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William E. Stumph - Publications

Affiliations: 
Biology (Joint Doctoral SDSU) University of California, San Diego and San Diego State University 
Area:
Molecular Biology, Cell Biology, Biochemistry
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Kim MK, Tranvo A, Hurlburt AM, Verma N, Phan P, Luo J, Ranish J, Stumph WE. Assembly of SNAPc, Bdp1, and TBP on the U6 snRNA gene promoter in . Molecular and Cellular Biology. PMID 32253345 DOI: 10.1128/Mcb.00641-19  0.708
2018 Verma N, Hurlburt AM, Wolfe A, Kim MK, Kang YS, Kang JJ, Stumph WE. Bdp1 interacts with SNAPc bound to a U6, but not U1, snRNA gene promoter element to establish a stable protein-DNA complex. Febs Letters. PMID 29932462 DOI: 10.1002/1873-3468.13169  0.729
2016 Kang JJ, Kang YS, Stumph WE. TFIIIB Subunit Locations on U6 Gene Promoter DNA Mapped by Site-specific Protein-DNA Photo-cross-linking. Febs Letters. PMID 27112515 DOI: 10.1002/1873-3468.12185  0.634
2014 Kang YS, Kurano M, Stumph WE. The Myb domain of the largest subunit of SNAPc adopts different architectural configurations on U1 and U6 snRNA gene promoter sequences. Nucleic Acids Research. 42: 12440-54. PMID 25324315 DOI: 10.1093/Nar/Gku905  0.737
2013 Verma N, Hung KH, Kang JJ, Barakat NH, Stumph WE. Differential utilization of TATA box-binding protein (TBP) and TBP-related factor 1 (TRF1) at different classes of RNA polymerase III promoters. The Journal of Biological Chemistry. 288: 27564-70. PMID 23955442 DOI: 10.1074/Jbc.C113.503094  0.629
2012 Doherty MT, Kang YS, Lee C, Stumph WE. Architectural arrangement of the small nuclear RNA (snRNA)-activating protein complex 190 subunit (SNAP190) on U1 snRNA gene promoter DNA. The Journal of Biological Chemistry. 287: 39369-79. PMID 23038247 DOI: 10.1074/Jbc.M112.407775  0.733
2012 Hung KH, Stumph WE. Localization of residues in a novel DNA-binding domain of DmSNAP43 required for DmSNAPc DNA-binding activity. Febs Letters. 586: 841-6. PMID 22449969 DOI: 10.1016/J.Febslet.2012.02.009  0.512
2011 Hung KH, Stumph WE. Regulation of snRNA gene expression by the Drosophila melanogaster small nuclear RNA activating protein complex (DmSNAPc). Critical Reviews in Biochemistry and Molecular Biology. 46: 11-26. PMID 20925482 DOI: 10.3109/10409238.2010.518136  0.617
2010 Kim MK, Kang YS, Lai HT, Barakat NH, Magante D, Stumph WE. Identification of SNAPc subunit domains that interact with specific nucleotide positions in the U1 and U6 gene promoters. Molecular and Cellular Biology. 30: 2411-23. PMID 20212087 DOI: 10.1128/Mcb.01508-09  0.773
2010 Kim MK, Kang YS, Lai HT, Barakat NH, Magante D, Stumph WE. Identification of SNAPc subunit domains that interact with specific nucleotide positions in the U1 and U6 gene promoters (Molecular and Cellular Biology (2010) 30, 10, (2411-2423)) Molecular and Cellular Biology. 30: 5257. DOI: 10.1128/MCB.01087-10  0.728
2009 Hung KH, Titus M, Chiang SC, Stumph WE. A map of Drosophila melanogaster small nuclear RNA-activating protein complex (DmSNAPc) domains involved in subunit assembly and DNA binding. The Journal of Biological Chemistry. 284: 22568-79. PMID 19556241 DOI: 10.1074/Jbc.M109.027961  0.769
2008 Lai HT, Kang YS, Stumph WE. Subunit stoichiometry of the Drosophila melanogaster small nuclear RNA activating protein complex (SNAPc). Febs Letters. 582: 3734-8. PMID 18948103 DOI: 10.1016/J.Febslet.2008.09.059  0.751
2008 Barakat NH, Stumph WE. TBP recruitment to the U1 snRNA gene promoter is disrupted by substituting a U6 proximal sequence element A (PSEA) for the U1 PSEA. Febs Letters. 582: 2413-6. PMID 18547530 DOI: 10.1016/J.Febslet.2008.06.003  0.684
2007 Hernandez G, Valafar F, Stumph WE. Insect small nuclear RNA gene promoters evolve rapidly yet retain conserved features involved in determining promoter activity and RNA polymerase specificity. Nucleic Acids Research. 35: 21-34. PMID 17148477 DOI: 10.1093/Nar/Gkl982  0.644
2005 Lai HT, Chen H, Li C, McNamara-Schroeder KJ, Stumph WE. The PSEA promoter element of the Drosophila U1 snRNA gene is sufficient to bring DmSNAPc into contact with 20 base pairs of downstream DNA. Nucleic Acids Research. 33: 6579-86. PMID 16314318 DOI: 10.1093/Nar/Gki972  0.753
2004 Li C, Harding GA, Parise J, McNamara-Schroeder KJ, Stumph WE. Architectural arrangement of cloned proximal sequence element-binding protein subunits on Drosophila U1 and U6 snRNA gene promoters. Molecular and Cellular Biology. 24: 1897-906. PMID 14966271 DOI: 10.1128/Mcb.24.5.1897-1906.2004  0.763
2001 McNamara-Schroeder KJ, Hennessey RF, Harding GA, Jensen RC, Stumph WE. The Drosophila U1 and U6 gene proximal sequence elements act as important determinants of the RNA polymerase specificity of small nuclear RNA gene promoters in vitro and in vivo. The Journal of Biological Chemistry. 276: 31786-92. PMID 11431466 DOI: 10.1074/Jbc.M101273200  0.688
2000 Hardin SB, Ortler CJ, McNamara-Schroeder KJ, Stumph WE. Similarities and differences in the conformation of protein-DNA complexes at the U1 and U6 snRNA gene promoters. Nucleic Acids Research. 28: 2771-8. PMID 10908334 DOI: 10.1093/Nar/28.14.2771  0.726
1998 Wang Y, Stumph WE. Identification and topological arrangement of Drosophila proximal sequence element (PSE)-binding protein subunits that contact the PSEs of U1 and U6 small nuclear RNA genes. Molecular and Cellular Biology. 18: 1570-9. PMID 9488474 DOI: 10.1128/Mcb.18.3.1570  0.758
1998 Miyake JH, Szeto DP, Stumph WE. Analysis of the structure and expression of the chicken gene encoding a homolog of the human RREB-1 transcription factor. Gene. 202: 177-86. PMID 9427563 DOI: 10.1016/S0378-1119(97)00491-5  0.423
1998 Jensen RC, Wang Y, Hardin SB, Stumph WE. The proximal sequence element (PSE) plays a major role in establishing the RNA polymerase specificity of Drosophila U-snRNA genes. Nucleic Acids Research. 26: 616-22. PMID 9421524 DOI: 10.1093/Nar/26.2.616  0.666
1997 Su Y, Song Y, Wang Y, Jessop L, Zhan L, Stumph WE. Characterization of a Drosophila proximal-sequence-element-binding protein involved in transcription of small nuclear RNA genes European Journal of Biochemistry. 248: 231-237. PMID 9310383 DOI: 10.1111/J.1432-1033.1997.T01-1-00231.X  0.696
1996 Bhathal HS, Stumph WE. Genomic and cDNA structures of the gene encoding the chicken ZF5 DNA binding protein. Biochimica Et Biophysica Acta. 1308: 114-8. PMID 8764828 DOI: 10.1016/0167-4781(96)00094-2  0.522
1996 Wang Y, Jensen RC, Stumph WE. Role of TATA box sequence and orientation in determining RNA polymerase II/III transcription specificity. Nucleic Acids Research. 24: 3100-6. PMID 8760900 DOI: 10.1093/Nar/24.15.3100  0.587
1996 Bhathal HS, Zamrod Z, Tobaru T, Stumph WE. Identification of proximal sequence element nucleotides contributing to the differential expression of variant U4 small nuclear RNA genes. The Journal of Biological Chemistry. 270: 27629-33. PMID 7499227 DOI: 10.1074/Jbc.270.46.27629  0.624
1995 Wang Y, Stumph WE. RNA polymerase II/III transcription specificity determined by TATA box orientation. Proceedings of the National Academy of Sciences of the United States of America. 92: 8606-10. PMID 7567983 DOI: 10.1073/pnas.92.19.8606  0.54
1993 Cheung CH, Fan QN, Stumph WE. Structural requirements for the functional activity of a U1 snRNA gene enhancer. Nucleic Acids Research. 21: 281-7. PMID 8441636 DOI: 10.1093/Nar/21.2.281  0.605
1993 Zamrod Z, Tyree CM, Song Y, Stumph WE. In vitro transcription of a Drosophila U1 small nuclear RNA gene requires TATA box-binding protein and two proximal cis-acting elements with stringent spacing requirements. Molecular and Cellular Biology. 13: 5918-27. PMID 8355718 DOI: 10.1128/Mcb.13.9.5918  0.666
1991 Zamrod Z, Stumph WE. U4B snRNA gene enhancer activity requires functional octamer and SPH motifs. Nucleic Acids Research. 18: 7323-30. PMID 2259626 DOI: 10.1093/Nar/18.24.7323  0.603
1990 Roebuck KA, Szeto DP, Green KP, Fan QN, Stumph WE. Octamer and SPH motifs in the U1 enhancer cooperate to activate U1 RNA gene expression Molecular and Cellular Biology. 10: 341-352. PMID 2294407 DOI: 10.1128/Mcb.10.1.341  0.687
1990 Roebuck KA, Stumph WE. Induction of an altered DNA conformation by an inversion rearrangement in the 5′-flanking DNA of a U1 RNA gene Biochemical and Biophysical Research Communications. 172: 402-408. PMID 2241942 DOI: 10.1016/0006-291X(90)90687-I  0.558
1989 Korf GM, Botros IW, Stumph WE. Developmental and tissue-specific expression of U4 small nuclear RNA genes. Molecular and Cellular Biology. 8: 5566-9. PMID 3244366 DOI: 10.1128/Mcb.8.12.5566  0.573
1989 McNamara KJ, Stumph WE. Chickens lack a homolog of mammalian U4A small nuclear RNA. Nucleic Acids Research. 17: 6748. PMID 2780307 DOI: 10.1093/Nar/17.16.6748  0.526
1987 Mcnamara KJ, Walker RJ, Roebuck KA, Stumph WE. Transcriptional signals of a U4 small nuclear RNA gene Nucleic Acids Research. 15: 9239-9254. PMID 3684593 DOI: 10.1093/Nar/15.22.9239  0.668
1987 Roebuck KA, Walker RJ, Stumph WE. Multiple functional motifs in the chicken U1 RNA gene enhancer Molecular and Cellular Biology. 7: 4185-4193. PMID 3437887 DOI: 10.1128/Mcb.7.12.4185  0.688
1986 Hoffman ML, Korf GM, McNamara KJ, Stumph WE. Structural and functional analysis of chicken U4 small nuclear RNA genes Molecular and Cellular Biology. 6: 3910-3919. PMID 3025618 DOI: 10.1128/Mcb.6.11.3910  0.658
1986 Korf GM, Stumph WE. Chicken U2 and U1 RNA genes are found in very different genomic environments but have similar promoter structures. Biochemistry. 25: 2041-7. PMID 3011075 DOI: 10.1021/bi00356a031  0.637
1984 Earley JM, Roebuck KA, Stumph WE. Three linked chicken Ul RNA genes have limited flanking DNA sequence homologies that reveal potential regulatory signals Nucleic Acids Research. 12: 7411-7421. PMID 6208531 DOI: 10.1093/Nar/12.19.7411  0.623
1983 Stumph WE, Baez M, Lawson GM, Tsai MJ, O'Malley BW. Higher-order structural determinants for expression of the ovalbumin gene family. Ciba Foundation Symposium. 98: 80-95. PMID 6557011 DOI: 10.1002/9780470720790.ch6  0.383
1983 Stumph WE, Baez M, Beattie WG, Tsai MJ, O'Malley BW. Characterization of deoxyribonucleic acid sequences at the 5' and 3' borders of the 100 kilobase pair ovalbumin gene domain. Biochemistry. 22: 306-15. PMID 6297544 DOI: 10.1021/Bi00271A012  0.307
1982 Stumph WE, Kristo P, Tsai MJ, O'Malley BW. A chicken middle-repetitive DNA sequence which shares homology with mammalian ubiquitous repeats. Nucleic Acids Research. 9: 5383-97. PMID 7301590 DOI: 10.1093/nar/9.20.5383  0.314
1981 Roop DR, Kristo P, Stumph WE, Tsai MJ, O'Malley BW. Structure and expression of a chicken gene coding for U1 RNA. Cell. 23: 671-80. PMID 6164492 DOI: 10.1016/0092-8674(81)90430-X  0.528
1980 Tsai SY, Roop DR, Stumph WE, Tsai MJ, O'Malley BW. Evidence that deoxyribonucleic acid sequences flanking the ovalbumin gene are not transcribed. Biochemistry. 19: 1755-61. PMID 6246933 DOI: 10.1021/Bi00550A005  0.573
1979 Stumph WE, Wu JR, Bonner J. Gene enrichment using antibodies to DNA/RNA hybrids: purification and mapping of Dictyostelium discoideum rDNA. Biochemistry. 17: 5791-8. PMID 728437 DOI: 10.1021/Bi00619A028  0.474
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