Buhm Han, Ph.D. - Publications

2009 Computer Science and Engineering University of California, San Diego, La Jolla, CA 
 2014- University of Ulsan College of Medicine 
Computer Science

64 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Li J, Kong N, Han B, Sul JH. Rare variants regulate expression of nearby individual genes in multiple tissues. Plos Genetics. 17: e1009596. PMID 34061836 DOI: 10.1371/journal.pgen.1009596  0.8
2021 Cook S, Choi W, Lim H, Luo Y, Kim K, Jia X, Raychaudhuri S, Han B. Accurate imputation of human leukocyte antigens with CookHLA. Nature Communications. 12: 1264. PMID 33627654 DOI: 10.1038/s41467-021-21541-5  0.4
2020 Lee CH, Shi H, Pasaniuc B, Eskin E, Han B. PLEIO: a method to map and interpret pleiotropic loci with GWAS summary statistics. American Journal of Human Genetics. PMID 33352115 DOI: 10.1016/j.ajhg.2020.11.017  0.8
2020 Choi W, Luo Y, Raychaudhuri S, Han B. HATK: HLA Analysis Toolkit. Bioinformatics (Oxford, England). PMID 32735319 DOI: 10.1093/Bioinformatics/Btaa684  0.4
2019 Kim K, Baik H, Jang CS, Roh JK, Eskin E, Han B. Genomic GPS: using genetic distance from individuals to public data for genomic analysis without disclosing personal genomes. Genome Biology. 20: 175. PMID 31455387 DOI: 10.1186/S13059-019-1792-2  0.8
2019 Pouget JG, Han B, Wu Y, Mignot E, Ollila HM, Barker J, Spain S, Dand N, Trembath R, Martin J, Mayes MD, Bossini-Castillo L, López-Isac E, Jin Y, et al. Cross-disorder analysis of schizophrenia and 19 immune-mediated diseases identifies shared genetic risk. Human Molecular Genetics. PMID 31211845 DOI: 10.1093/Hmg/Ddz145  0.4
2018 Han B, Akiyama M, Kim KK, Oh H, Choi H, Lee CH, Jung S, Lee HS, Kim EE, Cook S, Haritunians T, Yamazaki K, Park SH, Ye BD, McGovern DPB, et al. Amino acid position 37 of HLA-DRβ1 affects susceptibility to Crohn's disease in Asians. Human Molecular Genetics. PMID 30084967 DOI: 10.1093/Hmg/Ddy285  0.68
2018 Lee HS, Yang SK, Hong M, Jung S, Kim BM, Moon JW, Park SH, Ye BD, Oh SH, Kim KM, Yoon YS, Yu CS, Baek J, Lee CH, Han B, et al. An intergenic variant rs9268877 between HLA-DRA and HLA-DRB contributes to the clinical course and long-term outcome of ulcerative colitis. Journal of Crohn's & Colitis. PMID 29905830 DOI: 10.1093/Ecco-Jcc/Jjy080  0.68
2018 Kang EY, Lee CH, Furlotte NA, Joo JWJ, Kostem E, Zaitlen N, Eskin E, Han B. An Association Mapping Framework To Account for Potential Sex Difference in Genetic Architectures. Genetics. PMID 29752291 DOI: 10.1534/Genetics.117.300501  0.8
2017 Kim EE, Lee S, Lee CH, Oh H, Song K, Han B. FOLD: a method to optimize power in meta-analysis of genetic association studies with overlapping subjects. Bioinformatics (Oxford, England). PMID 29036405 DOI: 10.1093/Bioinformatics/Btx463  0.68
2017 Lee CH, Eskin E, Han B. Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects. Bioinformatics (Oxford, England). 33: i379-i388. PMID 28881976 DOI: 10.1093/Bioinformatics/Btx242  0.8
2017 Duong D, Gai L, Snir S, Kang EY, Han B, Sul JH, Eskin E. Applying meta-analysis to genotype-tissue expression data from multiple tissues to identify eQTLs and increase the number of eGenes. Bioinformatics (Oxford, England). 33: i67-i74. PMID 28881962 DOI: 10.1093/Bioinformatics/Btx227  0.8
2016 Lee CH, Cook S, Lee JS, Han B. Comparison of Two Meta-Analysis Methods: Inverse-Variance-Weighted Average and Weighted Sum of Z-Scores. Genomics & Informatics. 14: 173-180. PMID 28154508 DOI: 10.5808/Gi.2016.14.4.173  0.68
2016 Hinks A, Bowes J, Cobb J, Ainsworth HC, Marion MC, Comeau ME, Sudman M, Han B, Becker ML, Bohnsack JF, de Bakker PI, Haas JP, Hazen M, Lovell DJ, et al. Fine-mapping the MHC locus in juvenile idiopathic arthritis (JIA) reveals genetic heterogeneity corresponding to distinct adult inflammatory arthritic diseases. Annals of the Rheumatic Diseases. PMID 27998952 DOI: 10.1136/Annrheumdis-2016-210025  0.4
2016 Kang EY, Martin L, Mangul S, Isvilanonda W, Zou J, Ben-David E, Han B, Lusis AJ, Shifman S, Eskin E. Discovering SNPs Regulating Human Gene Expression Using Allele Specific Expression from RNA-Seq Data. Genetics. PMID 27765809 DOI: 10.1534/Genetics.115.177246  0.8
2016 Yang SK, Hong M, Oh H, Low HQ, Jung S, Ahn S, Kim Y, Baek J, Lee CH, Kim E, Kim KM, Ye BD, Kim KJ, Park SH, Lee HS, ... ... Han B, et al. Identification of Loci at 1q21 and 16q23 That Affect Susceptibility to Inflammatory Bowel Disease in Koreans. Gastroenterology. PMID 27569725 DOI: 10.1053/J.Gastro.2016.08.025  0.68
2016 van 't Hof FN, Ruigrok YM, Lee CH, Ripke S, Anderson G, de Andrade M, Baas AF, Blankensteijn JD, Böttinger EP, Bown MJ, Broderick J, Bijlenga P, Carrell DS, Crawford DC, Crosslin DR, ... ... Han B, et al. Shared Genetic Risk Factors of Intracranial, Abdominal, and Thoracic Aneurysms. Journal of the American Heart Association. 5. PMID 27418160 DOI: 10.1161/Jaha.115.002603  0.68
2016 Prins BP, Abbasi A, Wong A, Vaez A, Nolte I, Franceschini N, Stuart PE, Guterriez Achury J, Mistry V, Bradfield JP, Valdes AM, Bras J, Shatunov A, ... ... Han B, et al. Investigating the Causal Relationship of C-Reactive Protein with 32 Complex Somatic and Psychiatric Outcomes: A Large-Scale Cross-Consortium Mendelian Randomization Study. Plos Medicine. 13: e1001976. PMID 27327646 DOI: 10.1371/Journal.Pmed.1001976  0.4
2016 Duong D, Zou J, Hormozdiari F, Sul JH, Ernst J, Han B, Eskin E. Using genomic annotations increases statistical power to detect eGenes. Bioinformatics (Oxford, England). 32: i156-i163. PMID 27307612 DOI: 10.1093/Bioinformatics/Btw272  0.8
2016 Hormozdiari F, Kang EY, Bilow M, Ben-David E, Vulpe C, McLachlan S, Lusis AJ, Han B, Eskin E. Imputing Phenotypes for Genome-wide Association Studies. American Journal of Human Genetics. PMID 27292110 DOI: 10.1016/J.Ajhg.2016.04.013  0.36
2016 Kang EY, Park Y, Li X, Segrè AV, Han B, Eskin E. ForestPMPlot: A Flexible Tool for Visualizing Heterogeneity between Studies in Meta-analysis. G3 (Bethesda, Md.). PMID 27194809 DOI: 10.1534/G3.116.029439  0.36
2016 Han B, Pouget JG, Slowikowski K, Stahl E, Lee CH, Diogo D, Hu X, Park YR, Kim E, Gregersen PK, Dahlqvist SR, Worthington J, Martin J, Eyre S, Klareskog L, et al. A method to decipher pleiotropy by detecting underlying heterogeneity driven by hidden subgroups applied to autoimmune and neuropsychiatric diseases. Nature Genetics. PMID 27182969 DOI: 10.1038/Ng.3572  0.68
2016 Joo JW, Hormozdiari F, Han B, Eskin E. Multiple testing correction in linear mixed models. Genome Biology. 17: 62. PMID 27039378 DOI: 10.1186/S13059-016-0903-6  0.8
2016 Ellinghaus D, Jostins L, Spain SL, Cortes A, Bethune J, Han B, Park YR, Raychaudhuri S, Pouget JG, Hübenthal M, Folseraas T, Wang Y, Esko T, Metspalu A, Westra HJ, et al. Analysis of five chronic inflammatory diseases identifies 27 new associations and highlights disease-specific patterns at shared loci. Nature Genetics. PMID 26974007 DOI: 10.1038/Ng.3528  0.8
2016 Han B, Duong D, Sul JH, de Bakker PI, Eskin E, Raychaudhuri S. A general framework for meta-analyzing dependent studies with overlapping subjects in association mapping. Human Molecular Genetics. PMID 26908615 DOI: 10.1093/Hmg/Ddw049  0.8
2016 Zhang S, Pang S, Wang P, Wang C, Han N, Liu B, Han B, Li Y, Anim-Larbi K. Antibiotic concentration and antibiotic-resistant bacteria in two shallow urban lakes after stormwater event. Environmental Science and Pollution Research International. PMID 26865482 DOI: 10.1007/s11356-016-6237-9  0.52
2015 Kwak SH, Kim YJ, Chae J, Lee CH, Han B, Kim JI, Jung HS, Cho YM, Park KS. Association of HLA Genotype and Fulminant Type 1 Diabetes in Koreans. Genomics & Informatics. 13: 126-31. PMID 26865843 DOI: 10.5808/Gi.2015.13.4.126  0.68
2015 Ombrello MJ, Remmers EF, Tachmazidou I, Grom A, Foell D, Haas JP, Martini A, Gattorno M, Özen S, Prahalad S, Zeft AS, Bohnsack JF, Mellins ED, Ilowite NT, Russo R, ... ... Han B, et al. HLA-DRB1*11 and variants of the MHC class II locus are strong risk factors for systemic juvenile idiopathic arthritis. Proceedings of the National Academy of Sciences of the United States of America. PMID 26598658 DOI: 10.1073/Pnas.1520779112  0.4
2015 Lenz TL, Deutsch AJ, Han B, Hu X, Okada Y, Eyre S, Knapp M, Zhernakova A, Huizinga TW, Abecasis G, Becker J, Boeckxstaens GE, Chen WM, Franke A, Gladman DD, et al. Widespread non-additive and interaction effects within HLA loci modulate the risk of autoimmune diseases. Nature Genetics. PMID 26258845 DOI: 10.1038/Ng.3379  0.4
2015 Hu X, Deutsch AJ, Lenz TL, Onengut-Gumuscu S, Han B, Chen WM, Howson JM, Todd JA, de Bakker PI, Rich SS, Raychaudhuri S. Additive and interaction effects at three amino acid positions in HLA-DQ and HLA-DR molecules drive type 1 diabetes risk. Nature Genetics. 47: 898-905. PMID 26168013 DOI: 10.1038/Ng.3353  0.36
2015 Trynka G, Westra HJ, Slowikowski K, Hu X, Xu H, Stranger BE, Klein RJ, Han B, Raychaudhuri S. Disentangling the Effects of Colocalizing Genomic Annotations to Functionally Prioritize Non-coding Variants within Complex-Trait Loci. American Journal of Human Genetics. 97: 139-52. PMID 26140449 DOI: 10.1016/J.Ajhg.2015.05.016  0.36
2015 Sul JH, Raj T, de Jong S, de Bakker PI, Raychaudhuri S, Ophoff RA, Stranger BE, Eskin E, Han B. Accurate and fast multiple-testing correction in eQTL studies. American Journal of Human Genetics. 96: 857-68. PMID 26027500 DOI: 10.1016/J.Ajhg.2015.04.012  0.36
2015 Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons DP, Worthington J, Young A, Hyrich KL, Morgan AW, Wilson AG, Isaacs JD, Raychaudhuri S, Barton A. Association of HLA-DRB1 haplotypes with rheumatoid arthritis severity, mortality, and treatment response. Jama. 313: 1645-56. PMID 25919528 DOI: 10.1001/Jama.2015.3435  0.36
2015 Yarwood A, Han B, Raychaudhuri S, Bowes J, Lunt M, Pappas DA, Kremer J, Greenberg JD, Plenge R, Worthington J, Barton A, Eyre S. A weighted genetic risk score using all known susceptibility variants to estimate rheumatoid arthritis risk. Annals of the Rheumatic Diseases. 74: 170-6. PMID 24092415 DOI: 10.1136/Annrheumdis-2013-204133  0.36
2015 Viatte S, Plant D, Han B, Fu B, Yarwood A, Thomson W, Symmons DPM, Worthington J, Young A, Hyrich KL, Morgan AW, Wilson AG, Isaacs JD, Raychaudhuri S, Barton A. O49. Personalized Genetic Medicine: Amino Acid Positions 11, 71 and 74 in HLA-DRB1 Predict Disease Severity, Mortality and Treatment Response in Rheumatoid Arthritis—Multi-Centre Prospective Cohort Studies Rheumatology. 54. DOI: 10.1093/Rheumatology/Kev087.001  0.4
2014 Dunstan SJ, Hue NT, Han B, Li Z, Tram TT, Sim KS, Parry CM, Chinh NT, Vinh H, Lan NP, Thieu NT, Vinh PV, Koirala S, Dongol S, Arjyal A, et al. Variation at HLA-DRB1 is associated with resistance to enteric fever. Nature Genetics. 46: 1333-6. PMID 25383971 DOI: 10.1038/Ng.3143  0.4
2014 Okada Y, Han B, Tsoi LC, Stuart PE, Ellinghaus E, Tejasvi T, Chandran V, Pellett F, Pollock R, Bowcock AM, Krueger GG, Weichenthal M, Voorhees JJ, Rahman P, Gregersen PK, et al. Fine mapping major histocompatibility complex associations in psoriasis and its clinical subtypes. American Journal of Human Genetics. 95: 162-72. PMID 25087609 DOI: 10.1016/J.Ajhg.2014.07.002  0.8
2014 Okada Y, Kim K, Han B, Pillai NE, Ong RT, Saw WY, Luo M, Jiang L, Yin J, Bang SY, Lee HS, Brown MA, Bae SC, Xu H, Teo YY, et al. Risk for ACPA-positive rheumatoid arthritis is driven by shared HLA amino acid polymorphisms in Asian and European populations. Human Molecular Genetics. 23: 6916-26. PMID 25070946 DOI: 10.1093/Hmg/Ddu387  0.4
2014 Joo JW, Sul JH, Han B, Ye C, Eskin E. Effectively identifying regulatory hotspots while capturing expression heterogeneity in gene expression studies. Genome Biology. 15: r61. PMID 24708878 DOI: 10.1186/Gb-2014-15-4-R61  0.8
2014 Han B, Diogo D, Eyre S, Kallberg H, Zhernakova A, Bowes J, Padyukov L, Okada Y, González-Gay MA, Rantapää-Dahlqvist S, Martin J, Huizinga TW, Plenge RM, Worthington J, Gregersen PK, et al. Fine mapping seronegative and seropositive rheumatoid arthritis to shared and distinct HLA alleles by adjusting for the effects of heterogeneity. American Journal of Human Genetics. 94: 522-32. PMID 24656864 DOI: 10.1016/J.Ajhg.2014.02.013  0.8
2014 Kang EY, Han B, Furlotte N, Joo JW, Shih D, Davis RC, Lusis AJ, Eskin E. Meta-analysis identifies gene-by-environment interactions as demonstrated in a study of 4,965 mice. Plos Genetics. 10: e1004022. PMID 24415945 DOI: 10.1371/Journal.Pgen.1004022  0.8
2014 Han B, Kang EY, Raychaudhuri S, de Bakker PI, Eskin E. Fast pairwise IBD association testing in genome-wide association studies. Bioinformatics (Oxford, England). 30: 206-13. PMID 24158599 DOI: 10.1093/Bioinformatics/Btt609  0.8
2013 Hu X, Kim H, Brennan PJ, Han B, Baecher-Allan CM, De Jager PL, Brenner MB, Raychaudhuri S. Application of user-guided automated cytometric data analysis to large-scale immunoprofiling of invariant natural killer T cells. Proceedings of the National Academy of Sciences of the United States of America. 110: 19030-5. PMID 24191009 DOI: 10.1073/Pnas.1318322110  0.8
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: inheritance path-based pedigree reconstruction algorithm using genotype data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 780-91. PMID 24093229 DOI: 10.1089/Cmb.2013.0080  0.8
2013 Sul JH, Han B, Ye C, Choi T, Eskin E. Effectively identifying eQTLs from multiple tissues by combining mixed model and meta-analytic approaches. Plos Genetics. 9: e1003491. PMID 23785294 DOI: 10.1371/Journal.Pgen.1003491  0.8
2013 Jia X, Han B, Onengut-Gumuscu S, Chen WM, Concannon PJ, Rich SS, Raychaudhuri S, de Bakker PI. Imputing amino acid polymorphisms in human leukocyte antigens. Plos One. 8: e64683. PMID 23762245 DOI: 10.1371/Journal.Pone.0064683  0.8
2013 Navon O, Sul JH, Han B, Conde L, Bracci PM, Riby J, Skibola CF, Eskin E, Halperin E. Rare variant association testing under low-coverage sequencing. Genetics. 194: 769-79. PMID 23636738 DOI: 10.1534/Genetics.113.150169  0.8
2013 He D, Han B, Eskin E. Hap-seq: an optimal algorithm for haplotype phasing with imputation using sequencing data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 20: 80-92. PMID 23383995 DOI: 10.1089/Cmb.2012.0091  0.8
2013 Trynka G, Sandor C, Han B, Xu H, Stranger BE, Liu XS, Raychaudhuri S. Chromatin marks identify critical cell types for fine mapping complex trait variants Nature Genetics. 45: 124-130. PMID 23263488 DOI: 10.1038/Ng.2504  0.8
2013 Scharf JM, Yu D, Mathews CA, Neale BM, Stewart SE, Fagerness JA, Evans P, Gamazon E, Edlund CK, Service SK, Tikhomirov A, Osiecki L, Illmann C, Pluzhnikov A, Konkashbaev A, ... ... Han B, et al. Genome-wide association study of Tourette's syndrome. Molecular Psychiatry. 18: 721-8. PMID 22889924 DOI: 10.1038/Mp.2012.69  0.8
2013 Yarwood A, Lunt M, Han B, Raychaudhuri S, Bowes J, Barton A, Eyre S, Raci. THU0010 A Weighted Genetic Risk Score Using 46 Loci to Predict Rheumatoid Arthritis Risk Annals of the Rheumatic Diseases. 72. DOI: 10.1136/Annrheumdis-2013-Eular.538  0.4
2013 He D, Wang Z, Han B, Parida L, Eskin E. IPED: Inheritance path based pedigree reconstruction algorithm using genotype data Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7821: 75-87. DOI: 10.1007/978-3-642-37195-0_7  0.8
2012 Darnell G, Duong D, Han B, Eskin E. Incorporating prior information into association studies. Bioinformatics (Oxford, England). 28: i147-53. PMID 22689754 DOI: 10.1093/Bioinformatics/Bts235  0.8
2012 Han B, Eskin E. Interpreting meta-analyses of genome-wide association studies. Plos Genetics. 8: e1002555. PMID 22396665 DOI: 10.1371/Journal.Pgen.1002555  0.8
2011 Sul JH, Han B, Eskin E. Increasing power of groupwise association test with likelihood ratio test. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 1611-24. PMID 21919745 DOI: 10.1089/Cmb.2011.0161  0.8
2011 Han B, Eskin E. Random-effects model aimed at discovering associations in meta-analysis of genome-wide association studies. American Journal of Human Genetics. 88: 586-98. PMID 21565292 DOI: 10.1016/J.Ajhg.2011.04.014  0.8
2011 Sul JH, Han B, He D, Eskin E. An optimal weighted aggregated association test for identification of rare variants involved in common diseases. Genetics. 188: 181-8. PMID 21368279 DOI: 10.1534/Genetics.110.125070  0.8
2011 Han B, Hackel BM, Eskin E. Postassociation cleaning using linkage disequilibrium information. Genetic Epidemiology. 35: 1-10. PMID 21181893 DOI: 10.1002/Gepi.20544  0.8
2010 Kirby A, Kang HM, Wade CM, Cotsapas C, Kostem E, Han B, Furlotte N, Kang EY, Rivas M, Bogue MA, Frazer KA, Johnson FM, Beilharz EJ, Cox DR, Eskin E, et al. Fine mapping in 94 inbred mouse strains using a high-density haplotype resource. Genetics. 185: 1081-95. PMID 20439770 DOI: 10.1534/Genetics.110.115014  0.8
2009 Han B, Kang HM, Eskin E. Rapid and accurate multiple testing correction and power estimation for millions of correlated markers. Plos Genetics. 5: e1000456. PMID 19381255 DOI: 10.1371/Journal.Pgen.1000456  0.8
2009 Kang HM, Zaitlen NA, Han B, Eskin E. An adaptive and memory efficient algorithm for genotype imputation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5541: 482-495. DOI: 10.1007/978-3-642-02008-7_34  0.8
2008 Han B, Kang HM, Seo MS, Zaitlen N, Eskin E. Efficient association study design via power-optimized tag SNP selection Annals of Human Genetics. 72: 834-847. PMID 18702637 DOI: 10.1111/J.1469-1809.2008.00469.X  0.8
2008 Han B, Dost B, Bafna V, Zhang S. Structural alignment of pseudoknotted RNA. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 15: 489-504. PMID 18549303 DOI: 10.1089/Cmb.2007.0214  0.8
2008 Choi A, Zaitlen N, Han B, Pipatsrisawat K, Darwiche A, Eskin E. Efficient genome wide tagging by reduction to SAT Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5251: 135-147. DOI: 10.1007/978-3-540-87361-7_12  0.8
Show low-probability matches.