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Jay R. Hesselberth, Ph.D. - Publications

Affiliations: 
1996-1998 Biochemistry University of Iowa, Iowa City, IA 
 1998-2003 Chemistry and Biochemistry University of Texas at Austin, Austin, Texas, U.S.A. 
 2003-2010 Genome Sciences University of Washington, Seattle, Seattle, WA 
 2010-2020 Biochemistry and Molecular Genetics University of Colorado School of Medicine, Aurora, CO, United States 
Area:
Molecular Biology
Website:
https://hesselberthlab.org
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39 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 White LK, Strugar SM, MacFadden A, Hesselberth JR. Nanopore sequencing of internal 2'-PO4 modifications installed by RNA repair. Rna (New York, N.Y.). PMID 36854608 DOI: 10.1261/rna.079290.122  0.311
2022 White LK, Hesselberth JR. Modification mapping by nanopore sequencing. Frontiers in Genetics. 13: 1037134. PMID 36386798 DOI: 10.3389/fgene.2022.1037134  0.322
2020 Ancar R, Li Y, Kindler E, Cooper DA, Ransom M, Thiel V, Weiss SR, Hesselberth JR, Barton DJ. Physiologic RNA Targets and Refined Sequence Specificity of Coronavirus EndoU. Rna (New York, N.Y.). PMID 32989044 DOI: 10.1261/rna.076604.120  0.303
2020 Gillen AE, Riemondy KA, Amani V, Griesinger AM, Gilani A, Venkataraman S, Madhavan K, Prince E, Sanford B, Hankinson TC, Handler MH, Vibhakar R, Jones KL, Mitra S, Hesselberth JR, et al. Single-Cell RNA Sequencing of Childhood Ependymoma Reveals Neoplastic Cell Subpopulations That Impact Molecular Classification and Etiology. Cell Reports. 32: 108023. PMID 32783945 DOI: 10.1016/J.Celrep.2020.108023  0.319
2020 Fu R, Gillen AE, Sheridan RM, Tian C, Daya M, Hao Y, Hesselberth JR, Riemondy KA. clustifyr: an R package for automated single-cell RNA sequencing cluster classification. F1000research. 9: 223. PMID 32765839 DOI: 10.12688/F1000Research.22969.2  0.352
2019 Cherry PD, Peach SE, Hesselberth JR. Multiple decay events target mRNA during splicing to regulate the unfolded protein response. Elife. 8. PMID 30874502 DOI: 10.7554/Elife.42262  0.354
2018 Riemondy KA, Ransom M, Alderman C, Gillen AE, Fu R, Finlay-Schultz J, Kirkpatrick GD, Di Paola J, Kabos P, Sartorius CA, Hesselberth JR. Recovery and analysis of transcriptome subsets from pooled single-cell RNA-seq libraries. Nucleic Acids Research. PMID 30496484 DOI: 10.1093/Nar/Gky1204  0.373
2018 Riemondy KA, Gillen AE, White EA, Bogren LK, Hesselberth JR, Martin SL. Dynamic temperature-sensitive A-to-I RNA editing in the brain of a heterothermic mammal during hibernation. Rna (New York, N.Y.). PMID 30065024 DOI: 10.1261/Rna.066522.118  0.356
2017 Cherry PD, White LK, York K, Hesselberth JR. Genetic bypass of essential RNA repair enzymes in budding yeast. Rna (New York, N.Y.). PMID 29212664 DOI: 10.1261/Rna.061788.117  0.411
2017 Sclafani RA, Hesselberth JR. O Cdc7 kinase where art thou? Current Genetics. PMID 29134273 DOI: 10.1007/S00294-017-0782-8  0.303
2017 Rossbach D, Bryan DS, Hesselberth JR, Sclafani R. Localization of Cdc7 Protein Kinase During DNA Replication in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 28924058 DOI: 10.1534/G3.117.300223  0.313
2016 Gillen AE, Yamamoto TM, Kline E, Hesselberth JR, Kabos P. Improvements to the HITS-CLIP protocol eliminate widespread mispriming artifacts. Bmc Genomics. 17: 338. PMID 27150721 DOI: 10.1186/S12864-016-2675-5  0.423
2016 Clingan J, Eckard S, Cooper D, Ramos H, Guillen J, Canard B, Gale M, Hesselberth J, Barton D, Stetson D. Abstract B133: Regulation of antiviral immune responses by RNase L Cancer Immunology Research. 4. DOI: 10.1158/2326-6066.Imm2016-B133  0.376
2015 Peach SE, York K, Hesselberth JR. Global analysis of RNA cleavage by 5'-hydroxyl RNA sequencing. Nucleic Acids Research. PMID 26001965 DOI: 10.1093/Nar/Gkv536  0.419
2015 Cooper DA, Banerjee S, Chakrabarti A, García-Sastre A, Hesselberth JR, Silverman RH, Barton DJ. RNase L targets distinct sites in influenza A virus RNAs. Journal of Virology. 89: 2764-76. PMID 25540362 DOI: 10.1128/Jvi.02953-14  0.354
2014 Kosmaczewski SG, Edwards TJ, Han SM, Eckwahl MJ, Meyer BI, Peach S, Hesselberth JR, Wolin SL, Hammarlund M. The RtcB RNA ligase is an essential component of the metazoan unfolded protein response. Embo Reports. 15: 1278-85. PMID 25366321 DOI: 10.15252/Embr.201439531  0.416
2014 Garrey SM, Katolik A, Prekeris M, Li X, York K, Bernards S, Fields S, Zhao R, Damha MJ, Hesselberth JR. A homolog of lariat-debranching enzyme modulates turnover of branched RNA. Rna (New York, N.Y.). 20: 1337-48. PMID 24919400 DOI: 10.1261/Rna.044602.114  0.572
2014 Cooper DA, Jha BK, Silverman RH, Hesselberth JR, Barton DJ. Ribonuclease L and metal-ion-independent endoribonuclease cleavage sites in host and viral RNAs. Nucleic Acids Research. 42: 5202-16. PMID 24500209 DOI: 10.1093/Nar/Gku118  0.372
2013 Hesselberth JR. Lives that introns lead after splicing. Wiley Interdisciplinary Reviews. Rna. 4: 677-91. PMID 23881603 DOI: 10.1002/Wrna.1187  0.386
2013 Li X, Zhang W, Xu T, Ramsey J, Zhang L, Hill R, Hansen KC, Hesselberth JR, Zhao R. Comprehensive in vivo RNA-binding site analyses reveal a role of Prp8 in spliceosomal assembly. Nucleic Acids Research. 41: 3805-18. PMID 23393194 DOI: 10.1093/Nar/Gkt062  0.366
2011 Balakrishnan I, Yang X, Torok-Storb B, Hesselberth J, Pillai MM. High Throughput Sequencing Following Cross-Linked Immune Precipitation (HITS-CLIP) of Argonaute (AGO) Identifies Mir-9 As a Regulator of MMP2 in the Marrow Microenvironment (ME) Blood. 118: 2392-2392. DOI: 10.1182/Blood.V118.21.2392.2392  0.334
2010 Cooper SJ, Finney GL, Brown SL, Nelson SK, Hesselberth J, MacCoss MJ, Fields S. High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection. Genome Research. 20: 1288-96. PMID 20610602 DOI: 10.1101/Gr.105825.110  0.519
2010 Chen X, Hoffman MM, Bilmes JA, Hesselberth JR, Noble WS. A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data. Bioinformatics (Oxford, England). 26: i334-42. PMID 20529925 DOI: 10.1093/Bioinformatics/Btq175  0.335
2010 Schutz K, Hesselberth JR, Fields S. Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates. Rna (New York, N.Y.). 16: 621-31. PMID 20075163 DOI: 10.1261/Rna.1934910  0.701
2009 Hesselberth JR, Chen X, Zhang Z, Sabo PJ, Sandstrom R, Reynolds AP, Thurman RE, Neph S, Kuehn MS, Noble WS, Fields S, Stamatoyannopoulos JA. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting. Nature Methods. 6: 283-9. PMID 19305407 DOI: 10.1038/Nmeth.1313  0.528
2007 Zhang Z, Hesselberth JR, Fields S. Genome-wide identification of spliced introns using a tiling microarray. Genome Research. 17: 503-9. PMID 17351133 DOI: 10.1101/Gr.6049107  0.559
2007 Hall B, Hesselberth JR, Ellington AD. Computational selection of nucleic acid biosensors via a slip structure model. Biosensors & Bioelectronics. 22: 1939-47. PMID 16996258 DOI: 10.1016/J.Bios.2006.08.019  0.666
2006 Hesselberth JR, Miller JP, Golob A, Stajich JE, Michaud GA, Fields S. Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins. Genome Biology. 7: R30. PMID 16606443 DOI: 10.1186/Gb-2006-7-4-R30  0.498
2006 Brown V, Brown RA, Ozinsky A, Hesselberth JR, Fields S. Binding specificity of Toll-like receptor cytoplasmic domains. European Journal of Immunology. 36: 742-53. PMID 16482509 DOI: 10.1002/Eji.200535158  0.505
2005 LaCount DJ, Vignali M, Chettier R, Phansalkar A, Bell R, Hesselberth JR, Schoenfeld LW, Ota I, Sahasrabudhe S, Kurschner C, Fields S, Hughes RE. A protein interaction network of the malaria parasite Plasmodium falciparum. Nature. 438: 103-7. PMID 16267556 DOI: 10.1038/Nature04104  0.629
2004 Lee JF, Hesselberth JR, Meyers LA, Ellington AD. Aptamer database. Nucleic Acids Research. 32: D95-100. PMID 14681367 DOI: 10.1093/nar/gkh094  0.552
2003 Hesselberth JR, Robertson MP, Knudsen SM, Ellington AD. Simultaneous detection of diverse analytes with an aptazyme ligase array. Analytical Biochemistry. 312: 106-12. PMID 12531194 DOI: 10.1016/S0003-2697(02)00441-4  0.719
2002 Hesselberth JR, Ellington AD. A (ribo) switch in the paradigms of genetic regulation. Nature Structural Biology. 9: 891-3. PMID 12447352 DOI: 10.1038/Nsb1202-891  0.482
2002 Cox JC, Hayhurst A, Hesselberth J, Bayer TS, Georgiou G, Ellington AD. Automated selection of aptamers against protein targets translated in vitro: from gene to aptamer. Nucleic Acids Research. 30: e108. PMID 12384610 DOI: 10.1093/Nar/Gnf107  0.56
2001 Robertson MP, Hesselberth JR, Ellington AD. Optimization and optimality of a short ribozyme ligase that joins non-Watson-Crick base pairings. Rna (New York, N.Y.). 7: 513-23. PMID 11345430 DOI: 10.1017/S1355838201002199  0.622
2001 Hoffman D, Hesselberth J, Ellington AD. Switching nucleic acids for antibodies. Nature Biotechnology. 19: 313-4. PMID 11283579 DOI: 10.1038/86678  0.451
2000 Hesselberth J, Robertson MP, Jhaveri S, Ellington AD. In vitro selection of nucleic acids for diagnostic applications. Journal of Biotechnology. 74: 15-25. PMID 10943569 DOI: 10.1016/S1389-0352(99)00005-7  0.726
2000 Hesselberth JR, Miller D, Robertus J, Ellington AD. In vitro selection of RNA molecules that inhibit the activity of ricin A-chain. The Journal of Biological Chemistry. 275: 4937-42. PMID 10671531 DOI: 10.1074/Jbc.275.7.4937  0.578
1999 Ellington AD, Hesselberth J, Jhaveri S, Robertson MP. Combinatorial methods: aptamers and aptazymes Proceedings of Spie. 3858: 126-134. DOI: 10.1117/12.372908  0.728
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