JD, Septiningsih EM, Harrington SE, McCouch SR. Substitution mapping of dth1.1, a flowering-time quantitative trait locus (QTL) associated with transgressive variation in rice, reveals multiple sub-QTL. Genetics. 172: 2501-14. PMID 16452146 DOI: 10.1534/Genetics.105.050500 |
0.787 |
|
| 2006 |
Sweeney MT, Thomson MJ, Pfeil BE, McCouch S. Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice. The Plant Cell. 18: 283-94. PMID 16399804 DOI: 10.1105/Tpc.105.038430 |
0.641 |
|
| 2004 |
Li J, Thomson M, McCouch SR. Fine mapping of a grain-weight quantitative trait locus in the pericentromeric region of rice chromosome 3. Genetics. 168: 2187-95. PMID 15611185 DOI: 10.1534/Genetics.104.034165 |
0.635 |
|
| 2003 |
Thomson MJ, Tai TH, McClung AM, Lai XH, Hinga ME, Lobos KB, Xu Y, Martinez CP, McCouch SR. Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 107: 479-93. PMID 12736777 DOI: 10.1007/S00122-003-1270-8 |
0.695 |
|
| 2002 |
Hessler TG, Thomson MJ, Benscher D, Nachit MM, Sorrells ME. Association of a Lipoxygenase Locus,
Lpx‐B1
, with Variation in Lipoxygenase Activity in Durum Wheat Seeds Crop Science. 42: 1695-1700. DOI: 10.2135/Cropsci2002.1695 |
0.478 |
|
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