Mattheos A. Koffas - Publications

Affiliations: 
Chemical and Biological Engineering State University of New York, Buffalo, Buffalo, NY, United States 
Area:
Chemical Engineering, Microbiology Biology, Pharmaceutical Chemistry

77 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Badri A, Williams A, Xia K, Linhardt RJ, Koffas MAG. Increased 3'-phosphoadenosine-5'-phosphosulfate levels in engineered Escherichia coli cell lysate facilitates in vitro synthesis of Chondroitin Sulfate A. Biotechnology Journal. e1800436. PMID 31180182 DOI: 10.1002/biot.201800436  0.32
2019 Akdemir H, Silva A, Zha J, Zagorevski DV, Koffas MAG. Production of pyranoanthocyanins using Escherichia coli co-cultures. Metabolic Engineering. PMID 31125607 DOI: 10.1016/j.ymben.2019.05.008  0.32
2019 Zang Y, Zha J, Wu X, Zheng Z, Ouyang J, Koffas MAG. In vitro Naringenin Biosynthesis from p-Coumaric Acid Using Recombinant Enzymes. Journal of Agricultural and Food Chemistry. PMID 30919618 DOI: 10.1021/acs.jafc.9b00413  0.32
2019 Cress BF, Bhaskar U, Vaidyanathan D, Williams A, Cai C, Liu X, Fu L, M-Chari V, Zhang F, Mousa SA, Dordick JS, Koffas MAG, Linhardt RJ. Heavy heparin: A stable isotope-enriched, chemoenzymatically-synthesized, poly-component drug. Angewandte Chemie (International Ed. in English). PMID 30870573 DOI: 10.1002/anie.201900768  0.32
2019 Zhang X, Lai L, Xu G, Zhang X, Shi J, Koffas MAG, Xu Z. Rewiring the Central Metabolic Pathway for High-Yield L-Serine Production in Corynebacterium Glutamicum by Using Glucose. Biotechnology Journal. e1800497. PMID 30791233 DOI: 10.1002/biot.201800497  0.6
2019 Roell GW, Zha J, Carr RR, Koffas MA, Fong SS, Tang YJ. Engineering microbial consortia by division of labor. Microbial Cell Factories. 18: 35. PMID 30736778 DOI: 10.1186/s12934-019-1083-3  0.32
2019 Zhou S, Lyu Y, Li H, Koffas MAG, Zhou J. Fine-tuning the (2S)-naringenin synthetic pathway using an iterative high-throughput balancing strategy. Biotechnology and Bioengineering. PMID 30684358 DOI: 10.1002/bit.26941  0.52
2018 Gupta M, Zha J, Zhang X, Jung GY, Linhardt RJ, Koffas MAG. Production of Deuterated Cyanidin 3--Glucoside from Recombinant . Acs Omega. 3: 11643-11648. PMID 30320269 DOI: 10.1021/acsomega.8b01134  0.6
2018 Zha J, Zang Y, Mattozzi M, Plassmeier J, Gupta M, Wu X, Clarkson S, Koffas MAG. Metabolic engineering of Corynebacterium glutamicum for anthocyanin production. Microbial Cell Factories. 17: 143. PMID 30217197 DOI: 10.1186/s12934-018-0990-z  0.32
2018 Kim SG, Noh MH, Lim HG, Jang S, Jang S, Koffas MAG, Jung GY. Molecular parts and genetic circuits for metabolic engineering of microorganisms. Fems Microbiology Letters. PMID 30052915 DOI: 10.1093/femsle/fny187  0.32
2018 Zhao M, Huang D, Zhang X, Koffas MAG, Zhou J, Deng Y. Metabolic engineering of Escherichia coli for producing adipic acid through the reverse adipate-degradation pathway. Metabolic Engineering. PMID 29625225 DOI: 10.1016/j.ymben.2018.04.002  0.6
2018 Zhang X, Xu G, Shi J, Koffas MAG, Xu Z. Microbial Production of l-Serine from Renewable Feedstocks. Trends in Biotechnology. PMID 29500004 DOI: 10.1016/j.tibtech.2018.02.001  0.6
2017 Zha J, Koffas MAG. Production of anthocyanins in metabolically engineered microorganisms: Current status and perspectives. Synthetic and Systems Biotechnology. 2: 259-266. PMID 29552650 DOI: 10.1016/j.synbio.2017.10.005  0.32
2017 Chouhan S, Sharma K, Zha J, Guleria S, Koffas MAG. Recent Advances in the Recombinant Biosynthesis of Polyphenols. Frontiers in Microbiology. 8: 2259. PMID 29201020 DOI: 10.3389/fmicb.2017.02259  0.4
2017 Fang Z, Jones JA, Zhou J, Koffas MAG. Engineering Escherichia coli co-cultures for production of curcuminoids from glucose. Biotechnology Journal. PMID 29149547 DOI: 10.1002/biot.201700576  0.52
2017 He W, Zhu Y, Shirke A, Sun X, Liu J, Gross RA, Koffas MAG, Linhardt RJ, Li M. Expression of chondroitin-4-O-sulfotransferase in Escherichia coli and Pichia pastoris. Applied Microbiology and Biotechnology. PMID 28761999 DOI: 10.1007/s00253-017-8411-5  0.32
2017 Jang S, Jang S, Xiu Y, Kang TJ, Lee SH, Koffas MAG, Jung GY. Development of Artificial Riboswitches for Monitoring of Naringenin In Vivo. Acs Synthetic Biology. PMID 28749656 DOI: 10.1021/acssynbio.7b00128  0.32
2017 Jones JA, Vernacchio VR, Collins SM, Shirke AN, Xiu Y, Englaender JA, Cress BF, McCutcheon CC, Linhardt RJ, Gross RA, Koffas MAG. Complete Biosynthesis of Anthocyanins Using E. coli Polycultures. Mbio. 8. PMID 28588129 DOI: 10.1128/mBio.00621-17  0.32
2017 Xiu Y, Jang S, Jones JA, Zill NA, Linhardt RJ, Yuan Q, Jung GY, Koffas MAG. Naringenin-Responsive Riboswitch-Based Fluorescent Biosensor Module for Escherichia coli Co-cultures. Biotechnology and Bioengineering. PMID 28543037 DOI: 10.1002/bit.26340  0.32
2017 Vaidyanathan D, Williams A, Dordick JS, Koffas MAG, Linhardt RJ. Engineered heparins as new anticoagulant drugs. Bioengineering & Translational Medicine. 2: 17-30. PMID 28516163 DOI: 10.1002/btm2.10042  0.32
2017 Cress BF, Leitz QD, Kim DC, Amore TD, Suzuki JY, Linhardt RJ, Koffas MA. CRISPRi-mediated metabolic engineering of E. coli for O-methylated anthocyanin production. Microbial Cell Factories. 16: 10. PMID 28095853 DOI: 10.1186/s12934-016-0623-3  0.32
2017 Englaender JA, Jones JA, Cress BF, Kuhlman TE, Linhardt RJ, Koffas MA. Effect of Genomic Integration Location on Heterologous Protein Expression and Metabolic Engineering in E. coli. Acs Synthetic Biology. PMID 28055177 DOI: 10.1021/acssynbio.6b00350  0.32
2016 Ibrahim MH, Cress BF, Linhardt RJ, Koffas MA, Gross RA. Draft Genome Sequence of Bacillus subtilis Ia1a, a New Strain for Poly-γ-Glutamic Acid and Exopolysaccharide Production. Genome Announcements. 4. PMID 27979935 DOI: 10.1128/genomeA.01361-16  0.32
2016 Englaender JA, Zhu Y, Shirke AN, Lin L, Liu X, Zhang F, Gross RA, Koffas MA, Linhardt RJ. Expression and secretion of glycosylated heparin biosynthetic enzymes using Komagataella pastoris. Applied Microbiology and Biotechnology. PMID 27975137 DOI: 10.1007/s00253-016-8047-x  0.32
2016 Zhang X, Khalidi O, Kim SY, Wang R, Schultz V, Cress BF, Gross RA, Koffas MA, Linhardt RJ. Synthesis and biological evaluation of 5,7-dihydroxyflavanone derivatives as antimicrobial agents. Bioorganic & Medicinal Chemistry Letters. PMID 27210435 DOI: 10.1016/j.bmcl.2016.05.003  0.6
2016 Cress BF, Jones JA, Kim DC, Leitz QD, Englaender JA, Collins SM, Linhardt RJ, Koffas MA. Rapid generation of CRISPR/dCas9-regulated, orthogonally repressible hybrid T7-lac promoters for modular, tuneable control of metabolic pathway fluxes in Escherichia coli. Nucleic Acids Research. PMID 27079979 DOI: 10.1093/nar/gkw231  0.96
2016 Wu G, Yan Q, Jones JA, Tang YJ, Fong SS, Koffas MA. Metabolic Burden: Cornerstones in Synthetic Biology and Metabolic Engineering Applications. Trends in Biotechnology. PMID 26996613 DOI: 10.1016/j.tibtech.2016.02.010  0.96
2016 Pandey RP, Parajuli P, Koffas MA, Sohng JK. Microbial production of natural and non-natural flavonoids: Pathway engineering, directed evolution and systems/synthetic biology. Biotechnology Advances. PMID 26946281 DOI: 10.1016/j.biotechadv.2016.02.012  0.96
2016 Jones JA, Vernacchio VR, Sinkoe AL, Collins SM, Ibrahim MH, Lachance DM, Hahn J, Koffas MA. "Experimental and computational optimization of an Escherichia coli co-culture for the efficient production of flavonoids". Metabolic Engineering. PMID 26860871 DOI: 10.1016/j.ymben.2016.01.006  0.96
2015 Wang J, Guleria S, Koffas MA, Yan Y. Microbial production of value-added nutraceuticals. Current Opinion in Biotechnology. 37: 97-104. PMID 26716360 DOI: 10.1016/j.copbio.2015.11.003  0.96
2015 Jones JA, Collins SM, Lachance DM, Vernacchio VR, Koffas MA. "Optimization of naringenin and p-coumaric acid hydroxylation using the native E. coli hydroxylase complex, HpaBC". Biotechnology Progress. PMID 26488898 DOI: 10.1002/btpr.2185  0.96
2015 Lim CG, Wong L, Bhan N, Dvora H, Xu P, Venkiteswaran S, Koffas MA. Development of a Recombinant Escherichia coli Strain for Overproduction of the Plant Pigment Anthocyanin. Applied and Environmental Microbiology. 81: 6276-84. PMID 26150456 DOI: 10.1128/AEM.01448-15  0.96
2015 Mora-Pale M, Bhan N, Masuko S, James P, Wood J, McCallum S, Linhardt RJ, Dordick JS, Koffas MA. Antimicrobial mechanism of resveratrol-trans-dihydrodimer produced from peroxidase-catalyzed oxidation of resveratrol. Biotechnology and Bioengineering. PMID 26109045 DOI: 10.1002/bit.25686  0.96
2015 Jones JA, Vernacchio VR, Lachance DM, Lebovich M, Fu L, Shirke AN, Schultz VL, Cress B, Linhardt RJ, Koffas MA. ePathOptimize: A Combinatorial Approach for Transcriptional Balancing of Metabolic Pathways. Scientific Reports. 5: 11301. PMID 26062452 DOI: 10.1038/srep11301  0.96
2015 Cress BF, Toparlak ÖD, Guleria S, Lebovich M, Stieglitz JT, Englaender JA, Jones JA, Linhardt RJ, Koffas MA. CRISPathBrick: Modular Combinatorial Assembly of Type II-A CRISPR Arrays for dCas9-Mediated Multiplex Transcriptional Repression in E. coli. Acs Synthetic Biology. 4: 987-1000. PMID 25822415 DOI: 10.1021/acssynbio.5b00012  0.96
2015 Trantas EA, Koffas MA, Xu P, Ververidis F. When plants produce not enough or at all: metabolic engineering of flavonoids in microbial hosts. Frontiers in Plant Science. 6: 7. PMID 25688249 DOI: 10.3389/fpls.2015.00007  0.36
2015 Zhao S, Jones JA, Lachance DM, Bhan N, Khalidi O, Venkataraman S, Wang Z, Koffas MA. Improvement of catechin production in Escherichia coli through combinatorial metabolic engineering. Metabolic Engineering. 28: 43-53. PMID 25527438 DOI: 10.1016/j.ymben.2014.12.002  0.96
2015 Jones JA, Toparlak ÖD, Koffas MA. Metabolic pathway balancing and its role in the production of biofuels and chemicals. Current Opinion in Biotechnology. 33: 52-59. PMID 25445548 DOI: 10.1016/j.copbio.2014.11.013  0.96
2015 Bhan N, Li L, Cai C, Xu P, Linhardt RJ, Koffas MA. Enzymatic formation of a resorcylic acid by creating a structure-guided single-point mutation in stilbene synthase. Protein Science : a Publication of the Protein Society. 24: 167-73. PMID 25402946 DOI: 10.1002/pro.2600  0.96
2014 Mora-Pale M, Sanchez-Rodriguez SP, Linhardt RJ, Dordick JS, Koffas MA. Biochemical strategies for enhancing the in vivo production of natural products with pharmaceutical potential. Current Opinion in Biotechnology. 25: 86-94. PMID 24484885 DOI: 10.1016/j.copbio.2013.09.009  0.96
2014 Cress BF, Englaender JA, He W, Kasper D, Linhardt RJ, Koffas MA. Masquerading microbial pathogens: capsular polysaccharides mimic host-tissue molecules. Fems Microbiology Reviews. 38: 660-97. PMID 24372337 DOI: 10.1111/1574-6976.12056  0.96
2014 Xu P, Wang W, Li L, Bhan N, Zhang F, Koffas MA. Design and kinetic analysis of a hybrid promoter-regulator system for malonyl-CoA sensing in Escherichia coli. Acs Chemical Biology. 9: 451-8. PMID 24191643 DOI: 10.1021/cb400623m  0.36
2013 Xu P, Koffas MA. Assembly of multi-gene pathways and combinatorial pathway libraries through ePathBrick vectors. Methods in Molecular Biology (Clifton, N.J.). 1073: 107-29. PMID 23996443 DOI: 10.1007/978-1-62703-625-2_10  0.36
2013 Mora-Pale M, Sanchez-Rodriguez SP, Linhardt RJ, Dordick JS, Koffas MA. Metabolic engineering and in vitro biosynthesis of phytochemicals and non-natural analogues. Plant Science : An International Journal of Experimental Plant Biology. 210: 10-24. PMID 23849109 DOI: 10.1016/j.plantsci.2013.05.005  0.32
2013 Cress BF, Greene ZR, Linhardt RJ, Koffas MA. Draft Genome Sequence of Escherichia coli Strain ATCC 23506 (Serovar O10:K5:H4). Genome Announcements. 1: e0004913. PMID 23516192 DOI: 10.1128/genomeA.00049-13  0.32
2013 Cress BF, Linhardt RJ, Koffas MA. Draft Genome Sequence of Escherichia coli Strain Nissle 1917 (Serovar O6:K5:H1). Genome Announcements. 1: e0004713. PMID 23516190 DOI: 10.1128/genomeA.00047-13  0.32
2013 Cress BF, Greene ZR, Linhardt RJ, Koffas MA. Draft Genome Sequence of Escherichia coli Strain ATCC 23502 (Serovar O5:K4:H4). Genome Announcements. 1: e0004613. PMID 23516189 DOI: 10.1128/genomeA.00046-13  0.32
2013 Bhan N, Xu P, Koffas MA. Pathway and protein engineering approaches to produce novel and commodity small molecules. Current Opinion in Biotechnology. 24: 1137-43. PMID 23498845 DOI: 10.1016/j.copbio.2013.02.019  0.36
2013 Xu P, Gu Q, Wang W, Wong L, Bower AG, Collins CH, Koffas MA. Modular optimization of multi-gene pathways for fatty acids production in E. coli. Nature Communications. 4: 1409. PMID 23361000 DOI: 10.1038/ncomms2425  0.96
2013 Xu P, Bhan N, Koffas MA. Engineering plant metabolism into microbes: from systems biology to synthetic biology. Current Opinion in Biotechnology. 24: 291-9. PMID 22985679 DOI: 10.1016/j.copbio.2012.08.010  0.36
2012 Xu P, Vansiri A, Bhan N, Koffas MA. ePathBrick: a synthetic biology platform for engineering metabolic pathways in E. coli. Acs Synthetic Biology. 1: 256-66. PMID 23651248 DOI: 10.1021/sb300016b  0.36
2012 Malla S, Koffas MA, Kazlauskas RJ, Kim BG. Production of 7-O-methyl aromadendrin, a medicinally valuable flavonoid, in Escherichia coli. Applied and Environmental Microbiology. 78: 684-94. PMID 22101053 DOI: 10.1128/AEM.06274-11  0.96
2011 Fowler ZL, Shah K, Panepinto JC, Jacobs A, Koffas MA. Development of non-natural flavanones as antimicrobial agents. Plos One. 6: e25681. PMID 22039419 DOI: 10.1371/journal.pone.0025681  0.96
2011 Xu P, Ranganathan S, Fowler ZL, Maranas CD, Koffas MA. Genome-scale metabolic network modeling results in minimal interventions that cooperatively force carbon flux towards malonyl-CoA. Metabolic Engineering. 13: 578-87. PMID 21763447 DOI: 10.1016/j.ymben.2011.06.008  0.96
2011 Lim CG, Fowler ZL, Hueller T, Schaffer S, Koffas MA. High-yield resveratrol production in engineered Escherichia coli. Applied and Environmental Microbiology. 77: 3451-60. PMID 21441338 DOI: 10.1128/AEM.02186-10  0.96
2011 Fowler ZL, Baron CM, Panepinto JC, Koffas MA. Melanization of flavonoids by fungal and bacterial laccases. Yeast (Chichester, England). 28: 181-8. PMID 21360730 DOI: 10.1002/yea.1829  0.96
2010 Chemler JA, Lim CG, Daiss JL, Koffas MA. A versatile microbial system for biosynthesis of novel polyphenols with altered estrogen receptor binding activity. Chemistry & Biology. 17: 392-401. PMID 20416510 DOI: 10.1016/j.chembiol.2010.03.010  0.96
2010 Chemler JA, Fowler ZL, McHugh KP, Koffas MA. Improving NADPH availability for natural product biosynthesis in Escherichia coli by metabolic engineering. Metabolic Engineering. 12: 96-104. PMID 19628048 DOI: 10.1016/j.ymben.2009.07.003  0.96
2009 Fowler ZL, Gikandi WW, Koffas MA. Increased malonyl coenzyme A biosynthesis by tuning the Escherichia coli metabolic network and its application to flavanone production. Applied and Environmental Microbiology. 75: 5831-9. PMID 19633125 DOI: 10.1128/AEM.00270-09  0.96
2009 Fowler ZL, Koffas MA. Biosynthesis and biotechnological production of flavanones: current state and perspectives. Applied Microbiology and Biotechnology. 83: 799-808. PMID 19475406 DOI: 10.1007/s00253-009-2039-z  0.96
2009 Chemier JA, Fowler ZL, Koffas MA, Leonard E. Trends in microbial synthesis of natural products and biofuels. Advances in Enzymology and Related Areas of Molecular Biology. 76: 151-217. PMID 18990830 DOI: 10.1002/9780470392881.ch4  0.96
2008 Chemler JA, Koffas MA. Metabolic engineering for plant natural product biosynthesis in microbes. Current Opinion in Biotechnology. 19: 597-605. PMID 18992815 DOI: 10.1016/j.copbio.2008.10.011  0.96
2008 Leonard E, Yan Y, Fowler ZL, Li Z, Lim CG, Lim KH, Koffas MA. Strain improvement of recombinant Escherichia coli for efficient production of plant flavonoids. Molecular Pharmaceutics. 5: 257-65. PMID 18333619 DOI: 10.1021/mp7001472  0.96
2008 Yan Y, Li Z, Koffas MA. High-yield anthocyanin biosynthesis in engineered Escherichia coli. Biotechnology and Bioengineering. 100: 126-40. PMID 18023053 DOI: 10.1002/bit.21721  1
2007 Chemler JA, Lock LT, Koffas MA, Tzanakakis ES. Standardized biosynthesis of flavan-3-ols with effects on pancreatic beta-cell insulin secretion. Applied Microbiology and Biotechnology. 77: 797-807. PMID 17938905 DOI: 10.1007/s00253-007-1227-y  0.96
2007 Leonard E, Koffas MA. Engineering of artificial plant cytochrome P450 enzymes for synthesis of isoflavones by Escherichia coli. Applied and Environmental Microbiology. 73: 7246-51. PMID 17905887 DOI: 10.1128/AEM.01411-07  1
2007 Yan Y, Huang L, Koffas MA. Biosynthesis of 5-deoxyflavanones in microorganisms. Biotechnology Journal. 2: 1250-62. PMID 17806100 DOI: 10.1002/biot.200700119  1
2007 Leonard E, Lim KH, Saw PN, Koffas MA. Engineering central metabolic pathways for high-level flavonoid production in Escherichia coli. Applied and Environmental Microbiology. 73: 3877-86. PMID 17468269 DOI: 10.1128/AEM.00200-07  1
2007 Chemler JA, Yan Y, Leonard E, Koffas MA. Combinatorial mutasynthesis of flavonoid analogues from acrylic acids in microorganisms. Organic Letters. 9: 1855-8. PMID 17447772 DOI: 10.1021/ol0703736  0.96
2006 Chemler JA, Yan Y, Koffas MA. Biosynthesis of isoprenoids, polyunsaturated fatty acids and flavonoids in Saccharomyces cerevisiae. Microbial Cell Factories. 5: 20. PMID 16719921 DOI: 10.1186/1475-2859-5-20  0.96
2006 Leonard E, Yan Y, Koffas MA. Functional expression of a P450 flavonoid hydroxylase for the biosynthesis of plant-specific hydroxylated flavonols in Escherichia coli. Metabolic Engineering. 8: 172-81. PMID 16384722 DOI: 10.1016/j.ymben.2005.11.001  1
2006 Leonard E, Chemler J, Lim KH, Koffas MA. Expression of a soluble flavone synthase allows the biosynthesis of phytoestrogen derivatives in Escherichia coli. Applied Microbiology and Biotechnology. 70: 85-91. PMID 16025328 DOI: 10.1007/s00253-005-0059-x  1
2005 Leonard E, Yan Y, Lim KH, Koffas MA. Investigation of two distinct flavone synthases for plant-specific flavone biosynthesis in Saccharomyces cerevisiae. Applied and Environmental Microbiology. 71: 8241-8. PMID 16332809 DOI: 10.1128/AEM.71.12.8241-8248.2005  1
2005 Yan Y, Kohli A, Koffas MA. Biosynthesis of natural flavanones in Saccharomyces cerevisiae. Applied and Environmental Microbiology. 71: 5610-3. PMID 16151160 DOI: 10.1128/AEM.71.9.5610-5613.2005  1
2005 Yan Y, Chemler J, Huang L, Martens S, Koffas MA. Metabolic engineering of anthocyanin biosynthesis in Escherichia coli. Applied and Environmental Microbiology. 71: 3617-23. PMID 16000769 DOI: 10.1128/AEM.71.7.3617-3623.2005  1
2003 Koffas MA, Jung GY, Stephanopoulos G. Engineering metabolism and product formation in Corynebacterium glutamicum by coordinated gene overexpression. Metabolic Engineering. 5: 32-41. PMID 12749842  0.32
2002 Koffas MA, Jung GY, Aon JC, Stephanopoulos G. Effect of pyruvate carboxylase overexpression on the physiology of Corynebacterium glutamicum. Applied and Environmental Microbiology. 68: 5422-8. PMID 12406733  0.32
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