Yong Duan - Publications

Affiliations: 
Applied Science Engineering University of California, Davis, Davis, CA 
Area:
General Biophysics, Computer Science, Biochemistry

142 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 He C, Zhang Y, Duan Y, Yu J, Luo B, Jiang N, Liang Y, Zeng J, Zheng X, Xian Y. [Identification of differentially expressed genes and pathways changing in neutrophils of patients with sepsis by bioinformatics analysis]. Xi Bao Yu Fen Zi Mian Yi Xue Za Zhi = Chinese Journal of Cellular and Molecular Immunology. 35: 481-490. PMID 31292051  0.48
2019 Huang B, Duan Y. [Clinical Research Progress of Immune Checkpoint Inhibitors in the Treatment of 
Small Cell Lung Cancer]. Zhongguo Fei Ai Za Zhi = Chinese Journal of Lung Cancer. 22: 239-244. PMID 31014443 DOI: 10.3779/j.issn.1009-3419.2019.04.07  0.36
2019 Li Y, He C, He Z, Zhong M, Liu D, Liu R, Fan R, Duan Y. AIDS prevention and control in the Yunnan region by T cell subset assessment. Plos One. 14: e0214800. PMID 30998710 DOI: 10.1371/journal.pone.0214800  0.4
2019 Li Y, Li H, Duan Y, Cai X, You D, Zhou F, Yang C, Tuo X, Liu Z. Blockage of TGF- Induced by Spherical Silica Nanoparticles Inhibits Epithelial-Mesenchymal Transition and Proliferation of Human Lung Epithelial Cells. Biomed Research International. 2019: 8231267. PMID 30906781 DOI: 10.1155/2019/8231267  0.4
2019 Wang J, Cieplak P, Luo R, Duan Y. Development of Polarizable Gaussian Model for Molecular Mechanical Calculations I: Atomic Polarizability Parameterization to Reproduce Ab Initio Anisotropy. Journal of Chemical Theory and Computation. PMID 30645118 DOI: 10.1021/acs.jctc.8b00603  0.48
2019 Chen C, Hu X, Zheng Q, Duan Y, Liu S, Tao S. [Application of composite tissue flaps pedicled with distal perforating branch of posterior tibial artery for repairing distal leg defects]. Zhongguo Xiu Fu Chong Jian Wai Ke Za Zhi = Zhongguo Xiufu Chongjian Waike Zazhi = Chinese Journal of Reparative and Reconstructive Surgery. 33: 75-79. PMID 30644265 DOI: 10.7507/1002-1892.201805093  0.4
2018 Wang J, Duan Y, Meng QH, Gong R, Guo C, Zhao Y, Zhang Y. Integrated analysis of DNA methylation profiling and gene expression profiling identifies novel markers in lung cancer in Xuanwei, China. Plos One. 13: e0203155. PMID 30286088 DOI: 10.1371/journal.pone.0203155  0.48
2018 Wu C, Song G, Xiong G, Lu L, Zhou X, Duan Y. Genome-Wide Analysis of mRNA Expression Profiling Identified Lung Cancer-Related Gene in Xuanwei, China. Clinical Laboratory. 64: 1517-1526. PMID 30274024  0.56
2018 Ju CY, Zhang MJ, Ma YP, Lu JR, Yu MH, Chen H, Liu CY, Gu YX, Fu YY, Duan YX. Genetic and Antibiotic Resistance Characteristics of Campylobacter jejuni Isolated from Diarrheal Patients, Poultry and Cattle in Shenzhen. Biomedical and Environmental Sciences : Bes. 31: 579-585. PMID 30231962 DOI: 10.3967/bes2018.079  0.44
2018 Man B, Wang H, Yun Y, Xiang X, Wang R, Duan Y, Cheng X. Diversity of Fungal Communities in Heshang Cave of Central China Revealed by Mycobiome-Sequencing. Frontiers in Microbiology. 9: 1400. PMID 30061866 DOI: 10.3389/fmicb.2018.01400  0.36
2018 Deng X, Yang Y, Sun H, Qi W, Duan Y, Qian Y. Analysis of whole genome-wide methylation and gene expression profiles in visceral omental adipose tissue of pregnancies with gestational diabetes mellitus. Journal of the Chinese Medical Association : Jcma. PMID 29685721 DOI: 10.1016/j.jcma.2017.06.027  0.4
2018 Shih TC, Liu R, Wu CT, Li X, Xiao W, Deng X, Kiss Z, Wang T, Chen X, Carney RP, Kung HJ, Duan Y, Ghosh PM, Lam KS. Targeting Galectin-1 impairs castration-resistant prostate cancer progression and invasion. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 29666302 DOI: 10.1158/1078-0432.CCR-18-0157  0.52
2018 Ruan J, Zhang T, Li F, Duan Y, Han M, Wang Z. [Surgical Treatment of Bronchial Stricture due to Endobronchial Tuberculosis: 
Results in 36 Consecutive Cases]. Zhongguo Fei Ai Za Zhi = Chinese Journal of Lung Cancer. 21: 320-322. PMID 29587916 DOI: 10.3779/j.issn.1009-3419.2018.04.19  0.52
2017 Wang T, Liu H, Duan Y. Assessment of the transmembrane domain structures in GPCR Dock 2013 models. Journal of Structural Biology. PMID 29174398 DOI: 10.1016/j.jsb.2017.11.007  0.96
2017 Du N, Liu S, Niu M, Duan Y, Zhang S, Yao J, Mao J, Chen R, Du Y. Transmission and characterization of bla NDM-1 in Enterobacter cloacae at a teaching hospital in Yunnan, China. Annals of Clinical Microbiology and Antimicrobials. 16: 58. PMID 28830556 DOI: 10.1186/s12941-017-0232-y  0.4
2017 Li Z, Li SA, Sun Y, Liu Y, Li WL, Yang L, Duan Y, Li J, Guo H, Zou TN, Li Y, Wang KH. TNF-α -308 A allele is associated with an increased risk of distant metastasis in rectal cancer patients from Southwestern China. Plos One. 12: e0178218. PMID 28575042 DOI: 10.1371/journal.pone.0178218  0.4
2017 Wang T, Wang Y, Tang L, Duan Y, Liu H. 7x7 RMSD Matrix: A New Method for Quantitative Comparison of the Transmembrane Domain Structures in the G-protein Coupled Receptors. Journal of Structural Biology. PMID 28223044 DOI: 10.1016/j.jsb.2017.02.005  0.96
2017 Chen R, Li WX, Sun Y, Duan Y, Li Q, Zhang AX, Hu JL, Wang YM, Gao YD. Comprehensive Analysis of lncRNA and mRNA Expression Profiles in Lung Cancer. Clinical Laboratory. 63: 313-320. PMID 28182363  0.4
2017 Wang X, Li J, Duan Y, Wu H, Xu Q, Zhang Y. Whole genome sequencing analysis of lung adenocarcinoma in Xuanwei, China. Thoracic Cancer. PMID 28083984 DOI: 10.1111/1759-7714.12411  0.48
2017 Li X, Peng W, Jiang Y, Duan Y, Ren J, Liu Y, Fan W. The Daphnia magna role to predict the cadmium toxicity of sediment: Bioaccumlation and biomarker response. Ecotoxicology and Environmental Safety. 138: 206-214. PMID 28061414 DOI: 10.1016/j.ecoenv.2017.01.002  0.4
2017 Zhang Y, Xue Q, Pan G, Meng QH, Tuo X, Cai X, Chen Z, Li Y, Huang T, Duan X, Duan Y. Integrated Analysis of Genome-Wide Copy Number Alterations and Gene Expression Profiling of Lung Cancer in Xuanwei, China. Plos One. 12: e0169098. PMID 28056099 DOI: 10.1371/journal.pone.0169098  0.48
2016 Song G, Zhou Y, Chen R, Li Q, Shan B, Duan Y, Wang Y. Expression and Function Analysis of MicroRNA-29b in Xuanwei Lung Cancer. Clinical Laboratory. 62: 1739-1745. PMID 28164574  0.52
2016 Yun Y, Wang H, Man B, Xiang X, Zhou J, Qiu X, Duan Y, Engel AS. The Relationship between pH and Bacterial Communities in a Single Karst Ecosystem and Its Implication for Soil Acidification. Frontiers in Microbiology. 7: 1955. PMID 28018299 DOI: 10.3389/fmicb.2016.01955  0.36
2016 Yang Z, Wang Z, Duan Y, Xu S. Clinicopathological characteristics and prognosis of resected cases of carcinoid tumors of the lung. Thoracic Cancer. PMID 27755793 DOI: 10.1111/1759-7714.12377  0.52
2016 Ruan J, Duan Y, Li F, Wang Z. Enhanced synergistic anti-Lewis lung carcinoma effect of a DNA vaccine harboring a MUC1-VEGFR2 fusion gene used with GM-CSF as an adjuvant. Clinical and Experimental Pharmacology & Physiology. PMID 27562635 DOI: 10.1111/1440-1681.12654  0.52
2016 Liu H, Pei J, He Y, Lan X, Sun R, Deng T, Xu Y, Zhu G, Wang W, Duan Y, Ma H, Wang S, Fan J, Li C. Comparison of functional change in parotid gland after surgical excision of pleomorphic adenoma by two different types of parotidectomy. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology. PMID 27492567 DOI: 10.1016/j.oooo.2016.03.023  0.32
2016 Duan Y, Yang Y, Wang Y, Liu H, Hong Y, Gong Q, Song Y. Comparison of anterior cervical discectomy and fusion with the zero-profile device versus plate and cage in treating cervical degenerative disc disease: A meta-analysis. Journal of Clinical Neuroscience : Official Journal of the Neurosurgical Society of Australasia. PMID 27443497 DOI: 10.1016/j.jocn.2016.01.046  0.96
2016 Duan Y, Liu L, Han G, Liu H, Yu W, Yang G, Wang H, Wang H, Liu Y, Zahid, Waheed H. Anomalous behaviors of Wyrtki Jets in the equatorial Indian Ocean during 2013. Scientific Reports. 6: 29688. PMID 27436723 DOI: 10.1038/srep29688  0.32
2016 Duan Y, Qin L, Liu H. Different evolutionary pathways from B4 to B1 phase in AlN and InN: metadynamics investigations. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 28: 205403. PMID 27120439 DOI: 10.1088/0953-8984/28/20/205403  0.48
2016 Zheng YC, Wang LZ, Zhao LJ, Zhao LJ, Zhan QN, Ma JL, Zhang B, Wang MM, Wang ZR, Li JF, Liu Y, Chen ZS, Shen DD, Liu XQ, Ren M, ... ... Duan YC, et al. 1,2,3-Triazole-Dithiocarbamate Hybrids, a Group of Novel Cell Active SIRT1 Inhibitors. Cellular Physiology and Biochemistry : International Journal of Experimental Cellular Physiology, Biochemistry, and Pharmacology. 38: 185-193. PMID 26784898 DOI: 10.1159/000438620  0.52
2015 Shang H, Cui W, Zhang M, Yang H, Sun Z, Duan Y, Chen M, Yuan H, Guan M, Zhang S, Jia M. [Training evaluation of clinical laboratory excellence for technologists from some county and township hospitals in 31 provinces of China]. Zhonghua Yi Xue Za Zhi. 95: 2943-6. PMID 26814071  0.4
2015 Wu H, Meng S, Xu Q, Wang X, Wang J, Gong R, Song Y, Duan Y, Zhang Y. Gene expression profiling of lung adenocarcinoma in Xuanwei, China. European Journal of Cancer Prevention : the Official Journal of the European Cancer Prevention Organisation (Ecp). PMID 26695082 DOI: 10.1097/CEJ.0000000000000214  0.48
2015 Zhang Y, Xu Q, Cai X, Li Y, Song G, Wang J, Zhang R, Dai Y, Duan Y. [Analysis of genomic copy number variations in two sisters with primary amenorrhea and hyperandrogenism]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 32: 814-818. PMID 26663055 DOI: 10.3760/cma.j.issn.1003-9406.2015.06.013  0.48
2015 Li Q, Wu C, Song G, Zhang H, Shan B, Duan Y, Wang Y. Genome-Wide Analysis of Long Noncoding RNA Expression Profiles in Human Xuanwei Lung Cancer. Clin Lab. 61: 1515-23. PMID 26642714 DOI: 10.7754/Clin.Lab.2015.150323  0.56
2015 Fa Y, Liang W, Cui H, Duan Y, Yang M, Gao J, Liu H. Capillary ion chromatography-mass spectrometry for simultaneous determination of glucosylglycerol and sucrose in intracellular extracts of cyanobacteria. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1001: 169-73. PMID 26279008 DOI: 10.1016/j.jchromb.2015.07.054  0.96
2015 Zhang J, Duan Y, Jin Z, Wei Y, Yang S, Luo J, Ma D, Jing L, Liu H. Stent boost subtract imaging for the assessment of optimal stent deployment in coronary ostial lesion intervention: comparison with intravascular ultrasound. International Heart Journal. 56: 37-42. PMID 25742941 DOI: 10.1536/ihj.14-169  0.96
2015 Duan Y, Li F, Tan K, Liu H, Li Y, Liu Y, Kong X, Tang Y, Wu G, Yin Y. Key mediators of intracellular amino acids signaling to mTORC1 activation. Amino Acids. 47: 857-67. PMID 25701492 DOI: 10.1007/s00726-015-1937-x  0.96
2015 Yu M, Liu H, Duan Y, Zhang D, Li S, Wang F. Four types of fatty acids exert differential impact on pancreatic cancer growth. Cancer Letters. 360: 187-94. PMID 25676690 DOI: 10.1016/j.canlet.2015.02.002  0.96
2015 Duan Y, Li F, Liu H, Li Y, Liu Y, Kong X, Zhang Y, Deng D, Tang Y, Feng Z, Wu G, Yin Y. Nutritional and regulatory roles of leucine in muscle growth and fat reduction. Frontiers in Bioscience (Landmark Edition). 20: 796-813. PMID 25553480 DOI: 10.2741/4338  0.96
2014 Zhang Y, Liu Y, Li Y, Duan Y, Zhang K, Wang J, Dai Y. Exome sequencing identifies mutations in ABCD1 and DACH2 in two brothers with a distinct phenotype. Bmc Medical Genetics. 15: 105. PMID 25234129 DOI: 10.1186/s12881-014-0105-6  0.48
2014 Sun J, Song F, Wang J, Han G, Bai Z, Xie B, Feng X, Jia J, Duan Y, Lei H. Hidden risk genes with high-order intragenic epistasis in Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 41: 1039-56. PMID 24762948 DOI: 10.3233/JAD-140054  0.56
2014 Gong Z, Zhao Y, Chen C, Duan Y, Xiao Y. Insights into ligand binding to PreQ1 Riboswitch Aptamer from molecular dynamics simulations. Plos One. 9: e92247. PMID 24663240 DOI: 10.1371/journal.pone.0092247  0.48
2014 Feng X, Bai Z, Wang J, Xie B, Sun J, Han G, Song F, Crack PJ, Duan Y, Lei H. Robust gene dysregulation in Alzheimer's disease brains. Journal of Alzheimer's Disease : Jad. 41: 587-97. PMID 24662101 DOI: 10.3233/JAD-140147  0.56
2014 Wang T, Oppawsky C, Duan Y, Tittor J, Oesterhelt D, Facciotti MT. Stable closure of the cytoplasmic half-channel is required for efficient proton transport at physiological membrane potentials in the bacteriorhodopsin catalytic cycle. Biochemistry. 53: 2380-90. PMID 24660845 DOI: 10.1021/bi4013808  0.52
2014 Lei H, Sun J, Baldwin EP, Segal DJ, Duan Y. Conformational elasticity can facilitate TALE-DNA recognition. Advances in Protein Chemistry and Structural Biology. 94: 347-64. PMID 24629191 DOI: 10.1016/B978-0-12-800168-4.00009-3  0.56
2014 Wang J, Feng X, Bai Z, Jin LW, Duan Y, Lei H. Chromosome 19p in Alzheimer's disease: when genome meets transcriptome. Journal of Alzheimer's Disease : Jad. 38: 245-50. PMID 23963291 DOI: 10.3233/JAD-130917  0.56
2013 Xie B, Wang D, Duan Y, Yu J, Lei H. Functional networking of human divergently paired genes (DPGs). Plos One. 8: e78896. PMID 24205343 DOI: 10.1371/journal.pone.0078896  0.56
2013 Zheng YC, Duan YC, Ma JL, Xu RM, Zi X, Lv WL, Wang MM, Ye XW, Zhu S, Mobley D, Zhu YY, Wang JW, Li JF, Wang ZR, Zhao W, et al. Triazole-dithiocarbamate based selective lysine specific demethylase 1 (LSD1) inactivators inhibit gastric cancer cell growth, invasion, and migration. Journal of Medicinal Chemistry. 56: 8543-60. PMID 24131029 DOI: 10.1021/jm401002r  0.52
2013 Huang Y, Bu N, Duan Y, Pan Y, Liu H, Yin Z, Xiong Y. Electrohydrodynamic direct-writing. Nanoscale. 5: 12007-17. PMID 24057297 DOI: 10.1039/c3nr04329k  0.96
2013 Wang T, Facciotti MT, Duan Y. Schiff base switch II precedes the retinal thermal isomerization in the photocycle of bacteriorhodopsin. Plos One. 8: e69882. PMID 23922839 DOI: 10.1371/journal.pone.0069882  0.52
2013 Sun J, Pan Y, Feng X, Zhang H, Duan Y, Lei H. iBIG: an integrative network tool for supporting human disease mechanism studies. Genomics, Proteomics & Bioinformatics. 11: 166-71. PMID 23809576 DOI: 10.1016/j.gpb.2012.08.007  0.56
2013 Liu GZ, Xu HW, Wang P, Lin ZT, Duan YC, Zheng JX, Liu HM. Stereoselective synthesis and anti-proliferative effects on prostate cancer evaluation of 5-substituted-3,4-diphenylfuran-2-ones. European Journal of Medicinal Chemistry. 65: 323-36. PMID 23735281 DOI: 10.1016/j.ejmech.2013.04.062  0.52
2013 Duan YC, Zheng YC, Li XC, Wang MM, Ye XW, Guan YY, Liu GZ, Zheng JX, Liu HM. Design, synthesis and antiproliferative activity studies of novel 1,2,3-triazole-dithiocarbamate-urea hybrids. European Journal of Medicinal Chemistry. 64: 99-110. PMID 23644193 DOI: 10.1016/j.ejmech.2013.03.058  0.52
2013 Li K, Lin T, Zhang C, Fan X, Xu K, Bi L, Han J, Huang H, Liu H, Dong W, Duan Y, Yu M, Huang J. Optimal frequency of shock wave lithotripsy in urolithiasis treatment: a systematic review and meta-analysis of randomized controlled trials. The Journal of Urology. 190: 1260-7. PMID 23538240 DOI: 10.1016/j.juro.2013.03.075  0.96
2013 Han G, Wang J, Zeng F, Feng X, Yu J, Cao HY, Yi X, Zhou H, Jin LW, Duan Y, Wang YJ, Lei H. Characteristic transformation of blood transcriptome in Alzheimer's disease. Journal of Alzheimer's Disease : Jad. 35: 373-86. PMID 23411692 DOI: 10.3233/JAD-121963  0.56
2013 Zhang Y, Li Y, Wang Y, Shan B, Duan Y. 8p23.1 duplication detected by array-CGH with complete atrioventricular septal defect and unilateral hand preaxial hexadactyly. American Journal of Medical Genetics. Part A. 161: 561-5. PMID 23404914 DOI: 10.1002/ajmg.a.35596  0.52
2013 Wang T, Sessions AO, Lunde CS, Rouhani S, Glaeser RM, Duan Y, Facciotti MT. Deprotonation of D96 in bacteriorhodopsin opens the proton uptake pathway Structure. 21: 290-297. PMID 23394942 DOI: 10.1016/j.str.2012.12.018  0.52
2013 Duan YC, Ma YC, Zhang E, Shi XJ, Wang MM, Ye XW, Liu HM. Design and synthesis of novel 1,2,3-triazole-dithiocarbamate hybrids as potential anticancer agents. European Journal of Medicinal Chemistry. 62: 11-9. PMID 23353743 DOI: 10.1016/j.ejmech.2012.12.046  0.52
2013 Zhang Q, Lin L, Lu Y, Liu H, Duan Y, Zhu X, Zou C, Manning RD, Liu R. Interaction between nitric oxide and superoxide in the macula densa in aldosterone-induced alterations of tubuloglomerular feedback. American Journal of Physiology. Renal Physiology. 304: F326-32. PMID 23220724 DOI: 10.1152/ajprenal.00501.2012  0.96
2013 Zhu C, Zheng F, Sun T, Duan Y, Cao J, Feng H, Shang L, Zhu Y, Liu H. Interaction of avian influenza virus NS1 protein and nucleolar and coiled-body phosphoprotein 1. Virus Genes. 46: 287-92. PMID 23188192 DOI: 10.1007/s11262-012-0849-z  0.96
2012 Yuan YL, Wang YM, Liu H, Qin GF, Tang AG, Duan Y. Aberrant expression of E-cadherin in lung tissues of patients with probable lung cancer. Asian Pacific Journal of Cancer Prevention : Apjcp. 13: 5149-53. PMID 23244126  0.96
2012 Duan Y, Xing Z, Diao Z, Xu W, Li S, Du X, Wu G, Wang C, Lan T, Meng Z, Liu H, Wang F, Wu W, Xue Y. Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.). Plant Molecular Biology. 80: 429-42. PMID 22933119 DOI: 10.1007/s11103-012-9958-2  0.96
2012 Liang D, Han G, Feng X, Sun J, Duan Y, Lei H. Concerted perturbation observed in a hub network in Alzheimer's disease. Plos One. 7: e40498. PMID 22815752 DOI: 10.1371/journal.pone.0040498  0.56
2012 Wang J, Cieplak P, Cai Q, Hsieh MJ, Wang J, Duan Y, Luo R. Development of polarizable models for molecular mechanical calculations. 3. Polarizable water models conforming to Thole polarization screening schemes. The Journal of Physical Chemistry. B. 116: 7999-8008. PMID 22712654 DOI: 10.1021/jp212117d  0.48
2012 Wang J, Cieplak P, Li J, Cai Q, Hsieh MJ, Luo R, Duan Y. Development of polarizable models for molecular mechanical calculations. 4. van der Waals parametrization. The Journal of Physical Chemistry. B. 116: 7088-101. PMID 22612331 DOI: 10.1021/jp3019759  0.48
2012 Liu H, Duan Y, Jia Y, Gu Y, Li J, Yan C, Yang G. On-line simultaneous deproteinization of biological samples and trace enrichment of three dipine series using a poly(N-isopropylacrylamide-co-ethyleneglycol dimethacrylate) monolith. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 889: 55-60. PMID 22349122 DOI: 10.1016/j.jchromb.2012.01.030  0.96
2012 Sun J, Feng X, Liang D, Duan Y, Lei H. Down-regulation of energy metabolism in Alzheimer's disease is a protective response of neurons to the microenvironment. Journal of Alzheimer's Disease : Jad. 28: 389-402. PMID 22008267 DOI: 10.3233/JAD-2011-111313  0.56
2011 Katz MB, Graham GW, Duan Y, Liu H, Adamo C, Schlom DG, Pan X. Self-regeneration of Pd-LaFeO3 catalysts: new insight from atomic-resolution electron microscopy. Journal of the American Chemical Society. 133: 18090-3. PMID 22007950 DOI: 10.1021/ja2082284  0.32
2011 Wang T, Duan Y. Probing the stability-limiting regions of an antibody single-chain variable fragment: a molecular dynamics simulation study. Protein Engineering, Design & Selection : Peds. 24: 649-57. PMID 21729946 DOI: 10.1093/protein/gzr029  0.52
2011 Lei H, Chen C, Xiao Y, Duan Y. The protein folding network indicates that the ultrafast folding mutant of villin headpiece subdomain has a deeper folding funnel. The Journal of Chemical Physics. 134: 205104. PMID 21639484 DOI: 10.1063/1.3596272  0.56
2011 Liu Z, Wu X, Duan Y, Wang Y, Shan B, Kong J, Ma X, Bao Y. AID expression is correlated with Bcr-Abl expression in CML-LBC and can be down-regulated by As2O3 and/or imatinib. Leukemia Research. 35: 1355-9. PMID 21570118 DOI: 10.1016/j.leukres.2011.04.020  0.52
2011 Zhou Y, Duan Y, Yang Y, Faraggi E, Lei H. Trends in template/fragment-free protein structure prediction. Theoretical Chemistry Accounts. 128: 3-16. PMID 21423322 DOI: 10.1007/s00214-010-0799-2  0.56
2011 Wang J, Cieplak P, Li J, Wang J, Cai Q, Hsieh M, Lei H, Luo R, Duan Y. Development of polarizable models for molecular mechanical calculations II: induced dipole models significantly improve accuracy of intermolecular interaction energies. The Journal of Physical Chemistry. B. 115: 3100-11. PMID 21391583 DOI: 10.1021/jp1121382  0.56
2011 Wang J, Cieplak P, Li J, Hou T, Luo R, Duan Y. Development of polarizable models for molecular mechanical calculations I: parameterization of atomic polarizability. The Journal of Physical Chemistry. B. 115: 3091-9. PMID 21391553 DOI: 10.1021/jp112133g  0.48
2011 Wang T, Duan Y. Retinal release from opsin in molecular dynamics simulations. Journal of Molecular Recognition : Jmr. 24: 350-8. PMID 21360617 DOI: 10.1002/jmr.1087  0.52
2011 Li J, Liu R, Lam KS, Jin LW, Duan Y. Alzheimer's disease drug candidates stabilize A-β protein native structure by interacting with the hydrophobic core. Biophysical Journal. 100: 1076-82. PMID 21320453 DOI: 10.1016/j.bpj.2010.12.3741  0.36
2011 Cui Y, Liu H, Zhou M, Duan Y, Li N, Gong X, Hu R, Hong M, Hong F. Signaling pathway of inflammatory responses in the mouse liver caused by TiO2 nanoparticles. Journal of Biomedical Materials Research. Part A. 96: 221-9. PMID 21105171 DOI: 10.1002/jbm.a.32976  0.96
2010 Lei H, Su Y, Jin L, Duan Y. Folding network of villin headpiece subdomain. Biophysical Journal. 99: 3374-84. PMID 21081086 DOI: 10.1016/j.bpj.2010.08.081  0.56
2010 Duan Y, Diao Z, Liu H, Cai M, Wang F, Lan T, Wu W. Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.). Plant Molecular Biology. 74: 605-15. PMID 20938801 DOI: 10.1007/s11103-010-9703-7  0.96
2010 Cui Y, Gong X, Duan Y, Li N, Hu R, Liu H, Hong M, Zhou M, Wang L, Wang H, Hong F. Hepatocyte apoptosis and its molecular mechanisms in mice caused by titanium dioxide nanoparticles. Journal of Hazardous Materials. 183: 874-80. PMID 20724067 DOI: 10.1016/j.jhazmat.2010.07.109  0.96
2010 Li N, Duan Y, Hong M, Zheng L, Fei M, Zhao X, Wang J, Cui Y, Liu H, Cai J, Gong S, Wang H, Hong F. Spleen injury and apoptotic pathway in mice caused by titanium dioxide nanoparticules. Toxicology Letters. 195: 161-8. PMID 20381595 DOI: 10.1016/j.toxlet.2010.03.1116  0.96
2010 Duan Y, Liu J, Ma L, Li N, Liu H, Wang J, Zheng L, Liu C, Wang X, Zhao X, Yan J, Wang S, Wang H, Zhang X, Hong F. Toxicological characteristics of nanoparticulate anatase titanium dioxide in mice. Biomaterials. 31: 894-9. PMID 19857890 DOI: 10.1016/j.biomaterials.2009.10.003  0.96
2010 Duan Y, Li N, Liu C, Liu H, Cui Y, Wang H, Hong F. Interaction between nanoparticulate anatase TiO2 and lactate dehydrogenase. Biological Trace Element Research. 136: 302-13. PMID 19841870 DOI: 10.1007/s12011-009-8548-x  0.96
2010 Ma L, Liu J, Li N, Wang J, Duan Y, Yan J, Liu H, Wang H, Hong F. Oxidative stress in the brain of mice caused by translocated nanoparticulate TiO2 delivered to the abdominal cavity. Biomaterials. 31: 99-105. PMID 19783296 DOI: 10.1016/j.biomaterials.2009.09.028  0.96
2009 Cieplak P, Dupradeau FY, Duan Y, Wang J. Polarization effects in molecular mechanical force fields. Journal of Physics. Condensed Matter : An Institute of Physics Journal. 21: 333102. PMID 21828594 DOI: 10.1088/0953-8984/21/33/333102  0.48
2009 Li N, Ma L, Wang J, Zheng L, Liu J, Duan Y, Liu H, Zhao X, Wang S, Wang H, Hong F, Xie Y. Interaction Between Nano-Anatase TiO(2) and Liver DNA from Mice In Vivo. Nanoscale Research Letters. 5: 108-115. PMID 20652136 DOI: 10.1007/s11671-009-9451-2  0.96
2009 Xu LL, Liu HC, Wang DS, E LL, Xu L, Jin ZL, Duan YZ. Effects of BMP-2 and dexamethasone on osteogenic differentiation of rat dental follicle progenitor cells seeded on three-dimensional beta-TCP. Biomedical Materials (Bristol, England). 4: 065010. PMID 19966384 DOI: 10.1088/1748-6041/4/6/065010  0.32
2009 Lei H, Wang ZX, Wu C, Duan Y. Dual folding pathways of an alpha/beta protein from all-atom ab initio folding simulations. The Journal of Chemical Physics. 131: 165105. PMID 19894980 DOI: 10.1063/1.3238567  0.56
2009 Wang T, Duan Y. Ligand entry and exit pathways in the beta2-adrenergic receptor. Journal of Molecular Biology. 392: 1102-15. PMID 19665031 DOI: 10.1016/j.jmb.2009.07.093  0.52
2009 Wang YM, Jin KW, Li Y, Chen YR, Duan Y. [Gene mutation and mRNA expression of PUMA gene in non-small cell lung cancer]. Zhonghua Bing Li Xue Za Zhi Chinese Journal of Pathology. 38: 121-2. PMID 19573358  0.4
2009 Wang T, Duan Y. HIV co-receptor CCR5: structure and interactions with inhibitors. Infectious Disorders Drug Targets. 9: 279-88. PMID 19519482  0.52
2009 Ma L, Ze Y, Liu J, Liu H, Liu C, Li Z, Zhao J, Yan J, Duan Y, Xie Y, Hong F. Direct evidence for interaction between nano-anatase and superoxide dismutase from rat erythrocytes. Spectrochimica Acta. Part a, Molecular and Biomolecular Spectroscopy. 73: 330-5. PMID 19345606 DOI: 10.1016/j.saa.2009.02.041  0.96
2009 Duan Y, Liu H, Zhao J, Liu C, Li Z, Yan J, Ma L, Liu J, Xie Y, Ruan J, Hong F. The effects of nano-anatase TiO(2) on the activation of lactate dehydrogenase from rat heart. Biological Trace Element Research. 130: 162-71. PMID 19214398 DOI: 10.1007/s12011-009-8326-9  0.96
2008 Lei H, Deng X, Wang Z, Duan Y. The fast-folding HP35 double mutant has a substantially reduced primary folding free energy barrier. The Journal of Chemical Physics. 129: 155104. PMID 19045234 DOI: 10.1063/1.2995987  0.56
2008 Wu C, Wang Z, Lei H, Duan Y, Bowers MT, Shea JE. The binding of thioflavin T and its neutral analog BTA-1 to protofibrils of the Alzheimer's disease Abeta(16-22) peptide probed by molecular dynamics simulations. Journal of Molecular Biology. 384: 718-29. PMID 18851978 DOI: 10.1016/j.jmb.2008.09.062  0.56
2008 Lei H, Wu C, Wang ZX, Zhou Y, Duan Y. Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations. The Journal of Chemical Physics. 128: 235105. PMID 18570534 DOI: 10.1063/1.2937135  0.56
2008 Lei H, Duan Y. Protein folding and unfolding by all-atom molecular dynamics simulations. Methods in Molecular Biology (Clifton, N.J.). 443: 277-95. PMID 18446293 DOI: 10.1007/978-1-59745-177-2_15  0.56
2008 Liu H, Dastidar SG, Lei H, Zhang W, Lee MC, Duan Y. Conformational changes in protein function. Methods in Molecular Biology (Clifton, N.J.). 443: 258-75. PMID 18446292 DOI: 10.1007/978-1-59745-177-2_14  0.96
2008 Wang T, Duan Y. Binding modes of CCR5-targetting HIV entry inhibitors: partial and full antagonists. Journal of Molecular Graphics & Modelling. 26: 1287-95. PMID 18249144 DOI: 10.1016/j.jmgm.2007.12.003  0.52
2008 Liu H, Duan Y. Effects of posttranslational modifications on the structure and dynamics of histone H3 N-terminal Peptide. Biophysical Journal. 94: 4579-85. PMID 18192367 DOI: 10.1529/biophysj.107.115824  0.96
2007 Wang ZX, Wu C, Lei H, Duan Y. Accurate ab Initio Study on the Hydrogen-Bond Pairs in Protein Secondary Structures. Journal of Chemical Theory and Computation. 3: 1527-1537. PMID 26221082 DOI: 10.1021/ct700021f  0.56
2007 Lei H, Duan Y. Two-stage folding of HP-35 from ab initio simulations. Journal of Molecular Biology. 370: 196-206. PMID 17512537 DOI: 10.1016/j.jmb.2007.04.040  0.56
2007 Wang T, Duan Y. Chromophore channeling in the G-protein coupled receptor rhodopsin. Journal of the American Chemical Society. 129: 6970-1. PMID 17500517 DOI: 10.1021/ja0691977  0.52
2007 Lei H, Duan Y. Ab initio folding of albumin binding domain from all-atom molecular dynamics simulation. The Journal of Physical Chemistry. B. 111: 5458-63. PMID 17458992 DOI: 10.1021/jp0704867  0.56
2007 Lei H, Duan Y. Improved sampling methods for molecular simulation. Current Opinion in Structural Biology. 17: 187-91. PMID 17382533 DOI: 10.1016/j.sbi.2007.03.003  0.56
2007 Lei H, Wu C, Liu H, Duan Y. Folding free-energy landscape of villin headpiece subdomain from molecular dynamics simulations. Proceedings of the National Academy of Sciences of the United States of America. 104: 4925-30. PMID 17360390 DOI: 10.1073/pnas.0608432104  0.96
2007 Ping G, Dastidar SG, Duan Y. Statistical properties and kinetics of end-end contact formation of unfolded polypeptides: a systematic molecular dynamics study. The Journal of Chemical Physics. 126: 045108. PMID 17286518 DOI: 10.1063/1.2430712  0.32
2007 Wu C, Wang Z, Lei H, Zhang W, Duan Y. Dual binding modes of Congo red to amyloid protofibril surface observed in molecular dynamics simulations. Journal of the American Chemical Society. 129: 1225-32. PMID 17263405 DOI: 10.1021/ja0662772  0.56
2006 Lei H, Dastidar SG, Duan Y. Folding transition-state and denatured-state ensembles of FSD-1 from folding and unfolding simulations. The Journal of Physical Chemistry. B. 110: 22001-8. PMID 17064170 DOI: 10.1021/jp063716a  0.56
2006 Wu C, Lei H, Wang Z, Zhang W, Duan Y. Phenol red interacts with the protofibril-like oligomers of an amyloidogenic hexapeptide NFGAIL through both hydrophobic and aromatic contacts. Biophysical Journal. 91: 3664-72. PMID 16935948 DOI: 10.1529/biophysj.106.081877  0.56
2006 Yu MJ, Duan Y, Liu H, Zhang XM, Li HM. [Inhibited proliferation of B-lymphoma Raji cells and down-regulated expression of VEGF by arsenic trioxide]. Zhongguo Shi Yan Xue Ye Xue Za Zhi / Zhongguo Bing Li Sheng Li Xue Hui = Journal of Experimental Hematology / Chinese Association of Pathophysiology. 14: 704-7. PMID 16928304  0.96
2006 Yang L, Tan CH, Hsieh MJ, Wang J, Duan Y, Cieplak P, Caldwell J, Kollman PA, Luo R. New-generation amber united-atom force field. The Journal of Physical Chemistry. B. 110: 13166-76. PMID 16805629 DOI: 10.1021/jp060163v  0.48
2006 Luo L, Waang Y, Sun M, Su ZX, Ma N, Xie H, Wang W, Yu J, Yu M, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, et al. [Study on manpower allocation criteria of center of disease prevention and control in the context of province level, city level and county level]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 35: 1-3. PMID 16598918  0.36
2006 Wang ZX, Zhang W, Wu C, Lei H, Cieplak P, Duan Y. Strike a balance: optimization of backbone torsion parameters of AMBER polarizable force field for simulations of proteins and peptides. Journal of Computational Chemistry. 27: 781-90. PMID 16526038 DOI: 10.1002/jcc.20386  0.56
2006 Gabriel DW, Allen C, Schell M, Denny TP, Greenberg JT, Duan YP, Flores-Cruz Z, Huang Q, Clifford JM, Presting G, González ET, Reddy J, Elphinstone J, Swanson J, Yao J, et al. Identification of open reading frames unique to a select agent: Ralstonia solanacearum race 3 biovar 2. Molecular Plant-Microbe Interactions : Mpmi. 19: 69-79. PMID 16404955 DOI: 10.1094/MPMI-19-0069  0.4
2006 Lei H, Wu C, Wang Z, Duan Y. Molecular dynamics simulations and free energy analyses on the dimer formation of an amyloidogenic heptapeptide from human beta2-microglobulin: implication for the protofibril structure. Journal of Molecular Biology. 356: 1049-63. PMID 16403526 DOI: 10.1016/j.jmb.2005.11.087  0.56
2006 Zhang W, Duan Y. Grow to Fit Molecular Dynamics (G2FMD): an ab initio method for protein side-chain assignment and refinement. Protein Engineering, Design & Selection : Peds. 19: 55-65. PMID 16401632 DOI: 10.1093/protein/gzj001  0.32
2005 Chowdhury S, Lei H, Duan Y. Denatured-state ensemble and the early-stage folding of the G29A mutant of the B-domain of protein A. The Journal of Physical Chemistry. B. 109: 9073-81. PMID 16852080 DOI: 10.1021/jp0449814  0.56
2005 Fischer AJ, Rockwell NC, Jang AY, Ernst LA, Waggoner AS, Duan Y, Lei H, Lagarias JC. Multiple roles of a conserved GAF domain tyrosine residue in cyanobacterial and plant phytochromes. Biochemistry. 44: 15203-15. PMID 16285723 DOI: 10.1021/bi051633z  0.56
2005 Zhang W, Wu C, Duan Y. Convergence of replica exchange molecular dynamics. The Journal of Chemical Physics. 123: 154105. PMID 16252940 DOI: 10.1063/1.2056540  0.56
2005 Xie HB, Luo L, Su ZX, Wang WC, Wang Y, Sun M, Ma N, Yu J, Yu M, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, et al. [Human resources allocation in centers of disease prevention and control in China]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 390-2. PMID 16229254  0.52
2005 Su ZX, Xie HB, Luo L, Wang WC, Wang Y, Sun M, Ma N, Yu J, Yu M, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, et al. [Implementation analysis of public functions of 161 centers of disease prevention and control in 7 provinces]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 386-7. PMID 16229253  0.52
2005 Wu C, Lei H, Duan Y. Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent. Journal of the American Chemical Society. 127: 13530-7. PMID 16190716 DOI: 10.1021/ja050767x  0.56
2005 Li HM, Shi L, Duan Y, Liu H, Zhang XM. [Detection of IgH rearrangements using real-time quantitative PCR and its reaction parameters]. Zhongguo Shi Yan Xue Ye Xue Za Zhi / Zhongguo Bing Li Sheng Li Xue Hui = Journal of Experimental Hematology / Chinese Association of Pathophysiology. 13: 645-50. PMID 16129052  0.96
2005 Wang Y, Wang WC, Sun M, Su ZX, Ma N, Xie H, Luo L, Yu J, Yu M, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, et al. [Operational proportion of the public function and items of 161 centers of disease prevention and control in 7 provinces]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 260-2. PMID 16111023  0.52
2005 Su ZX, Ma N, Xie HB, Wang WC, Wang Y, Sun M, Luo L, Yu J, Yu M, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, et al. [Implementation analysis of public functions of centers of disease prevention and control of China]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 257-60. PMID 16111022  0.52
2005 Lee MC, Yang R, Duan Y. Comparison between Generalized-Born and Poisson-Boltzmann methods in physics-based scoring functions for protein structure prediction. Journal of Molecular Modeling. 12: 101-10. PMID 16096807 DOI: 10.1007/s00894-005-0013-y  0.32
2005 Zhao DW, Zhang T, Ma DQ, Wang W, Yuan CW, Duan Y. Disseminated Penicillium marneffei infection in acquired immunodeficiency syndrome: a case report. Chinese Medical Journal. 118: 1054-6. PMID 15978219  0.4
2005 Shao JJ, Yu JJ, Yu MZ, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, Yang F, Wang D, Yue J, Luo S, Luo L, Wang W, et al. [Fundamental strategies to address the problem of public health service delivery insufficiency of disease prevention and control system of China]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 135-7. PMID 15952642  0.52
2005 Zhang GP, Yu JJ, Yu MZ, Duan Y, Gong X, Chen Z, Wang H, Shi P, Liang Z, Yang F, Wang D, Yue J, Luo S, Luo L, Wang W, et al. [A study on the cause of public health service delivery insufficiency of disease prevention and control system of China]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 133-5. PMID 15952641  0.52
2005 Wang WC, Yu JJ, Yu MZ, Duan Y, Gong XG, Chen Z, Wang H, Shi P, Liang Z, Yang F, Wang D, Yue J, Luo S, Luo L, Wang Y, et al. [Reform steps of reestablishing disease prevention and control system of China]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 130-2. PMID 15952640  0.52
2005 Hao M, Yu J, Yu M, Duan Y. [Project summarize of "reestablishing disease prevention and control system of China"]. Wei Sheng Yan Jiu = Journal of Hygiene Research. 34: 2-4, 9. PMID 15862006  0.36
2005 Yang R, Lee MC, Yan H, Duan Y. Loop conformation and dynamics of the Escherichia coli HPPK apo-enzyme and its binary complex with MgATP. Biophysical Journal. 89: 95-106. PMID 15821168 DOI: 10.1529/biophysj.105.061556  0.32
2005 Lee MC, Deng J, Briggs JM, Duan Y. Large-scale conformational dynamics of the HIV-1 integrase core domain and its catalytic loop mutants. Biophysical Journal. 88: 3133-46. PMID 15731379 DOI: 10.1529/biophysj.104.058446  0.32
2005 Wu C, Lei H, Duan Y. The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent. Biophysical Journal. 88: 2897-906. PMID 15653723 DOI: 10.1529/biophysj.104.055574  0.56
2004 Liu Z, Xu S, Qin M, Zhao L, Li F, Duan Y, Liang Z. [Resection and reconstruction of carina in the treatment of advanced lung cancer involving carina]. Zhongguo Fei Ai Za Zhi = Chinese Journal of Lung Cancer. 7: 434-7. PMID 21244799 DOI: 10.3779/j.issn.1009-3419.2004.05.14  0.52
2004 Lei H, Duan Y. Incorporating intermolecular distance into protein-protein docking. Protein Engineering, Design & Selection : Peds. 17: 837-45. PMID 15713781 DOI: 10.1093/protein/gzh100  0.56
2004 Lei H, Duan Y. The role of plastic beta-hairpin and weak hydrophobic core in the stability and unfolding of a full sequence design protein. The Journal of Chemical Physics. 121: 12104-11. PMID 15634176 DOI: 10.1063/1.1822916  0.56
2004 Liu XY, Yin LD, Duan Y, Wang YM, Chen BW, Wang Y. [Study on mutation of presenilin-1 gene in familial Alzheimer's disease]. Zhonghua Yi Xue Yi Chuan Xue Za Zhi = Zhonghua Yixue Yichuanxue Zazhi = Chinese Journal of Medical Genetics. 21: 455-8. PMID 15476169  0.52
2004 Wu C, Lei H, Duan Y. Formation of partially ordered oligomers of amyloidogenic hexapeptide (NFGAIL) in aqueous solution observed in molecular dynamics simulations. Biophysical Journal. 87: 3000-9. PMID 15326028 DOI: 10.1529/biophysj.104.047076  0.56
2004 Lee MC, Duan Y. Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model. Proteins. 55: 620-34. PMID 15103626 DOI: 10.1002/prot.10470  0.32
2003 Duan Y, Wu C, Chowdhury S, Lee MC, Xiong G, Zhang W, Yang R, Cieplak P, Luo R, Lee T, Caldwell J, Wang J, Kollman P. A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations. Journal of Computational Chemistry. 24: 1999-2012. PMID 14531054 DOI: 10.1002/jcc.10349  0.56
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