☰

Carlos A. Castaneda, Ph.D. - Publications

Affiliations: 
2009 Johns Hopkins University, Baltimore, MD 
Area:
General Biophysics, Biochemistry
Tree Info Similar researchers PubMed Report error

33 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zheng T, Yang Y, Castañeda CA. Structure, dynamics and functions of UBQLNs: at the crossroads of protein quality control machinery. The Biochemical Journal. 477: 3471-3497. PMID 32965492 DOI: 10.1042/BCJ20190497  0.33
2020 Dao TP, Castañeda CA. Ubiquitin-Modulated Phase Separation of Shuttle Proteins: Does Condensate Formation Promote Protein Degradation? Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. e2000036. PMID 32881044 DOI: 10.1002/Bies.202000036  0.464
2020 Zheng T, Namitz K, Canning A, Alicea-Velazquez N, Castaneda CA, Cosgrove MS, Hanes SD. Solution Structure Studies of Ess1 Interactions with the RNAPII CTD Suggest a Dual Binding Mechanism that Differs from that of Human Pin1 Biophysical Journal. 118: 531a. DOI: 10.1016/J.Bpj.2019.11.2913  0.316
2018 Dao TP, Kolaitis RM, Kim HJ, O'Donovan K, Martyniak B, Colicino E, Hehnly H, Taylor JP, Castañeda CA. Ubiquitin Modulates Liquid-Liquid Phase Separation of UBQLN2 via Disruption of Multivalent Interactions. Molecular Cell. PMID 29526694 DOI: 10.1016/J.Molcel.2018.02.004  0.343
2018 Castaneda C. Chemical shifts of UBQLN2 residues 450-624 Journal of Back and Musculoskeletal Rehabilitation. DOI: 10.13018/Bmr27339  0.317
2017 Nakasone MA, Lewis TA, Walker O, Thakur A, Mansour W, Castañeda CA, Goeckeler-Fried JL, Parlati F, Chou TF, Hayat O, Zhang D, Camara CM, Bonn SM, Nowicka UK, Krueger S, et al. Structural Basis for the Inhibitory Effects of Ubistatins in the Ubiquitin-Proteasome Pathway. Structure (London, England : 1993). PMID 29153505 DOI: 10.1016/J.Str.2017.10.007  0.37
2017 Hiebler K, Lengyel Z, Castañeda CA, Makhlynets OV. Functional Tuning of the catalytic residue pKa in a de novo Designed Esterase. Proteins. PMID 28544090 DOI: 10.1002/Prot.25321  0.445
2016 Castañeda CA, Dixon EK, Walker O, Chaturvedi A, Nakasone MA, Curtis JE, Reed MR, Krueger S, Cropp TA, Fushman D. Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins. Structure (London, England : 1993). PMID 26876099 DOI: 10.1016/J.Str.2016.01.007  0.303
2015 Ha JH, Karchin JM, Walker-Kopp N, Castañeda CA, Loh SN. Engineered Domain Swapping as an On/Off Switch for Protein Function. Chemistry & Biology. 22: 1384-93. PMID 26496687 DOI: 10.1016/J.Chembiol.2015.09.007  0.407
2015 Castañeda CA, Chaturvedi A, Camara CM, Curtis JE, Krueger S, Fushman D. Linkage-specific conformational ensembles of non-canonical polyubiquitin chains. Physical Chemistry Chemical Physics : Pccp. PMID 26422168 DOI: 10.1039/C5Cp04601G  0.333
2015 Burke MC, Wang Y, Lee AE, Dixon EK, Castaneda CA, Fushman D, Fenselau C. Unexpected trypsin cleavage at ubiquitinated lysines. Analytical Chemistry. PMID 26182167 DOI: 10.1021/Acs.Analchem.5B01960  0.322
2015 Nowicka U, Zhang D, Walker O, Krutauz D, Castañeda CA, Chaturvedi A, Chen TY, Reis N, Glickman MH, Fushman D. DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin. Structure (London, England : 1993). 23: 542-57. PMID 25703377 DOI: 10.1016/J.Str.2015.01.010  0.427
2014 Lee AE, Castañeda CA, Wang Y, Fushman D, Fenselau C. Preparing to read the ubiquitin code: a middle-out strategy for characterization of all lysine-linked diubiquitins. Journal of Mass Spectrometry : Jms. 49: 1272-8. PMID 25476945 DOI: 10.1002/Jms.3458  0.349
2014 Lee SY, Pullen L, Virgil DJ, Castañeda CA, Abeykoon D, Bolon DNA, Fushman D. Alanine scan of core positions in ubiquitin reveals links between dynamics, stability, and function Journal of Molecular Biology. 426: 1377-1389. PMID 24361330 DOI: 10.1016/J.Jmb.2013.10.042  0.44
2013 Berlin K, Castañeda CA, Schneidman-Duhovny D, Sali A, Nava-Tudela A, Fushman D. Recovering a representative conformational ensemble from underdetermined macromolecular structural data. Journal of the American Chemical Society. 135: 16595-609. PMID 24093873 DOI: 10.1021/Ja4083717  0.387
2013 Haj-Yahya N, Haj-Yahya M, Castañeda CA, Spasser L, Hemantha HP, Jbara M, Penner M, Ciechanover A, Fushman D, Brik A. Modifying the vicinity of the isopeptide bond to reveal differential behavior of ubiquitin chains with interacting proteins: organic chemistry applied to synthetic proteins. Angewandte Chemie (International Ed. in English). 52: 11149-53. PMID 24006204 DOI: 10.1002/Anie.201306118  0.456
2013 Castañeda CA, Kashyap TR, Nakasone MA, Krueger S, Fushman D. Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains. Structure (London, England : 1993). 21: 1168-81. PMID 23823328 DOI: 10.1016/J.Str.2013.04.029  0.327
2013 Dixon EK, Castañeda CA, Kashyap TR, Wang Y, Fushman D. Nonenzymatic assembly of branched polyubiquitin chains for structural and biochemical studies. Bioorganic & Medicinal Chemistry. 21: 3421-9. PMID 23557636 DOI: 10.1016/J.Bmc.2013.02.052  0.38
2013 Castaneda CA, Dixon E, Chaturvedi A, Krueger S, Cropp TA, Fushman D. Effect of Different Lysine Linkages on Polyubiquitin Chain Structure and Function Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.133  0.325
2012 Lange A, Castañeda C, Hoeller D, Lancelin JM, Fushman D, Walker O. Evidence for cooperative and domain-specific binding of the signal transducing adaptor molecule 2 (STAM2) to Lys63-linked diubiquitin. The Journal of Biological Chemistry. 287: 18687-99. PMID 22493438 DOI: 10.1074/Jbc.M111.324954  0.343
2011 Castañeda C, Liu J, Chaturvedi A, Nowicka U, Cropp TA, Fushman D. Nonenzymatic assembly of natural polyubiquitin chains of any linkage composition and isotopic labeling scheme. Journal of the American Chemical Society. 133: 17855-68. PMID 21962295 DOI: 10.1021/Ja207220G  0.372
2011 Castañeda CA, Spasser L, Bavikar SN, Brik A, Fushman D. Segmental isotopic labeling of ubiquitin chains to unravel monomer-specific molecular behavior. Angewandte Chemie (International Ed. in English). 50: 11210-4. PMID 21957015 DOI: 10.1002/Anie.201104649  0.395
2011 Isom DG, Castañeda CA, Cannon BR, García-Moreno B. Large shifts in pKa values of lysine residues buried inside a protein. Proceedings of the National Academy of Sciences of the United States of America. 108: 5260-5. PMID 21389271 DOI: 10.1073/Pnas.1010750108  0.734
2011 Castañeda CA, Liu J, Kashyap TR, Singh RK, Fushman D, Cropp TA. Controlled enzymatic synthesis of natural-linkage, defined-length polyubiquitin chains using lysines with removable protecting groups. Chemical Communications (Cambridge, England). 47: 2026-8. PMID 21212884 DOI: 10.1039/C0Cc04868B  0.364
2011 Chimenti MS, Castañeda CA, Majumdar A, García-Moreno E B. Structural origins of high apparent dielectric constants experienced by ionizable groups in the hydrophobic core of a protein. Journal of Molecular Biology. 405: 361-77. PMID 21059359 DOI: 10.1016/J.Jmb.2010.10.001  0.576
2011 Doctrow BM, Castañeda CA, Fitch C, Majumdar A, Schlessman JL, Cieplak M, García-Moreno B. Cooperativity in a Cluster of Carboxylic Groups in the Active Site of a Protein Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.502  0.722
2011 Khangulov V, Castaneda CA, Chimenti MS, Harms MJ, Isom DG, Schlessman JL, Garcia-Moreno BE. Strong Coulomb Interactions Between Internal and Surface Charges in Proteins Biophysical Journal. 100: 218a. DOI: 10.1016/J.Bpj.2010.12.1404  0.763
2011 Robinson A, Castaneda C, Schlessman J, Garcia-Moreno B. Ion Pairs in the Hydrophobic Interior of a Protein: How Do Proteins Dissolve Salt in Oil? Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1376  0.766
2010 Liu J, Castañeda CA, Wilkins BJ, Fushman D, Cropp TA. Condensed E. coli cultures for highly efficient production of proteins containing unnatural amino acids. Bioorganic & Medicinal Chemistry Letters. 20: 5613-6. PMID 20805030 DOI: 10.1016/J.Bmcl.2010.08.049  0.332
2009 Castañeda CA, Fitch CA, Majumdar A, Khangulov V, Schlessman JL, García-Moreno BE. Molecular determinants of the pKa values of Asp and Glu residues in staphylococcal nuclease. Proteins. 77: 570-88. PMID 19533744 DOI: 10.1002/Prot.22470  0.752
2009 Harms MJ, Castañeda CA, Schlessman JL, Sue GR, Isom DG, Cannon BR, García-Moreno E B. The pK(a) values of acidic and basic residues buried at the same internal location in a protein are governed by different factors. Journal of Molecular Biology. 389: 34-47. PMID 19324049 DOI: 10.1016/J.Jmb.2009.03.039  0.768
2008 Isom DG, Cannon BR, Castañeda CA, Robinson A, García-Moreno B. High tolerance for ionizable residues in the hydrophobic interior of proteins. Proceedings of the National Academy of Sciences of the United States of America. 105: 17784-8. PMID 19004768 DOI: 10.1073/Pnas.0805113105  0.729
2008 Takayama Y, Castañeda CA, Chimenti M, García-Moreno B, Iwahara J. Direct evidence for deprotonation of a lysine side chain buried in the hydrophobic core of a protein. Journal of the American Chemical Society. 130: 6714-5. PMID 18454523 DOI: 10.1021/Ja801731G  0.713
Show low-probability matches.