Vikas Bansal, Ph.D. - Publications

Affiliations: 
2008 Computer Science and Engineering University of California, San Diego, La Jolla, CA 
Area:
Computer Science, Bioinformatics Biology

30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Edge P, Bansal V. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Nature Communications. 10: 4660. PMID 31604920 DOI: 10.1038/s41467-019-12493-y  0.56
2018 Bakhtiari M, Shleizer-Burko S, Gymrek M, Bansal V, Bafna V. Targeted genotyping of variable number tandem repeats with adVNTR. Genome Research. PMID 30352806 DOI: 10.1101/gr.235119.118  0.96
2017 Chu WK, Edge P, Lee HS, Bansal V, Bafna V, Huang X, Zhang K. Ultraaccurate genome sequencing and haplotyping of single human cells. Proceedings of the National Academy of Sciences of the United States of America. PMID 29078313 DOI: 10.1073/pnas.1707609114  0.96
2016 Edge P, Bafna V, Bansal V. HapCUT2: robust and accurate haplotype assembly for diverse sequencing technologies. Genome Research. PMID 27940952 DOI: 10.1101/gr.213462.116  0.96
2016 Patel A, Edge P, Selvaraj S, Bansal V, Bafna V. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms. Nucleic Acids Research. PMID 27105843 DOI: 10.1093/nar/gkw281  0.96
2015 Bansal V, Libiger O. Fast individual ancestry inference from DNA sequence data leveraging allele frequencies for multiple populations. Bmc Bioinformatics. 16: 4. PMID 25592880 DOI: 10.1186/s12859-014-0418-7  0.96
2014 Bansal V, Dorn C, Grunert M, Klaassen S, Hetzer R, Berger F, Sperling SR. Outlier-based identification of copy number variations using targeted resequencing in a small cohort of patients with Tetralogy of Fallot. Plos One. 9: e85375. PMID 24400131 DOI: 10.1371/journal.pone.0085375  0.96
2013 Selvaraj S, R Dixon J, Bansal V, Ren B. Whole-genome haplotype reconstruction using proximity-ligation and shotgun sequencing. Nature Biotechnology. 31: 1111-8. PMID 24185094 DOI: 10.1038/nbt.2728  0.96
2012 Torkamani A, Pham P, Libiger O, Bansal V, Zhang G, Scott-Van Zeeland AA, Tewhey R, Topol EJ, Schork NJ. Clinical implications of human population differences in genome-wide rates of functional genotypes. Frontiers in Genetics. 3: 211. PMID 23125845 DOI: 10.3389/fgene.2012.00211  0.96
2012 Tewhey R, Cannavino CR, Leake JA, Bansal V, Topol EJ, Torkamani A, Bradley JS, Schork NJ. Genetic structure of community acquired methicillin-resistant Staphylococcus aureus USA300. Bmc Genomics. 13: 508. PMID 23009684 DOI: 10.1186/1471-2164-13-508  0.96
2011 Bansal V, Libiger O. A probabilistic method for the detection and genotyping of small indels from population-scale sequence data. Bioinformatics (Oxford, England). 27: 2047-53. PMID 21653520 DOI: 10.1093/bioinformatics/btr344  0.96
2011 Bansal V, Tewhey R, Leproust EM, Schork NJ. Efficient and cost effective population resequencing by pooling and in-solution hybridization. Plos One. 6: e18353. PMID 21479135 DOI: 10.1371/journal.pone.0018353  0.96
2011 Lo C, Bashir A, Bansal V, Bafna V. Strobe sequence design for haplotype assembly. Bmc Bioinformatics. 12: S24. PMID 21342554 DOI: 10.1186/1471-2105-12-S1-S24  0.96
2011 Tewhey R, Bansal V, Torkamani A, Topol EJ, Schork NJ. The importance of phase information for human genomics. Nature Reviews. Genetics. 12: 215-23. PMID 21301473 DOI: 10.1038/nrg2950  0.96
2011 Bansal V, Tewhey R, Topol EJ, Schork NJ. The next phase in human genetics. Nature Biotechnology. 29: 38-9. PMID 21221098 DOI: 10.1038/nbt.1757  0.96
2011 Bansal V, Libiger O, Torkamani A, Schork NJ. An application and empirical comparison of statistical analysis methods for associating rare variants to a complex phenotype. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 76-87. PMID 21121035  0.96
2010 Harismendy O, Bansal V, Bhatia G, Nakano M, Scott M, Wang X, Dib C, Turlotte E, Sipe JC, Murray SS, Deleuze JF, Bafna V, Topol EJ, Frazer KA. Population sequencing of two endocannabinoid metabolic genes identifies rare and common regulatory variants associated with extreme obesity and metabolite level. Genome Biology. 11: R118. PMID 21118518 DOI: 10.1186/gb-2010-11-11-r118  0.96
2010 Bhatia G, Bansal V, Harismendy O, Schork NJ, Topol EJ, Frazer K, Bafna V. A covering method for detecting genetic associations between rare variants and common phenotypes. Plos Computational Biology. 6: e1000954. PMID 20976246 DOI: 10.1371/journal.pcbi.1000954  0.96
2010 Bansal V, Libiger O, Torkamani A, Schork NJ. Statistical analysis strategies for association studies involving rare variants. Nature Reviews. Genetics. 11: 773-85. PMID 20940738 DOI: 10.1038/nrg2867  0.96
2010 Bashir A, Bansal V, Bafna V. Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance. Bmc Genomics. 11: 385. PMID 20565853 DOI: 10.1186/1471-2164-11-385  0.96
2010 Bansal V. A statistical method for the detection of variants from next-generation resequencing of DNA pools. Bioinformatics (Oxford, England). 26: i318-24. PMID 20529923 DOI: 10.1093/bioinformatics/btq214  0.96
2010 Bansal V, Harismendy O, Tewhey R, Murray SS, Schork NJ, Topol EJ, Frazer KA. Accurate detection and genotyping of SNPs utilizing population sequencing data. Genome Research. 20: 537-45. PMID 20150320 DOI: 10.1101/gr.100040.109  0.96
2009 Schork NJ, Bansal V. Not so lost in the genetic crowd. Nature Genetics. 41: 1163-4. PMID 19862007 DOI: 10.1038/ng1109-1163  0.96
2008 Bansal V, Bafna V. HapCUT: an efficient and accurate algorithm for the haplotype assembly problem. Bioinformatics (Oxford, England). 24: i153-9. PMID 18689818 DOI: 10.1093/bioinformatics/btn298  0.96
2008 Bansal V, Halpern AL, Axelrod N, Bafna V. An MCMC algorithm for haplotype assembly from whole-genome sequence data. Genome Research. 18: 1336-46. PMID 18676820 DOI: 10.1101/gr.077065.108  0.96
2007 Gusfield D, Bansal V, Bafna V, Song YS. A decomposition theory for phylogenetic networks and incompatible characters. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 1247-72. PMID 18047426 DOI: 10.1089/cmb.2006.0137  0.96
2007 Levy S, Sutton G, Ng PC, Feuk L, Halpern AL, Walenz BP, Axelrod N, Huang J, Kirkness EF, Denisov G, Lin Y, MacDonald JR, Pang AW, Shago M, Stockwell TB, ... ... Bansal V, et al. The diploid genome sequence of an individual human. Plos Biology. 5: e254. PMID 17803354 DOI: 10.1371/journal.pbio.0050254  0.96
2007 Bansal V, Bashir A, Bafna V. Evidence for large inversion polymorphisms in the human genome from HapMap data. Genome Research. 17: 219-30. PMID 17185644 DOI: 10.1101/gr.5774507  0.96
2006 Bafna V, Bansal V. Inference about recombination from haplotype data: lower bounds and recombination hotspots. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 13: 501-21. PMID 16597254 DOI: 10.1089/cmb.2006.13.501  0.96
2004 Bafna V, Bansal V. The number of recombination events in a sample history: conflict graph and lower bounds. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 1: 78-90. PMID 17048383 DOI: 10.1109/TCBB.2004.23  0.96
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