| Year |
Citation |
Score |
| 2020 |
Luo Y, Lovelett RJ, Price JV, Radhakrishnan D, Barnthouse K, Hu P, Schaefer E, Cunningham J, Lee KH, Shivappa RB, Ogunnaike BA. Modeling the Effect of Amino Acids and Copper on Monoclonal Antibody Productivity and Glycosylation: A Modular Approach. Biotechnology Journal. e2000261. PMID 32875683 DOI: 10.1002/Biot.202000261 |
0.628 |
|
| 2020 |
Wells E, Song L, Greer M, Luo Y, Kurian V, Ogunnaike B, Robinson AS. Media supplementation for targeted manipulation of monoclonal antibody galactosylation and fucosylation. Biotechnology and Bioengineering. PMID 32662879 DOI: 10.1002/Bit.27496 |
0.448 |
|
| 2020 |
Staehle MM, O'Sullivan S, Vadigepalli R, Kernan KF, Gonye GE, Ogunnaike BA, Schwaber JS. Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Frontiers in Neuroscience. 14: 375. PMID 32477043 DOI: 10.3389/Fnins.2020.00375 |
0.742 |
|
| 2019 |
Ogunnaike BA. 110th Anniversary: Process and Systems Engineering Perspectives on Personalized Medicine and the Design of Effective Treatment of Diseases Industrial & Engineering Chemistry Research. 58: 20357-20369. DOI: 10.1021/Acs.Iecr.9B04228 |
0.322 |
|
| 2018 |
Cook D, Achanta S, Hoek JB, Ogunnaike BA, Vadigepalli R. Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics. Bmc Systems Biology. 12: 86. PMID 30285726 DOI: 10.1186/S12918-018-0605-7 |
0.35 |
|
| 2015 |
Park J, Ogunnaike B, Schwaber J, Vadigepalli R. Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability. Progress in Biophysics and Molecular Biology. 117: 87-98. PMID 25433230 DOI: 10.1016/J.Pbiomolbio.2014.11.004 |
0.326 |
|
| 2014 |
St Amand MM, Radhakrishnan D, Robinson AS, Ogunnaike BA. Identification of manipulated variables for a glycosylation control strategy. Biotechnology and Bioengineering. 111: 1957-70. PMID 24728980 DOI: 10.1002/Bit.25251 |
0.303 |
|
| 2014 |
Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R. Inputs drive cell phenotype variability. Genome Research. 24: 930-41. PMID 24671852 DOI: 10.1101/Gr.161802.113 |
0.309 |
|
| 2014 |
St Amand MM, Tran K, Radhakrishnan D, Robinson AS, Ogunnaike BA. Controllability analysis of protein glycosylation in CHO cells. Plos One. 9: e87973. PMID 24498415 DOI: 10.1371/Journal.Pone.0087973 |
0.351 |
|
| 2014 |
Gou Q, Wetzel MD, Ogunnaike BA. Quantification of layered silicate dispersion in polymer nanocomposites Polymer (United Kingdom). 55: 4216-4225. DOI: 10.1016/J.Polymer.2014.05.047 |
0.488 |
|
| 2013 |
Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS. Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. Alcoholism, Clinical and Experimental Research. 37: E88-100. PMID 22827539 DOI: 10.1111/J.1530-0277.2012.01910.X |
0.737 |
|
| 2012 |
Welf ES, Naik UP, Ogunnaike BA. A spatial model for integrin clustering as a result of feedback between integrin activation and integrin binding. Biophysical Journal. 103: 1379-89. PMID 22995511 DOI: 10.1016/J.Bpj.2012.08.021 |
0.746 |
|
| 2012 |
Birtwistle MR, Rauch J, Kiyatkin A, Aksamitiene E, Dobrzyński M, Hoek JB, Kolch W, Ogunnaike BA, Kholodenko BN. Emergence of bimodal cell population responses from the interplay between analog single-cell signaling and protein expression noise. Bmc Systems Biology. 6: 109. PMID 22920937 DOI: 10.1186/1752-0509-6-109 |
0.704 |
|
| 2012 |
Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS. Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcoholism, Clinical and Experimental Research. 36: 1688-700. PMID 22486438 DOI: 10.1111/J.1530-0277.2012.01791.X |
0.746 |
|
| 2012 |
Garge SC, Wetzel MD, Ogunnaike BA. Control-relevant model identification of reactive extrusion processes Journal of Process Control. 22: 1457-1467. DOI: 10.1016/J.Jprocont.2012.01.020 |
0.698 |
|
| 2011 |
Welf ES, Naik UP, Ogunnaike BA. Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells. Bmc Biophysics. 4: 15. PMID 21827670 DOI: 10.1186/2046-1682-4-15 |
0.743 |
|
| 2011 |
St. Amand MM, Robinson AS, Ogunnaike BA. Toward Online Control of Glycosylation in MAbs Computer Aided Chemical Engineering. 29: 1331-1335. DOI: 10.1016/B978-0-444-54298-4.50045-3 |
0.326 |
|
| 2010 |
Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R. Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. Bmc Systems Biology. 4: 171. PMID 21167049 DOI: 10.1186/1752-0509-4-171 |
0.313 |
|
| 2010 |
Nakakuki T, Birtwistle MR, Saeki Y, Yumoto N, Ide K, Nagashima T, Brusch L, Ogunnaike BA, Okada-Hatakeyama M, Kholodenko BN. Ligand-specific c-Fos expression emerges from the spatiotemporal control of ErbB network dynamics. Cell. 141: 884-96. PMID 20493519 DOI: 10.1016/J.Cell.2010.03.054 |
0.697 |
|
| 2010 |
Ogunnaike BA, Gelmi CA, Edwards JS. A probabilistic framework for microarray data analysis: fundamental probability models and statistical inference. Journal of Theoretical Biology. 264: 211-22. PMID 20170665 DOI: 10.1016/J.Jtbi.2010.02.021 |
0.305 |
|
| 2010 |
Garge SC, Wetzel MD, Ogunnaike BA. Inference-based scheme for controlling product end-use properties in reactive extrusion processes Industrial and Engineering Chemistry Research. 49: 8021-8034. DOI: 10.1021/Ie100435S |
0.675 |
|
| 2009 |
Welf ES, Ogunnaike BA, Naik UP. Quantitative statistical description of integrin clusters in adherent cells. Iet Systems Biology. 3: 307-16. PMID 21028922 DOI: 10.1049/Iet-Syb.2009.0009 |
0.748 |
|
| 2009 |
Mukati K, Rasch M, Ogunnaike BA. An alternative structure for next generation regulatory controllers. Part II: Stability analysis, tuning rules and experimental validation Journal of Process Control. 19: 272-287. DOI: 10.1016/J.Jprocont.2008.03.004 |
0.319 |
|
| 2008 |
Su AJ, Yu CC, Ogunnaike BA. On the interaction between measurement strategy and control performance in semiconductor manufacturing Journal of Process Control. 18: 266-276. DOI: 10.1016/J.Jprocont.2007.07.005 |
0.307 |
|
| 2008 |
Birtwistle MR, Millili PG, Ogunnaike BA. A first-principles model for eukaryotic DNA synthesis dynamics and the implications for cell cycle analysis Aiche Annual Meeting, Conference Proceedings. |
0.57 |
|
| 2008 |
Birtwistle MR, Ogunnaike BA. Development and analysis of models for cell-to-cell variability in protein expression Aiche Annual Meeting, Conference Proceedings. |
0.588 |
|
| 2007 |
Birtwistle MR, Hatakeyama M, Yumoto N, Ogunnaike BA, Hoek JB, Kholodenko BN. Ligand-dependent responses of the ErbB signaling network: experimental and modeling analyses. Molecular Systems Biology. 3: 144. PMID 18004277 DOI: 10.1038/Msb4100188 |
0.697 |
|
| 2007 |
Samant A, Ogunnaike BA, Vlachos DG. A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks. Bmc Bioinformatics. 8: 175. PMID 17524148 DOI: 10.1186/1471-2105-8-175 |
0.479 |
|
| 2007 |
Garge SC, Wetzel MD, Ogunnaike BA. Quantification of the melting process in a co-rotating twin-screw extruder: A hybrid modeling approach Polymer Engineering and Science. 47: 1040-1051. DOI: 10.1002/Pen.20783 |
0.689 |
|
| 2007 |
Malcolm A, Polan J, Zhang L, Ogunnaike BA, Linninger AA. Integrating systems design and control using dynamic flexibility analysis Aiche Journal. 53: 2048-2061. DOI: 10.1002/Aic.11218 |
0.321 |
|
| 2007 |
Birtwistle MR, Kholodenko BN, Kiyatkin A, Hoek JB, Ogunnaike BA. Experimental investigation and probabilistic modeling of switch-like signal transduction systems Aiche Annual Meeting, Conference Proceedings. |
0.669 |
|
| 2006 |
Kauffman KJ, Ogunnaike BA, Edwards JS. Designing experiments that aid in the identification of regulatory networks. Briefings in Functional Genomics & Proteomics. 4: 331-42. PMID 17202124 DOI: 10.1093/Bfgp/Eli004 |
0.329 |
|
| 2006 |
Yalamanchili N, Zak DE, Ogunnaike BA, Schwaber JS, Kriete A, Kholodenko BN. Quantifying gene network connectivity in silico: scalability and accuracy of a modular approach. Systems Biology. 153: 236-46. PMID 16986625 DOI: 10.1049/ip-syb:20050090 |
0.685 |
|
| 2006 |
Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS. Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biology. 7: R48. PMID 16784547 DOI: 10.1186/Gb-2006-7-6-R48 |
0.647 |
|
| 2006 |
Hao H, Zak DE, Sauter T, Schwaber J, Ogunnaike BA. Modeling the VPAC2-activated cAMP/PKA signaling pathway: from receptor to circadian clock gene induction. Biophysical Journal. 90: 1560-71. PMID 16339878 DOI: 10.1529/Biophysj.105.065250 |
0.668 |
|
| 2006 |
Garge SC, Wetzel MD, Ogunnaike BA. MODELING FOR CONTROL OF REACTIVE EXTRUSION PROCESSES Ifac Proceedings Volumes. 39: 1089-1094. DOI: 10.3182/20060402-4-Br-2902.01089 |
0.354 |
|
| 2006 |
Ogunnaike BA, Mukati K. An alternative structure for next generation regulatory controllers: Part I: Basic theory for design, development and implementation Journal of Process Control. 16: 499-509. DOI: 10.1016/J.Jprocont.2005.08.001 |
0.314 |
|
| 2006 |
Birtwistle MR, Hatakeyama M, Yumoto N, Hoek JB, Kholodenko BN, Ogunnaike BA. Modeling the ErbB signaling network in MCF-7 breast cancer cells and analysis of ligand-dependent responses Aiche Annual Meeting, Conference Proceedings. |
0.681 |
|
| 2006 |
Garge SC, Ogunnaike BA, Wetzel MD. An empirical model for melting in a co-rotating twin screw extruder Annual Technical Conference - Antec, Conference Proceedings. 2: 971-978. |
0.625 |
|
| 2005 |
Zak DE, Vadigepalli R, Gonye GE, Doyle FJ, Schwaber JS, Ogunnaike BA. Unconventional systems analysis problems in molecular biology: A case study in gene regulatory network modeling Computers and Chemical Engineering. 29: 547-563. DOI: 10.1016/J.Compchemeng.2004.08.016 |
0.659 |
|
| 2005 |
Zak DE, Hao H, Miller GM, Vadigepalli R, Ogunnaike BA, Schwaber JS. Systems analysis of context-dependent epidermal growth factor receptor signaling in the circadian pacemaker Aiche Annual Meeting, Conference Proceedings. 11675-11676. |
0.603 |
|
| 2005 |
Garge SC, Wetzel MD, Ogunnaike BA. On identification and control of reactive extrusion processes Aiche Annual Meeting, Conference Proceedings. 6785-6806. |
0.648 |
|
| 2004 |
Pearson R, Ogunnaike B. Target-Set Control Ifac Proceedings Volumes. 37: 373-378. DOI: 10.1016/S1474-6670(17)38760-8 |
0.329 |
|
| 2004 |
Birtwistle MR, Ogunnaike BA, Lombardo T. Analysis and optimization of cell-cycle specific cancer chemotherapy Aiche Annual Meeting, Conference Proceedings. 8771-8773. |
0.545 |
|
| 2004 |
Miller GM, Zak DE, Schwaber JS, Ogunnaike BA. Modeling and identification of the gene regulatory network describing the liver response to corticosteroids Aiche Annual Meeting, Conference Proceedings. 8765-8767. |
0.644 |
|
| 2003 |
Brendel RJ, Ogunnaike BA, Dhurjati PS. Nonlinear PI controllers based on low-order empirical process models Industrial and Engineering Chemistry Research. 42: 4668-4677. DOI: 10.1021/Ie0300934 |
0.324 |
|
| 2001 |
Wayne Bequette B, Ogunnaike BA. Chemical process control education and practice Ieee Control Systems Magazine. 21: 10-17. DOI: 10.1109/37.915397 |
0.304 |
|
| 2001 |
Parker RS, Heemstra D, Doyle FJ, Pearson RK, Ogunnaike BA. The identification of nonlinear models for process control using tailored "plant-friendly" input sequences Journal of Process Control. 11: 237-250. DOI: 10.1016/S0959-1524(00)00050-0 |
0.319 |
|
| 2000 |
Pottmann M, Ogunnaike BA, Adetayo AA, Ennis BJ. Model-based control of a granulation system Powder Technology. 108: 192-201. DOI: 10.1016/S0032-5910(99)00220-X |
0.303 |
|
| 1999 |
Adetayo A, Ogunnaike BA, Pottmann M. Developing an effective control strategy for granulation processes Kona Powder and Particle Journal. 17: 183-189. DOI: 10.14356/Kona.1999025 |
0.316 |
|
| 1998 |
Russell SA, Robertson DG, Lee JH, Ogunnaike BA. Control of product quality for batch nylon 6,6 autoclaves Chemical Engineering Science. 53: 3685-3702. DOI: 10.1016/S0009-2509(98)00148-1 |
0.308 |
|
| 1998 |
Chikkula Y, Lee JH, Ogunnaike BA. Dynamically scheduled MPC of nonlinear processes using hinging hyperplane models Aiche Journal. 44: 2658-2674. DOI: 10.1002/Aic.690441208 |
0.34 |
|
| 1998 |
Russell SA, Kesavan P, Lee JH, Ogunnaike BA. Recursive data-based prediction and control of batch product quality Aiche Journal. 44: 2442-2458. DOI: 10.1002/Aic.690441112 |
0.326 |
|
| 1997 |
Chien IL, Ogunnaike BA. Modeling and control of a temperature-based high-purity distillation column Chemical Engineering Communications. 158: 71-105. DOI: 10.1080/00986449708936583 |
0.319 |
|
| 1996 |
Pearson RK, Ogunnaike BA, Doyle FJ. Identification of structurally constrained second-order volterra models Ieee Transactions On Signal Processing. 44: 2837-2846. DOI: 10.1109/78.542441 |
0.309 |
|
| 1996 |
Pearson RK, Ogunnaike BA. Geometric Model Predictive Control: A Practical Approach to Uncertain Industrial Processes Ifac Proceedings Volumes. 29: 5847-5852. DOI: 10.1016/S1474-6670(17)58616-4 |
0.313 |
|
| 1996 |
Pottmann M, Henson MA, Ogunnaike BA, Schwaber JS. A parallel control strategy abstracted from the baroreceptor reflex Chemical Engineering Science. 51: 931-945. DOI: 10.1016/0009-2509(95)00338-X |
0.317 |
|
| 1996 |
Maner BR, Doyle FJ, Ogunnaike BA, Pearson RK. Nonlinear model predictive control of a simulated multivariable polymerization reactor using second-order Volterra models Automatica. 32: 1285-1301. DOI: 10.1016/0005-1098(96)00086-6 |
0.32 |
|
| 1995 |
Ogunnaike BA. The Role of CACSD in Contemporary Industrial Process Control Ieee Control Systems. 15: 41-47. DOI: 10.1109/37.375282 |
0.307 |
|
| 1995 |
Doyle FJ, Ogunnaike BA, Pearson RK. Nonlinear model-based control using second-order Volterra models Automatica. 31: 697-714. DOI: 10.1016/0005-1098(94)00150-H |
0.307 |
|
| 1995 |
Henson MA, Ogunnaike BA, Schwaber JS. Habituating control strategies for process control Aiche Journal. 41: 604-618. DOI: 10.1002/Aic.690410318 |
0.331 |
|
| 1994 |
Ogunnaike BA. On-line modelling and predictive control of an industrial terpolymerization reactor International Journal of Control. 59: 711-729. DOI: 10.1080/00207179408923101 |
0.314 |
|
| 1994 |
Henson MA, Ogunnaike BA, Schwaber JS, Doyle FJ. The baroreceptor reflex: A biological control system with applications in chemical process control Industrial and Engineering Chemistry Research. 33: 2453-2466. DOI: 10.1021/Ie00034A030 |
0.352 |
|
| 1994 |
Pearson RK, Ogunnaike BA. Detection of Unmodelled Disturbances Effects by Coherence Analysis Ifac Proceedings Volumes. 27: 457-462. DOI: 10.1016/S1474-6670(17)48192-4 |
0.315 |
|
| 1994 |
Ogunnaike BA, Pearson RK, Samardzija N, Bomberger JD. Low Order Empirical Modeling for Nonlinear Systems Ifac Proceedings Volumes. 27: 41-46. DOI: 10.1016/S1474-6670(17)48127-4 |
0.312 |
|
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