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Elham Azizi, Ph.D. - Publications

Affiliations: 
2014 Bioinformatics Boston University, Boston, MA, United States 
Area:
Bioinformatics Biology
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18 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Nazaret A, Fan JL, Lavallée VP, Cornish AE, Kiseliovas V, Masilionis I, Chun J, Bowman RL, Eisman SE, Wang J, Shi L, Levine RL, Mazutis L, Blei D, Pe'er D, ... Azizi E, et al. Deep generative model deciphers derailed trajectories in acute myeloid leukemia. Biorxiv : the Preprint Server For Biology. PMID 38014231 DOI: 10.1101/2023.11.11.566719  0.569
2023 Bachireddy P, Azizi E, Burdziak C, Nguyen VN, Ennis CS, Maurer K, Park CY, Choo ZN, Li S, Gohil SH, Ruthen NG, Ge Z, Keskin DB, Cieri N, Livak KJ, et al. Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy. Cell Reports. 42: 113011. PMID 37556329 DOI: 10.1016/j.celrep.2023.113011  0.527
2021 Bachireddy P, Azizi E, Burdziak C, Nguyen VN, Ennis CS, Maurer K, Park CY, Choo ZN, Li S, Gohil SH, Ruthen NG, Ge Z, Keskin DB, Cieri N, Livak KJ, et al. Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy. Cell Reports. 37: 109992. PMID 34758319 DOI: 10.1016/j.celrep.2021.109992  0.568
2021 Alonso-Curbelo D, Ho YJ, Burdziak C, Maag JLV, Morris JP, Chandwani R, Chen HA, Tsanov KM, Barriga FM, Luan W, Tasdemir N, Livshits G, Azizi E, Chun J, Wilkinson JE, et al. A gene-environment-induced epigenetic program initiates tumorigenesis. Nature. PMID 33536616 DOI: 10.1038/s41586-020-03147-x  0.519
2020 Price JC, Azizi E, Naiche LA, Parvani JG, Shukla P, Kim S, Slack-Davis JK, Pe'er D, Kitajewski JK. Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model. Plos One. 15: e0233962. PMID 32525899 DOI: 10.1371/Journal.Pone.0233962  0.584
2019 Viny AD, Bowman RL, Liu Y, Lavallée VP, Eisman SE, Xiao W, Durham BH, Navitski A, Park J, Braunstein S, Alija B, Karzai A, Csete IS, Witkin M, Azizi E, et al. Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation. Cell Stem Cell. PMID 31495782 DOI: 10.1016/J.Stem.2019.08.003  0.601
2019 Hemmers S, Schizas M, Azizi E, Dikiy S, Zhong Y, Feng Y, Altan-Bonnet G, Rudensky AY. IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus. The Journal of Experimental Medicine. PMID 31434685 DOI: 10.1084/Jem.20190993  0.318
2019 Viny AD, Bowman RL, Liu Y, Lavallee V, Eisman S, Xiao W, Durham BH, Navitski A, Park J, Braunstein S, Alija B, Karzai A, Csete IS, Witkin M, Azizi E, et al. Stag2 Regulates Hematopoietic Differentiation and Self-Renewal through Alterations in Gene Expression and Topological Control Blood. 134: 279-279. DOI: 10.1182/Blood-2019-123464  0.631
2019 Azizi E, Bachireddy P, Nguyen VN, Li S, Neuberg DS, Soiffer RJ, Ritz J, Alyea EP, Pe'er D, Wu CJ. Abstract 3371: Mapping the evolution of T cell states during DLI response and resistance using single-cell data and computational tools Cancer Research. DOI: 10.1158/1538-7445.Sabcs18-3371  0.585
2019 Bachireddy P, Azizi E, Nguyen VN, Li S, Neuberg D, Soiffer RJ, Ritz J, Alyea EP, Pe'er D, Wu C. Single Cell T Cell Maps of Donor Lymphocyte Infusion (DLI) Response and Resistance Biology of Blood and Marrow Transplantation. 25: S48. DOI: 10.1016/J.Bbmt.2018.12.125  0.611
2018 Azizi E, Carr AJ, Plitas G, Cornish AE, Konopacki C, Prabhakaran S, Nainys J, Wu K, Kiseliovas V, Setty M, Choi K, Fromme RM, Dao P, McKenney PT, Wasti RC, et al. Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment. Cell. PMID 29961579 DOI: 10.1016/J.Cell.2018.05.060  0.598
2018 Bachireddy P, Azizi E, Nguyen VN, Li S, Neuberg DS, Soiffer RJ, Ritz J, Alyea EP, Pe'er D, Wu CJ. Mapping the Evolution of T Cell Transcriptional States during DLI Response and Resistance Using Single-Cell Data Blood. 132: 821-821. DOI: 10.1182/Blood-2018-99-119040  0.614
2018 Lavallee V, Azizi E, Kiseliovas V, Masilionis I, Mazutis L, Levine RL, Pe'er D. Comprehensive Single-Cell RNA-Sequencing Mapping of Primary Acute Myeloid Leukemias and Profiling of NPM1-Mutated Cells Blood. 132: 995-995. DOI: 10.1182/Blood-2018-99-111390  0.594
2016 Prabhakaran S, Azizi E, Carr A, Pe'er D. Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data. Jmlr Workshop and Conference Proceedings. 48: 1070-1079. PMID 29928470  0.576
2016 Dekhang R, Wu C, Smith KM, Lamb TM, Peterson M, Bredeweg EL, Ibarra O, Emerson JM, Karunarathna N, Lyubetskaya A, Azizi E, Hurely JM, Dunlap JC, Galagan JE, Freitag M, et al. The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell-Fusion. G3 (Bethesda, Md.). PMID 27856696 DOI: 10.1534/G3.116.034298  0.726
2014 Gomes AL, Abeel T, Peterson M, Azizi E, Lyubetskaya A, Carvalho L, Galagan J. Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction. Genome Research. 24: 1686-97. PMID 25024162 DOI: 10.1101/Gr.161711.113  0.681
2014 Azizi E, Airoldi EM, Galagan JE. Learning modular structures from network data and node variables 31st International Conference On Machine Learning, Icml 2014. 4: 3300-3308.  0.661
2013 Galagan JE, Minch K, Peterson M, Lyubetskaya A, Azizi E, Sweet L, Gomes A, Rustad T, Dolganov G, Glotova I, Abeel T, Mahwinney C, Kennedy AD, Allard R, Brabant W, et al. The Mycobacterium tuberculosis regulatory network and hypoxia. Nature. 499: 178-83. PMID 23823726 DOI: 10.1038/Nature12337  0.59
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