| Year |
Citation |
Score |
| 2023 |
Warner BR, Bundschuh R, Fredrick K. Roles of the leader-trailer helix and antitermination complex in biogenesis of the 30S ribosomal subunit. Nucleic Acids Research. PMID 37102690 DOI: 10.1093/nar/gkad316 |
0.39 |
|
| 2023 |
McNutt ZA, Roy B, Gemler BT, Shatoff EA, Moon KM, Foster LJ, Bundschuh R, Fredrick K. Ribosomes lacking bS21 gain function to regulate protein synthesis in Flavobacterium johnsoniae. Nucleic Acids Research. 51: 1927-1942. PMID 36727479 DOI: 10.1093/nar/gkad047 |
0.352 |
|
| 2021 |
McNutt ZA, Gandhi MD, Shatoff EA, Roy B, Devaraj A, Bundschuh R, Fredrick K. Comparative Analysis of anti-Shine- Dalgarno Function in and . Frontiers in Molecular Biosciences. 8: 787388. PMID 34966783 DOI: 10.3389/fmolb.2021.787388 |
0.781 |
|
| 2020 |
Gibbs MR, Moon KM, Warner BR, Chen M, Bundschuh R, Foster LJ, Fredrick K. Functional Analysis of BipA in E. coli Reveals the Natural Plasticity of 50S Subunit Assembly. Journal of Molecular Biology. PMID 32710983 DOI: 10.1016/J.Jmb.2020.07.013 |
0.381 |
|
| 2020 |
Chen M, Fredrick K. RNA polymerase's Relationship with the Ribosome: Not So Physical, Most of the Time. Journal of Molecular Biology. PMID 32198117 DOI: 10.1016/J.Jmb.2020.03.018 |
0.411 |
|
| 2020 |
Ying L, Zhu H, Fosso MY, Garneau-Tsodikova S, Fredrick K. Modified Aminoglycosides Bind Nucleic Acids in High-Molecular-Weight Complexes. Antibiotics (Basel, Switzerland). 9. PMID 32098020 DOI: 10.3390/Antibiotics9020093 |
0.306 |
|
| 2019 |
Baez WD, Roy B, McNutt ZA, Shatoff EA, Chen S, Bundschuh R, Fredrick K. Global analysis of protein synthesis in Flavobacterium johnsoniae reveals the use of Kozak-like sequences in diverse bacteria. Nucleic Acids Research. PMID 31602466 DOI: 10.1093/Nar/Gkz855 |
0.404 |
|
| 2018 |
Hoffer ED, Maehigashi T, Fredrick K, Dunham CM. Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding. Nucleic Acids Research. PMID 30476222 DOI: 10.2210/Pdb6Bz7/Pdb |
0.699 |
|
| 2018 |
Ying L, Zhu H, Shoji S, Fredrick K. Roles of specific aminoglycoside-ribosome interactions in the inhibition of translation. Rna (New York, N.Y.). PMID 30413565 DOI: 10.1261/Rna.068460.118 |
0.769 |
|
| 2018 |
Zhao D, Baez W, Fredrick K, Bundschuh R. RiboProP: A Probabilistic Ribosome Positioning Algorithm for Ribosome Profiling. Bioinformatics (Oxford, England). PMID 30304369 DOI: 10.1093/Bioinformatics/Bty854 |
0.373 |
|
| 2018 |
Chen M, Fredrick K. Measures of single- versus multiple-round translation argue against a mechanism to ensure coupling of transcription and translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 30275301 DOI: 10.1073/Pnas.1812940115 |
0.422 |
|
| 2018 |
Vo MN, Terrey M, Lee JW, Roy B, Moresco JJ, Sun L, Fu H, Liu Q, Weber TG, Yates JR, Fredrick K, Schimmel P, Ackerman SL. ANKRD16 prevents neuron loss caused by an editing-defective tRNA synthetase. Nature. PMID 29769718 DOI: 10.1038/S41586-018-0137-8 |
0.406 |
|
| 2018 |
Dai X, Zhu M, Warren M, Balakrishnan R, Okano H, Williamson JR, Fredrick K, Hwa T. Slowdown of Translational Elongation inunder Hyperosmotic Stress. Mbio. 9. PMID 29440576 DOI: 10.1128/Mbio.02375-17 |
0.349 |
|
| 2017 |
Gibbs MR, Fredrick K. Roles of elusive translational GTPases come to light and inform on the process of ribosome biogenesis in bacteria. Molecular Microbiology. PMID 29235176 DOI: 10.1111/Mmi.13895 |
0.418 |
|
| 2017 |
Roy B, Liu Q, Shoji S, Fredrick K. IF2 and unique features of initiator tRNA(fMet) help establish the translational reading frame. Rna Biology. 0. PMID 28914580 DOI: 10.1080/15476286.2017.1379636 |
0.812 |
|
| 2017 |
Gibbs MR, Moon KM, Chen M, Balakrishnan R, Foster LJ, Fredrick K. Conserved GTPase LepA (Elongation Factor 4) functions in biogenesis of the 30S subunit of the 70S ribosome. Proceedings of the National Academy of Sciences of the United States of America. PMID 28096346 DOI: 10.1073/Pnas.1613665114 |
0.391 |
|
| 2016 |
Dai X, Zhu M, Warren M, Balakrishnan R, Patsalo V, Okano H, Williamson JR, Fredrick K, Wang YP, Hwa T. Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth. Nature Microbiology. 2: 16231. PMID 27941827 DOI: 10.1038/Nmicrobiol.2016.231 |
0.37 |
|
| 2016 |
Fleming IM, Paris Z, Gaston KW, Balakrishnan R, Fredrick K, Rubio MA, Alfonzo JD. A tRNA methyltransferase paralog is important for ribosome stability and cell division in Trypanosoma brucei. Scientific Reports. 6: 21438. PMID 26888608 DOI: 10.1038/Srep21438 |
0.427 |
|
| 2016 |
Liu Q, Fredrick K. Intersubunit bridges of the bacterial ribosome. Journal of Molecular Biology. PMID 26880335 DOI: 10.1016/J.Jmb.2016.02.009 |
0.491 |
|
| 2016 |
Ying L, Fredrick K. Epistasis analysis of 16S rRNA ram mutations helps define the conformational dynamics of the ribosome that influence decoding. Rna (New York, N.Y.). 22: 499-505. PMID 26873598 DOI: 10.1261/Rna.054486.115 |
0.434 |
|
| 2015 |
Liu Q, Fredrick K. Roles of helix H69 of 23S rRNA in translation initiation. Proceedings of the National Academy of Sciences of the United States of America. 112: 11559-64. PMID 26324939 DOI: 10.1073/Pnas.1507703112 |
0.501 |
|
| 2015 |
McGinnis JL, Liu Q, Lavender CA, Devaraj A, McClory SP, Fredrick K, Weeks KM. In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state. Proceedings of the National Academy of Sciences of the United States of America. 112: 2425-30. PMID 25675474 DOI: 10.1073/Pnas.1411514112 |
0.794 |
|
| 2015 |
Fredrick K. Another look at mutations in ribosomal protein S4 lends strong support to the domain closure model. Journal of Bacteriology. 197: 1014-6. PMID 25548248 DOI: 10.1128/Jb.02579-14 |
0.372 |
|
| 2014 |
Balakrishnan R, Oman K, Shoji S, Bundschuh R, Fredrick K. The conserved GTPase LepA contributes mainly to translation initiation in Escherichia coli. Nucleic Acids Research. 42: 13370-83. PMID 25378333 DOI: 10.1093/Nar/Gku1098 |
0.781 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Fredrik K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome. Elife. 3: e03406. PMID 25114092 DOI: 10.7554/Elife.03406 |
0.585 |
|
| 2014 |
McClory SP, Devaraj A, Fredrick K. Distinct functional classes of ram mutations in 16S rRNA. Rna (New York, N.Y.). 20: 496-504. PMID 24572811 DOI: 10.1261/Rna.043331.113 |
0.808 |
|
| 2014 |
Fredrick K, Ibba M. The ABCs of the ribosome. Nature Structural & Molecular Biology. 21: 115-6. PMID 24500425 DOI: 10.1038/Nsmb.2765 |
0.435 |
|
| 2014 |
Xia X, Piao X, Fredrick K, Bong D. Bifacial PNA complexation inhibits enzymatic access to DNA and RNA. Chembiochem : a European Journal of Chemical Biology. 15: 31-6. PMID 24259287 DOI: 10.1002/Cbic.201300536 |
0.322 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Correction: Direct measurement of the mechanical work during translocation by the ribosome Elife. 3. DOI: 10.7554/Elife.04563 |
0.531 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen J, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Author response: Direct measurement of the mechanical work during translocation by the ribosome Elife. DOI: 10.7554/Elife.03406.010 |
0.513 |
|
| 2014 |
Liu T, Kaplan A, Alexander L, Yan S, Wen JD, Lancaster L, Wickersham CE, Fredrick K, Noller H, Tinoco I, Bustamante CJ. Direct measurement of the mechanical work during translocation by the ribosome Elife. 3: 1-12. DOI: 10.7554/eLife.03406 |
0.476 |
|
| 2013 |
Fagan CE, Dunkle JA, Maehigashi T, Dang MN, Devaraj A, Miles SJ, Qin D, Fredrick K, Dunham CM. Reorganization of an intersubunit bridge induced by disparate 16S ribosomal ambiguity mutations mimics an EF-Tu-bound state. Proceedings of the National Academy of Sciences of the United States of America. 110: 9716-21. PMID 23630274 DOI: 10.1073/Pnas.1301585110 |
0.798 |
|
| 2013 |
Liu Q, Fredrick K. Contribution of intersubunit bridges to the energy barrier of ribosomal translocation. Nucleic Acids Research. 41: 565-74. PMID 23161696 DOI: 10.1093/Nar/Gks1074 |
0.426 |
|
| 2013 |
Kaplan A, Liu T, Wickersham C, Wen J, Lancaster L, Fredrick K, Noller HF, Tinoco I, Bustamante C. Mechanical Force during Translocation by the Ribosome Biophysical Journal. 104: 258a. DOI: 10.1016/J.Bpj.2012.11.1449 |
0.601 |
|
| 2012 |
Qin D, Liu Q, Devaraj A, Fredrick K. Role of helix 44 of 16S rRNA in the fidelity of translation initiation. Rna (New York, N.Y.). 18: 485-95. PMID 22279149 DOI: 10.1261/Rna.031203.111 |
0.78 |
|
| 2010 |
Devaraj A, Fredrick K. Short spacing between the Shine-Dalgarno sequence and P codon destabilizes codon-anticodon pairing in the P site to promote +1 programmed frameshifting. Molecular Microbiology. 78: 1500-9. PMID 21143320 DOI: 10.1111/J.1365-2958.2010.07421.X |
0.795 |
|
| 2010 |
McClory SP, Leisring JM, Qin D, Fredrick K. Missense suppressor mutations in 16S rRNA reveal the importance of helices h8 and h14 in aminoacyl-tRNA selection. Rna (New York, N.Y.). 16: 1925-34. PMID 20699303 DOI: 10.1261/Rna.2228510 |
0.386 |
|
| 2010 |
Fredrick K, Ibba M. How the sequence of a gene can tune its translation. Cell. 141: 227-9. PMID 20403320 DOI: 10.1016/J.Cell.2010.03.033 |
0.303 |
|
| 2010 |
Shoji S, Janssen BD, Hayes CS, Fredrick K. Translation factor LepA contributes to tellurite resistance in Escherichia coli but plays no apparent role in the fidelity of protein synthesis. Biochimie. 92: 157-63. PMID 19925844 DOI: 10.1016/J.Biochi.2009.11.002 |
0.796 |
|
| 2009 |
Garza-Sánchez F, Shoji S, Fredrick K, Hayes CS. RNase II is important for A-site mRNA cleavage during ribosome pausing. Molecular Microbiology. 73: 882-97. PMID 19627501 DOI: 10.1111/J.1365-2958.2009.06813.X |
0.795 |
|
| 2009 |
Shoji S, Abdi NM, Bundschuh R, Fredrick K. Contribution of ribosomal residues to P-site tRNA binding. Nucleic Acids Research. 37: 4033-42. PMID 19417061 DOI: 10.1093/Nar/Gkp296 |
0.805 |
|
| 2009 |
Ling J, So BR, Yadavalli SS, Roy H, Shoji S, Fredrick K, Musier-Forsyth K, Ibba M. Resampling and editing of mischarged tRNA prior to translation elongation. Molecular Cell. 33: 654-60. PMID 19285947 DOI: 10.1016/J.Molcel.2009.01.031 |
0.794 |
|
| 2009 |
Shoji S, Walker SE, Fredrick K. Ribosomal translocation: one step closer to the molecular mechanism. Acs Chemical Biology. 4: 93-107. PMID 19173642 DOI: 10.1021/Cb8002946 |
0.796 |
|
| 2009 |
Qin D, Fredrick K. Control of translation initiation involves a factor-induced rearrangement of helix 44 of 16S ribosomal RNA. Molecular Microbiology. 71: 1239-49. PMID 19154330 DOI: 10.1111/J.1365-2958.2009.06598.X |
0.507 |
|
| 2009 |
Devaraj A, Shoji S, Holbrook ED, Fredrick K. A role for the 30S subunit E site in maintenance of the translational reading frame. Rna (New York, N.Y.). 15: 255-65. PMID 19095617 DOI: 10.1261/Rna.1320109 |
0.787 |
|
| 2008 |
Walker SE, Shoji S, Pan D, Cooperman BS, Fredrick K. Role of hybrid tRNA-binding states in ribosomal translocation. Proceedings of the National Academy of Sciences of the United States of America. 105: 9192-7. PMID 18591673 DOI: 10.1073/Pnas.0710146105 |
0.806 |
|
| 2008 |
Borovinskaya MA, Shoji S, Fredrick K, Cate JH. Structural basis for hygromycin B inhibition of protein biosynthesis. Rna (New York, N.Y.). 14: 1590-9. PMID 18567815 DOI: 10.1261/Rna.1076908 |
0.788 |
|
| 2008 |
Walker SE, Fredrick K. Preparation and evaluation of acylated tRNAs. Methods (San Diego, Calif.). 44: 81-6. PMID 18241790 DOI: 10.1016/J.Ymeth.2007.09.003 |
0.594 |
|
| 2007 |
Qin D, Abdi NM, Fredrick K. Characterization of 16S rRNA mutations that decrease the fidelity of translation initiation. Rna (New York, N.Y.). 13: 2348-55. PMID 17942743 DOI: 10.1261/Rna.715307 |
0.464 |
|
| 2007 |
Ling J, Roy H, Qin D, Rubio MA, Alfonzo JD, Fredrick K, Ibba M. Pathogenic mechanism of a human mitochondrial tRNAPhe mutation associated with myoclonic epilepsy with ragged red fibers syndrome. Proceedings of the National Academy of Sciences of the United States of America. 104: 15299-304. PMID 17878308 DOI: 10.1073/Pnas.0704441104 |
0.41 |
|
| 2007 |
Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH. A steric block in translation caused by the antibiotic spectinomycin. Acs Chemical Biology. 2: 545-52. PMID 17696316 DOI: 10.1021/Cb700100N |
0.791 |
|
| 2006 |
Shoji S, Walker SE, Fredrick K. Reverse translocation of tRNA in the ribosome. Molecular Cell. 24: 931-42. PMID 17189194 DOI: 10.1016/J.Molcel.2006.11.025 |
0.81 |
|
| 2006 |
Walker SE, Fredrick K. Recognition and positioning of mRNA in the ribosome by tRNAs with expanded anticodons. Journal of Molecular Biology. 360: 599-609. PMID 16730356 DOI: 10.1016/J.Jmb.2006.05.006 |
0.684 |
|
| 2005 |
McGarry KG, Walker SE, Wang H, Fredrick K. Destabilization of the P site codon-anticodon helix results from movement of tRNA into the P/E hybrid state within the ribosome. Molecular Cell. 20: 613-22. PMID 16307924 DOI: 10.1016/J.Molcel.2005.10.007 |
0.658 |
|
| 2005 |
Yassin A, Fredrick K, Mankin AS. Deleterious mutations in small subunit ribosomal RNA identify functional sites and potential targets for antibiotics. Proceedings of the National Academy of Sciences of the United States of America. 102: 16620-5. PMID 16269538 DOI: 10.1073/Pnas.0508444102 |
0.677 |
|
| 2005 |
Abdi NM, Fredrick K. Contribution of 16S rRNA nucleotides forming the 30S subunit A and P sites to translation in Escherichia coli. Rna (New York, N.Y.). 11: 1624-32. PMID 16177132 DOI: 10.1261/Rna.2118105 |
0.497 |
|
| 2005 |
Noller HF, Hoang L, Fredrick K. The 30S ribosomal P site: A function of 16S rRNA Febs Letters. 579: 855-858. PMID 15680962 DOI: 10.1016/J.Febslet.2004.11.026 |
0.766 |
|
| 2005 |
Noller HF, Hoang L, Fredrick K, Lancaster L, Ali I, Takyar S, Hickerson R. Toward an Understanding of the Mechanism and Mechanics of the Ribosome Gbm Annual Spring Meeting Mosbach 2005. 2005. DOI: 10.1240/sav_gbm_2005_m_001088 |
0.628 |
|
| 2004 |
Hoang L, Fredrick K, Noller HF. Creating ribosomes with an all-RNA 30S subunit P site Proceedings of the National Academy of Sciences of the United States of America. 101: 12439-12443. PMID 15308780 DOI: 10.1073/Pnas.0405227101 |
0.754 |
|
| 2003 |
Fredrick K, Noller HF. Catalysis of ribosomal translocation by sparsomycin Science. 300: 1159-1162. PMID 12750524 DOI: 10.1126/Science.1084571 |
0.644 |
|
| 2002 |
Fredrick K, Noller HF. Accurate translocation of mRNA by the ribosome requires a peptidyl group or its analog on the tRNA moving into the 30S P site Molecular Cell. 9: 1125-1131. PMID 12049747 DOI: 10.1016/S1097-2765(02)00523-3 |
0.672 |
|
| 2001 |
Noller HF, Yusupov MM, Yusupova GZ, Baucom A, Lieberman K, Lancaster L, Dallas A, Fredrick K, Earnest TN, Cate JHD. Structure of the ribosome at 5.5 Å resolution and its interactions with functional ligands Cold Spring Harbor Symposia On Quantitative Biology. 66: 57-66. PMID 12762008 DOI: 10.1101/Sqb.2001.66.57 |
0.652 |
|
| 2000 |
Fredrick K, Dunny GM, Noller HF. Tagging ribosomal protein S7 allows rapid identification of mutants defective in assembly and function of 30 S subunits Journal of Molecular Biology. 298: 379-394. PMID 10772857 DOI: 10.1006/Jmbi.2000.3563 |
0.6 |
|
| 1997 |
Fredrick K, Helmann JD. RNA polymerase sigma factor determines start-site selection but is not required for upstream promoter element activation on heteroduplex (bubble) templates Proceedings of the National Academy of Sciences of the United States of America. 94: 4982-4987. PMID 9144176 DOI: 10.1073/Pnas.94.10.4982 |
0.615 |
|
| 1996 |
Fredrick K, Helmann JD. FlgM is a primary regulator of σ(D) activity, and its absence restores motility to a sinR mutant Journal of Bacteriology. 178: 7010-7013. PMID 8955328 DOI: 10.1128/Jb.178.23.7010-7013.1996 |
0.525 |
|
| 1995 |
Fredrick K, Caramori T, Chen YF, Galizzi A, Helmann JD. Promoter architecture in the flagellar regulon of Bacillus subtilis: High-level expression of flagellin by the σD RNA polymerase requires an upstream promoter element Proceedings of the National Academy of Sciences of the United States of America. 92: 2582-2586. PMID 7708689 DOI: 10.1073/Pnas.92.7.2582 |
0.568 |
|
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