Mary Q. Yang, Ph.D. - Publications

Affiliations: 
2005 Purdue University, West Lafayette, IN, United States 
Area:
General Biophysics, Artificial Intelligence

75 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Hu L, Zhang R, Yuan Q, Gao Y, Yang MQ, Zhang C, Huang J, Sun Y, Yang W, Yang JY, Min ZL, Cheng J, Deng Y, Hu X. The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25-35 triggered in SH-SY5Y cell. Bmc Systems Biology. 12: 119. PMID 30547775 DOI: 10.1186/S12918-018-0633-3  0.6
2015 Zhou H, Manthey J, Lioutikova E, Yang MQ, Yang W, Yoshigoe K, Wang H. The upregulation of Myb and Peg3 may mediate EGCG inhibition effect on mouse lung adenocarcinoma Proceedings - 2015 Ieee International Conference On Bioinformatics and Biomedicine, Bibm 2015. 1532-1535. DOI: 10.1109/BIBM.2015.7359903  0.36
2014 Liu C, Lu L, Kong Q, Li Y, Wu H, Yang W, Xu S, Yang X, Song X, Yang JY, Yang M, Deng Y. Developing discriminate model and comparative analysis of differentially expressed genes and pathways for bloodstream samples of diabetes mellitus type 2. Bmc Bioinformatics. 15: S5. PMID 25559614 DOI: 10.1186/1471-2105-15-S17-S5  0.6
2014 Chen Z, Yang W, Liu Q, Yang JY, Li J, Yang M. A new statistical approach to combining p-values using gamma distribution and its application to genome-wide association study. Bmc Bioinformatics. 15: S3. PMID 25559433 DOI: 10.1186/1471-2105-15-S17-S3  0.6
2014 Yang W, Yoshigoe K, Qin X, Liu JS, Yang JY, Niemierko A, Deng Y, Liu Y, Dunker A, Chen Z, Wang L, Xu D, Arabnia HR, Tong W, Yang M. Identification of genes and pathways involved in kidney renal clear cell carcinoma. Bmc Bioinformatics. 15: S2. PMID 25559354 DOI: 10.1186/1471-2105-15-S17-S2  0.6
2014 Yang JY, Dunker A, Liu JS, Qin X, Arabnia HR, Yang W, Niemierko A, Chen Z, Luo Z, Wang L, Liu Y, Xu D, Deng Y, Tong W, Yang M. Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. Bmc Bioinformatics. 15: I1. PMID 25559210 DOI: 10.1186/1471-2105-15-S17-I1  0.6
2014 Yang MQ, Zhao M, Guo F, Wang HW. Research of diameter measurement based on CCD image sensor Applied Mechanics and Materials. 602: 1984-1987. DOI: 10.4028/www.scientific.net/AMM.602-605.1984  0.32
2013 Zhao M, Zhao Y, Sha YF, Guo F, Yang MQ. Orientation system of best imaging location of aerial cameras based on CCD Advanced Materials Research. 710: 424-427. DOI: 10.4028/www.scientific.net/AMR.710.424  0.32
2013 Guo F, Zhao M, Zhou MY, Yang MQ, Cong SS. Apochromatic collimator objective lens design with big field of view Advanced Materials Research. 710: 413-418. DOI: 10.4028/www.scientific.net/AMR.710.413  0.32
2013 Wang HW, Yang MQ, Sun XR, Xie J. Digital earth and exploration of military application Applied Mechanics and Materials. 397: 2447-2450. DOI: 10.4028/www.scientific.net/AMM.397-400.2447  0.32
2013 Sha YF, Zhao M, Guo F, Yang MQ. A simple and rapid electrochemical method for determination of ascorbic acid Applied Mechanics and Materials. 341: 866-869. DOI: 10.4028/www.scientific.net/AMM.341-342.866  0.32
2012 Zhao M, Sha YF, Yang MQ, Guo F. Testing technique for focus surface message of aerial cameras 2012 International Conference On Systems and Informatics, Icsai 2012. 299-302. DOI: 10.1109/ICSAI.2012.6223620  0.32
2011 Yang MQ, Laflamme K, Gotea V, Joiner CH, Seidel NE, Wong C, Petrykowska HM, Lichtenberg J, Lee S, Welch L, Gallagher PG, Bodine DM, Elnitski L. Genome-wide detection of a TFIID localization element from an initial human disease mutation. Nucleic Acids Research. 39: 2175-87. PMID 21071415 DOI: 10.1093/Nar/Gkq1035  0.6
2010 Zhang X, Wang T, Luo H, Yang JY, Deng Y, Tang J, Yang MQ. 3D protein structure prediction with genetic tabu search algorithm. Bmc Systems Biology. 4: S6. PMID 20522256 DOI: 10.1186/1752-0509-4-S1-S6  0.6
2010 Wang L, Huang C, Yang MQ, Yang JY. BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features. Bmc Systems Biology. 4: S3. PMID 20522253 DOI: 10.1186/1752-0509-4-S1-S3  0.6
2010 Laflamme K, Owen AN, Devlin EE, Yang MQ, Wong C, Steiner LA, Garrett LJ, Elnitski L, Gallagher PG, Bodine DM. Functional analysis of a novel cis-acting regulatory region within the human ankyrin gene (ANK-1) promoter. Molecular and Cellular Biology. 30: 3493-502. PMID 20479128 DOI: 10.1128/Mcb.00119-10  0.6
2010 Li GZ, You M, Ge L, Yang JY, Yang MQ. Feature selection for semi-supervised multi-label learning with application to gene function analysis 2010 Acm International Conference On Bioinformatics and Computational Biology, Acm-Bcb 2010. 354-357. DOI: 10.1145/1854776.1854828  0.6
2009 Yang MQ, Yang JY. Lecture notes: 2010 and beyond, the decade of high-performance computing for the next-generation sequence analysis International Journal of Computational Biology and Drug Design. 2: 204-206. PMID 20090171 DOI: 10.1504/IJCBDD.2009.028824  0.6
2009 Yang MQ, Niemierko A, Yang JY, Jin Y. Promoting inter/multidisciplinary education and research in bioinformatics, systems biology and intelligent computing. International Journal of Computational Biology and Drug Design. 2: 207-20. PMID 20090160 DOI: 10.1504/Ijcbdd.2009.030113  0.6
2009 Liu Q, Sung AH, Qiao M, Chen Z, Yang JY, Yang MQ, Huang X, Deng Y. Comparison of feature selection and classification for MALDI-MS data. Bmc Genomics. 10: S3. PMID 19594880 DOI: 10.1186/1471-2164-10-S1-S3  0.6
2009 Yang MQ, Athey BD, Arabnia HR, Sung AH, Liu Q, Yang JY, Mao J, Deng Y. High-throughput next-generation sequencing technologies foster new cutting-edge computing techniques in bioinformatics Bmc Genomics. 10. PMID 19594867 DOI: 10.1186/1471-2164-10-S1-I1  0.6
2009 Piontkivska H, Yang MQ, Larkin DM, Lewin HA, Reecy J, Elnitski L. Cross-species mapping of bidirectional promoters enables prediction of unannotated 5' UTRs and identification of species-specific transcripts. Bmc Genomics. 10: 189. PMID 19393065 DOI: 10.1186/1471-2164-10-189  0.6
2009 Chen SF, Zeng XQ, Li GZ, Yang JY, Yang MQ. Redundant gene selection based on particle swarm optimization Proceedings - 2009 International Joint Conference On Bioinformatics, Systems Biology and Intelligent Computing, Ijcbs 2009. 10-16. DOI: 10.1109/IJCBS.2009.72  0.6
2009 Xiong K, Suh SC, Yang MQ, Yang JY, Arabnia HR. Next generation sequence analysis using genetic algorithms on multi-core technology Proceedings - 2009 International Joint Conference On Bioinformatics, Systems Biology and Intelligent Computing, Ijcbs 2009. 190-191. DOI: 10.1109/IJCBS.2009.104  0.6
2009 Li GZ, Meng HH, Yang MQ, Yang JY. Combining support vector regression with feature selection for multivariate calibration Neural Computing and Applications. 18: 813-820. DOI: 10.1007/s00521-008-0202-6  0.6
2009 You M, Li GZ, Yang JY, Yang MQ. An enhanced lipschitz embedding classifier for multi-emotion speech analysis International Journal of Pattern Recognition and Artificial Intelligence. 23: 1685-1700.  0.6
2008 Yang MQ, Elnitski LL. Diversity of core promoter elements comprising human bidirectional promoters Bmc Genomics. 9. PMID 18831794 DOI: 10.1186/1471-2164-9-S2-S3  0.6
2008 Li GZ, Bu HL, Yang MQ, Zeng XQ, Yang JY. Selecting subsets of newly extracted features from PCA and PLS in microarray data analysis Bmc Genomics. 9. PMID 18831790 DOI: 10.1186/1471-2164-9-S2-S24  0.6
2008 Pirooznia M, Gong P, Yang JY, Yang MQ, Perkins EJ, Deng Y. ILOOP--a web application for two-channel microarray interwoven loop design. Bmc Genomics. 9: S11. PMID 18831776 DOI: 10.1186/1471-2164-9-S2-S11  0.6
2008 Yang JY, Yang MQ, Arabnia HR, Deng Y. Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research Bmc Genomics. 9. PMID 18831773 DOI: 10.1186/1471-2164-9-S2-I1  0.6
2008 Yang JY, Yang MQ. Identification of intrinsically unstructured proteins using hierarchical classifier International Journal of Data Mining and Bioinformatics. 2: 121-133. PMID 18767350 DOI: 10.1504/IJDMB.2008.019093  0.6
2008 Yang MQ, Taylor J, Elnitski L. Comparative analyses of bidirectional promoters in vertebrates Bmc Bioinformatics. 9. PMID 18541062 DOI: 10.1186/1471-2105-9-S6-S9  0.6
2008 Zeng XQ, Li GZ, Yang JY, Yang MQ, Wu GF. Dimension reduction with redundant gene elimination for tumor classification Bmc Bioinformatics. 9. PMID 18541061 DOI: 10.1186/1471-2105-9-S6-S8  0.6
2008 Li GZ, Meng HH, Lu WC, Yang JY, Yang MQ. Asymmetric bagging and feature selection for activities prediction of drug molecules. Bmc Bioinformatics. 9: S7. PMID 18541060 DOI: 10.1186/1471-2105-9-S6-S7  0.6
2008 Yang JY, Yang MQ, Dunker AK, Deng Y, Huang X. Investigation of transmembrane proteins using a computational approach. Bmc Genomics. 9: S7. PMID 18366620 DOI: 10.1186/1471-2164-9-S1-S7  0.6
2008 Liu Q, Yang J, Chen Z, Yang MQ, Sung AH, Huang X. Supervised learning-based tagSNP selection for genome-wide disease classifications. Bmc Genomics. 9: S6. PMID 18366619 DOI: 10.1186/1471-2164-9-S1-S6  0.6
2008 Yang JY, Li GZ, Meng HH, Yang MQ, Deng Y. Improving prediction accuracy of tumor classification by reusing genes discarded during gene selection. Bmc Genomics. 9: S3. PMID 18366616 DOI: 10.1186/1471-2164-9-S1-S3  0.6
2008 Yang JY, Yang MQ, Luo Z, Ma Y, Li J, Deng Y, Huang X. A hybrid machine learning-based method for classifying the Cushing's Syndrome with comorbid adrenocortical lesions. Bmc Genomics. 9: S23. PMID 18366613 DOI: 10.1186/1471-2164-9-S1-S23  0.6
2008 Yang MQ, Elnitski LL. Prediction-based approaches to characterize bidirectional promoters in the mammalian genome Bmc Genomics. 9. PMID 18366609 DOI: 10.1186/1471-2164-9-S1-S2  0.6
2008 Land WH, Heine JJ, Raway T, Mizaku A, Kovalchuk N, Yang JY, Yang MQ. New statistical learning theory paradigms adapted to breast cancer diagnosis/classification using image and non-image clinical data International Journal of Functional Informatics and Personalised Medicine. 1: 111-139. DOI: 10.1504/IJFIPM.2008.020183  0.6
2008 Chen Y, Chen F, Yang JY, Yang MQ. Ensemble voting system for multiclass protein fold recognition International Journal of Pattern Recognition and Artificial Intelligence. 22: 747-763. DOI: 10.1142/S0218001408006454  0.6
2008 Emmert-Streib F, Arabnia HR, Yang MQ. Applied Artificial Intelligence: Preface Applied Artificial Intelligence. 22: 617-618. DOI: 10.1080/08839510802164051  0.6
2008 Zeng XQ, Li GZ, Yang JY, Yang MQ. A novel metric for redundant gene elimination based on discriminative contribution Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4983: 256-267. DOI: 10.1007/978-3-540-79450-9_24  0.6
2008 Yang MQ, King DC, Elnitski LL. Feature Characterization and Testing of Bidirectional Promoters in the Human Genome-Significance and Applications in Human Genome Research Machine Learning in Bioinformatics. 321-338. DOI: 10.1002/9780470397428.ch15  0.6
2008 Arabnia HR, Yang MQ, Yang JY. Proceedings of the 2008 International Conference on Bioinformatics and Computational Biology, BIOCOMP 2008: Foreword Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008 0.6
2008 Lichtenberg J, Jacox E, Yang MQ, Elnitski L, Welch L. Word-based characterization of the bidirectional promoters from the human DNA-repair pathways Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 29-33.  0.6
2008 Liu Y, Li GZ, Yu W, Xu J, Yang JY, Yang MQ. Abnormal traffic detection in VoIP by using machine learning approaches Proceedings of the 2008 International Conference On Artificial Intelligence, Icai 2008 and Proceedings of the 2008 International Conference On Machine Learning; Models, Technologies and Applications. 295-300.  0.6
2007 Yang MQ, Koehly LM, Elnitski LL. Comprehensive annotation of bidirectional promoters identifies co-regulation among breast and ovarian cancer genes. Plos Computational Biology. 3: e72. PMID 17447839 DOI: 10.1371/journal.pcbi.0030072  0.6
2007 Yang MQ, Taylor J, Elnitski L. Rigorous mapping of orthologous bidirectional promoters in vertebrates defines their evolutionary history Proceedings - 2nd International Multi-Symposiums On Computer and Computational Sciences, Imsccs'07. 115-122. DOI: 10.1109/IMSCCS.2007.4392588  0.6
2007 Li GZ, Meng HH, Yang MQ, Yang JY. Asymmetrie bagging and feature selection for activities prediction of drug molecules Proceedings - 2nd International Multi-Symposiums On Computer and Computational Sciences, Imsccs'07. 108-114. DOI: 10.1109/IMSCCS.2007.4392587  0.6
2007 Li GZ, Zeng XQ, Yang JY, Yang MQ. Partial least squares based dimension reduction with gene selection for tumor classification Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 1439-1444. DOI: 10.1109/BIBE.2007.4375763  0.6
2007 Bu HL, Li GZ, Zeng XQ, Yang JY, Yang MQ. Feature selection and partial least squares based dimension reduction for tumor classification Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 967-973. DOI: 10.1109/BIBE.2007.4375675  0.6
2007 Li GZ, Meng HH, Yang MQ, Yang JY. Support vector regression with feature selection for the multivariate calibration of spectrofluorimetric determination of aromatic amino acids Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 842-848. DOI: 10.1109/BIBE.2007.4375658  0.6
2007 Yang JY, Niemierko A, Yang MQ, Deng Y. Non-monotonic radio-sensitivity over tumor volumes on adjuvant radio therapy: A new insight on cell killing and modeling Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 524-531. DOI: 10.1109/BIBE.2007.4375611  0.6
2007 Pirooznia M, Rawat A, Yang JY, Yang MQ, Gong P, Perkins EJ, Deng Y. An effective interwoven loop design application for two-channel microarray experiments Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 187-191. DOI: 10.1109/BIBE.2007.4375563  0.6
2007 Chen Y, Zhang X, Yang MQ, Yang JY. Ensemble of probabilistic neural networks for protein fold recognition Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 66-70. DOI: 10.1109/BIBE.2007.4375546  0.6
2007 Yang MQ, Yang JY. An investigation into the feasibility of detecting microscopic disease using machine learning Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 9-10. DOI: 10.1109/BIBE.2007.4375535  0.6
2007 Yang MQ, Elnitski LL. IEEE 7th BIBE keynote: Promoter studies in the human genome: One perspective on an unfinished story Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 4-6. DOI: 10.1109/BIBE.2007.4375532  0.6
2007 Yang JY, Yang MQ, Bourbakis NG, Zhu MM, Zhang Y, Arabnia HR, Deng Y, Chen GTY. Message from the General, Program and Steering Committee chairs Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. DOI: 10.1109/BIBE.2007.4375524  0.6
2007 Yang MQ, Yang JY, Ersoy OK. Classification of proteins multiple-labelled and single-labelled with protein functional classes International Journal of General Systems. 36: 91-109. DOI: 10.1080/03081070600950868  0.6
2007 Yang MQ, Yang JY, Codrington CW. Identification of Transmembrane Proteins Using Variants of the Self-Organizing Feature Map Algorithm Knowledge Discovery in Bioinformatics: Techniques, Methods, and Applications. 267-293. DOI: 10.1002/9780470124642.ch14  0.6
2007 Li GZ, Li D, Lu WC, Yang MQ, Yang JY. Feature selection for co-training: A QSAR study Proceedings of the 2007 International Conference On Artificial Intelligence, Icai 2007. 1: 138-144.  0.6
2007 Yang MQ, Elnitski LL. Invited talk: A computational study of bidirectional promoters in the human genome Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4463: 361-371.  0.6
2007 Arabnia HR, Yang JY, Yang MQ. Foreword Proceedings of the 2007 International Conference On Artificial Intelligence, Icai 2007. 1.  0.6
2007 Yang JY, Yang MQ, Niemierko A, Luo Z, Li J. Predicting tumor malignancies using combined computational intelligence, bioinformatics and laboratory molecular biology approaches 2007 Ieee Symposium On Computational Intelligence and Bioinformatics and Computational Biology, Cibcb 2007. 46-53.  0.6
2006 Luo Z, Li J, Qin Y, Ma Y, Liang X, Xian J, Lu D, Wei M, Yang JY, Yang MQ, He Z. Differential expression of human telomerase catalytic subunit mRNA by in situ hybridization in pheochromocytomas Endocrine Pathology. 17: 387-398. PMID 17525487 DOI: 10.1007/s12022-006-0010-4  0.6
2006 Yang MQ, Yang JY. IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences Proceedings - Sixth Ieee Symposium On Bioinformatics and Bioengineering, Bibe 2006. 3-11. DOI: 10.1109/BIBE.2006.253309  0.6
2005 Yang MQ, Yang JY, Luo Z, Ersoy OK. Automated learning of genome sequences by computational intelligence 2005 Icsc Congress On Computational Intelligence Methods and Applications. 2005.  0.6
2005 Yang JY, Yang MQ, Luo Z, Ersoy O. Automated identifying intrinsic unstructured regions in proteins - A software tool 2005 Icsc Congress On Computational Intelligence Methods and Applications. 2005.  0.6
2005 Yang JY, Yang MQ, Ersoy OK. Data mining and knowledge discovery from membrane proteins 2005 Icsc Congress On Computational Intelligence Methods and Applications. 2005.  0.6
2005 Yang JY, Yang MQ, Ersoy O. Learning from genome sequences utilizing computational intelligence 2005 Icsc Congress On Computational Intelligence Methods and Applications. 2005.  0.6
2005 Yang MQ, Yang JY, Ersoy OK. Computational intelligence - A broad initiative in automated learning from sequences 2005 Icsc Congress On Computational Intelligence Methods and Applications. 2005.  0.6
2003 Yang JY, Yang MQ, Ersoy OK. Multiple-labeled instance classifier in functional genomics Intelligent Engineering Systems Through Artificial Neural Networks. 13: 3-13.  0.6
2003 Yang JY, Yang MQ, Ersoy OK. Exploring protein functional relationships using genomic information and data mining techniques Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2714: 1073-1080.  0.6
2002 Yang JY, Yang MQ, Ersoy OK. Gene finding and protein function determination using protein phylogenetic profiles and computational intelligence Intelligent Engineering Systems Through Artificial Neural Networks. 12: 735-740.  0.6
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