| Year |
Citation |
Score |
| 2023 |
Bahar I, Banerjee A, Mathew S, Naqvi M, Yilmaz S, Zachoropoulou M, Doruker P, Kumita J, Yang SH, Gur M, Itzhaki L, Gordon R. Influence of Point Mutations on PR65 Conformational Adaptability: Insights from Nanoaperture Optical Tweezer Experiments and Molecular Simulations. Research Square. PMID 38014259 DOI: 10.21203/rs.3.rs-3599809/v1 |
0.814 |
|
| 2023 |
Kaynak BT, Dahmani ZL, Doruker P, Banerjee A, Yang SH, Gordon R, Itzhaki LS, Bahar I. Cooperative mechanics of PR65 scaffold underlies the allosteric regulation of the phosphatase PP2A. Structure (London, England : 1993). PMID 36948205 DOI: 10.1016/j.str.2023.02.012 |
0.644 |
|
| 2022 |
Banerjee A, Saha S, Tvedt NC, Yang LW, Bahar I. Mutually beneficial confluence of structure-based modeling of protein dynamics and machine learning methods. Current Opinion in Structural Biology. 78: 102517. PMID 36587424 DOI: 10.1016/j.sbi.2022.102517 |
0.576 |
|
| 2022 |
Todd NK, Huang Y, Lee JY, Doruker P, Krieger JM, Salisbury R, MacDonald M, Bahar I, Thathiah A. GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-β generation. Cell Reports. 40: 111110. PMID 35858570 DOI: 10.1016/j.celrep.2022.111110 |
0.595 |
|
| 2022 |
Wingert B, Doruker P, Bahar I. Activation and Speciation Mechanisms in Class A GPCRs. Journal of Molecular Biology. 167690. PMID 35728652 DOI: 10.1016/j.jmb.2022.167690 |
0.67 |
|
| 2022 |
Acar O, Zhang S, Bahar I, Carvunis AR. Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow. Plos Computational Biology. 18: e1010181. PMID 35639793 DOI: 10.1371/journal.pcbi.1010181 |
0.708 |
|
| 2022 |
Kaynak BT, Krieger JM, Dudas B, Dahmani ZL, Costa MGS, Balog E, Scott AL, Doruker P, Perahia D, Bahar I. Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods. Frontiers in Molecular Biosciences. 9: 832847. PMID 35187088 DOI: 10.3389/fmolb.2022.832847 |
0.798 |
|
| 2022 |
Qiu X, Zhang Y, Martin-Rufino JD, Weng C, Hosseinzadeh S, Yang D, Pogson AN, Hein MY, Hoi Joseph Min K, Wang L, Grody EI, Shurtleff MJ, Yuan R, Xu S, Ma Y, ... ... Bahar I, et al. Mapping transcriptomic vector fields of single cells. Cell. PMID 35108499 DOI: 10.1016/j.cell.2021.12.045 |
0.482 |
|
| 2021 |
Sutkeviciute I, Lee JY, White AD, Maria CS, Peña KA, Savransky S, Doruker P, Li H, Lei S, Kaynak B, Tu C, Clark LJ, Sanker S, Gardella TJ, Chang W, ... Bahar I, et al. Precise druggability of the PTH type 1 receptor. Nature Chemical Biology. PMID 34949836 DOI: 10.1038/s41589-021-00929-w |
0.63 |
|
| 2021 |
Zhang Y, Zhang S, Xing J, Bahar I. Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis. The Journal of Chemical Physics. 154: 195102. PMID 34240914 DOI: 10.1063/5.0046710 |
0.765 |
|
| 2021 |
Kaynak BT, Zhang S, Bahar I, Doruker P. ClustENMD: Efficient sampling of biomolecular conformational space at atomic resolution. Bioinformatics (Oxford, England). PMID 34240100 DOI: 10.1093/bioinformatics/btab496 |
0.809 |
|
| 2021 |
Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I. ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python. Bioinformatics (Oxford, England). PMID 33822884 DOI: 10.1093/bioinformatics/btab187 |
0.802 |
|
| 2021 |
Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. HiDeF: identifying persistent structures in multiscale 'omics data. Genome Biology. 22: 21. PMID 33413539 DOI: 10.1186/s13059-020-02228-4 |
0.725 |
|
| 2020 |
Cheng MH, Zhang S, Porritt RA, Noval Rivas M, Paschold L, Willscher E, Binder M, Arditi M, Bahar I. Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation. Proceedings of the National Academy of Sciences of the United States of America. PMID 32989130 DOI: 10.1073/pnas.2010722117 |
0.707 |
|
| 2020 |
Zhang Y, Krieger J, Mikulska-Ruminska K, Kaynak B, Sorzano COS, Carazo JM, Xing J, Bahar I. State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps. Progress in Biophysics and Molecular Biology. PMID 32866476 DOI: 10.1016/J.Pbiomolbio.2020.08.006 |
0.618 |
|
| 2020 |
Kaynak BT, Bahar I, Doruker P. Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions. Computational and Structural Biotechnology Journal. 18: 1577-1586. PMID 32637054 DOI: 10.1016/J.Csbj.2020.06.020 |
0.692 |
|
| 2020 |
Clark LJ, Krieger J, White AD, Bondarenko V, Lei S, Fang F, Lee JY, Doruker P, Böttke T, Jean-Alphonse F, Tang P, Gardella TJ, Xiao K, Sutkeviciute I, Coin I, ... Bahar I, et al. Allosteric interactions in the parathyroid hormone GPCR-arrestin complex formation. Nature Chemical Biology. PMID 32632293 DOI: 10.1038/S41589-020-0567-0 |
0.647 |
|
| 2020 |
Krieger JM, Doruker P, Scott AL, Perahia D, Bahar I. Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods. Current Opinion in Structural Biology. 64: 34-41. PMID 32622329 DOI: 10.1016/J.Sbi.2020.05.013 |
0.804 |
|
| 2020 |
Zheng F, Zhang S, Churas C, Pratt D, Bahar I, Ideker T. Decoding of persistent multiscale structures in complex biological networks. Biorxiv : the Preprint Server For Biology. PMID 32587977 DOI: 10.1101/2020.06.16.151555 |
0.72 |
|
| 2020 |
Cheng MH, Zhang S, Porritt RA, Arditi M, Bahar I. An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations. Biorxiv : the Preprint Server For Biology. PMID 32511374 DOI: 10.1101/2020.05.21.109272 |
0.714 |
|
| 2020 |
Shi Q, Pei F, Silverman GA, Pak SC, Perlmutter DH, Liu B, Bahar I. Mechanisms of Action of Autophagy Modulators Dissected by Quantitative Systems Pharmacology Analysis. International Journal of Molecular Sciences. 21. PMID 32325894 DOI: 10.3390/Ijms21082855 |
0.373 |
|
| 2020 |
Thermozier S, Hou W, Zhang X, Shields D, Fisher R, Bayir H, Kagan V, Yu J, Liu B, Bahar I, Epperly MW, Wipf P, Wang H, Huq MS, Greenberger JS. Anti-Ferroptosis Drug Enhances Total-Body Irradiation Mitigation by Drugs that Block Apoptosis and Necroptosis. Radiation Research. PMID 32134361 DOI: 10.1667/Rr15486.1 |
0.332 |
|
| 2020 |
Li H, Doruker P, Hu G, Bahar I. Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding. Biophysical Journal. PMID 32130874 DOI: 10.1016/J.Bpj.2020.01.046 |
0.686 |
|
| 2020 |
Ponzoni L, Peñaherrera DA, Oltvai ZN, Bahar I. Rhapsody: Predicting the pathogenicity of human missense variants. Bioinformatics (Oxford, England). PMID 32101277 DOI: 10.1093/Bioinformatics/Btaa127 |
0.328 |
|
| 2020 |
Kapralov AA, Yang Q, Dar HH, Tyurina YY, Anthonymuthu TS, Kim R, St Croix CM, Mikulska-Ruminska K, Liu B, Shrivastava IH, Tyurin VA, Ting HC, Wu YL, Gao Y, Shurin GV, ... ... Bahar I, et al. Redox lipid reprogramming commands susceptibility of macrophages and microglia to ferroptotic death. Nature Chemical Biology. 16: 278-290. PMID 32080625 DOI: 10.1038/S41589-019-0462-8 |
0.319 |
|
| 2019 |
Zhang S, Chen F, Bahar I. Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation. Nucleic Acids Research. PMID 31828312 DOI: 10.1093/Nar/Gkz1102 |
0.74 |
|
| 2019 |
Zhang Y, Doruker P, Kaynak B, Zhang S, Krieger J, Li H, Bahar I. Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior. Current Opinion in Structural Biology. 62: 14-21. PMID 31785465 DOI: 10.1016/J.Sbi.2019.11.002 |
0.812 |
|
| 2019 |
Lee JY, Krieger JM, Li H, Bahar I. Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations. Protein Science : a Publication of the Protein Society. PMID 31576621 DOI: 10.1002/Pro.3732 |
0.35 |
|
| 2019 |
Thermozier S, Zhang X, Hou W, Fisher R, Epperly MW, Liu B, Bahar I, Wang H, Greenberger JS. Radioresistance of Serpinb3a-/- Mice and Derived Hematopoietic and Marrow Stromal Cell Lines. Radiation Research. PMID 31295086 DOI: 10.1667/Rr15379.1 |
0.316 |
|
| 2019 |
Cheng MH, Bahar I. Monoamine transporters: structure, intrinsic dynamics and allosteric regulation. Nature Structural & Molecular Biology. 26: 545-556. PMID 31270469 DOI: 10.1038/S41594-019-0253-7 |
0.333 |
|
| 2019 |
Cheng MH, Ponzoni L, Sorkina T, Lee JY, Zhang S, Sorkin A, Bahar I. Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations. Neuropharmacology. 107676. PMID 31228486 DOI: 10.1016/J.Neuropharm.2019.107676 |
0.745 |
|
| 2019 |
Zhou Z, Feng Z, Hu D, Yang P, Gur M, Bahar I, Cristofanilli M, Gradishar WJ, Xie XQ, Wan Y. A novel small-molecule antagonizes PRMT5-mediated KLF4 methylation for targeted therapy. Ebiomedicine. PMID 31101597 DOI: 10.1016/J.Ebiom.2019.05.011 |
0.759 |
|
| 2019 |
Zhang S, Li H, Krieger JM, Bahar I. Shared signature dynamics tempered by local fluctuations enables fold adaptability and specificity. Molecular Biology and Evolution. PMID 31028708 DOI: 10.1093/Molbev/Msz102 |
0.774 |
|
| 2019 |
Pei F, Li H, Liu B, Bahar I. Quantitative Systems Pharmacological Analysis of Drugs of Abuse Reveals the Pleiotropy of Their Targets and the Effector Role of mTORC1. Frontiers in Pharmacology. 10: 191. PMID 30906261 DOI: 10.3389/Fphar.2019.00191 |
0.358 |
|
| 2019 |
Mikulska-Ruminska K, Shrivastava IH, Krieger J, Zhang S, Li H, Bayir H, Wenzel SE, VanDemark AP, Kagan VE, Bahar I. Characterization of differential dynamics, specificity, and allostery of lipoxygenase family members. Journal of Chemical Information and Modeling. PMID 30762363 DOI: 10.1021/Acs.Jcim.9B00006 |
0.753 |
|
| 2019 |
Sorzano COS, Jiménez A, Mota J, Vilas JL, Maluenda D, Martínez M, Ramírez-Aportela E, Majtner T, Segura J, Sánchez-García R, Rancel Y, Del Caño L, Conesa P, Melero R, Jonic S, ... ... Bahar I, et al. Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy. Acta Crystallographica. Section F, Structural Biology Communications. 75: 19-32. PMID 30605122 DOI: 10.1107/S2053230X18015108 |
0.32 |
|
| 2019 |
Young Lee J, Krieger J, Herguedas B, García-Nafría J, Dutta A, Shaikh SA, Greger IH, Bahar I. A Ligand-Binding Site in the Glua3 AMPA Receptor N-Terminal Domain Observed in Druggability Simulations and X-Ray Crystallography Biophysical Journal. 116: 489a. DOI: 10.1016/J.Bpj.2018.11.2639 |
0.518 |
|
| 2018 |
Wang KZQ, Steer E, Otero PA, Bateman NW, Cheng MH, Scott AL, Wu C, Bahar I, Shih YT, Hsueh YP, Chu CT. PINK1 Interacts with VCP/p97 and Activates PKA to Promote NSFL1C/p47 Phosphorylation and Dendritic Arborization in Neurons. Eneuro. 5. PMID 30783609 DOI: 10.1523/ENEURO.0466-18.2018 |
0.54 |
|
| 2018 |
Lee JY, Krieger J, Herguedas B, García-Nafría J, Dutta A, Shaikh SA, Greger IH, Bahar I. Druggability Simulations and X-Ray Crystallography Reveal a Ligand-Binding Site in the GluA3 AMPA Receptor N-Terminal Domain. Structure (London, England : 1993). PMID 30528594 DOI: 10.1016/J.Str.2018.10.017 |
0.565 |
|
| 2018 |
Ponzoni L, Zhang S, Cheng MH, Bahar I. Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 373. PMID 29735731 DOI: 10.1098/Rstb.2017.0177 |
0.776 |
|
| 2018 |
Ponzoni L, Bahar I. Structural dynamics is a determinant of the functional significance of missense variants. Proceedings of the National Academy of Sciences of the United States of America. 115: 4164-4169. PMID 29610305 DOI: 10.1073/Pnas.1715896115 |
0.355 |
|
| 2018 |
Krieger J, Lee JY, Greger IH, Bahar I. Activation and Desensitization of Ionotropic Glutamate Receptors by Selectively Triggering Pre-existing Motions. Neuroscience Letters. PMID 29481851 DOI: 10.1016/J.Neulet.2018.02.050 |
0.35 |
|
| 2018 |
Young Lee J, Feng Z, Xie X(, Bahar I. Molecular Basis for the Functionality of γ-Secretase Inferred From Structure-Based Modeling and Druggability Simulations Biophysical Journal. 114: 232a. DOI: 10.1016/J.Bpj.2017.11.1289 |
0.321 |
|
| 2017 |
Lee JY, Feng Z, Xie XQ, Bahar I. Allosteric Modulation of Intact γ-Secretase Structural Dynamics. Biophysical Journal. 113: 2634-2649. PMID 29262358 DOI: 10.1016/J.Bpj.2017.10.012 |
0.381 |
|
| 2017 |
Liu B, Oltvai ZN, Bayır H, Silverman GA, Pak SC, Perlmutter DH, Bahar I. Quantitative assessment of cell fate decision between autophagy and apoptosis. Scientific Reports. 7: 17605. PMID 29242632 DOI: 10.1038/S41598-017-18001-W |
0.363 |
|
| 2017 |
Cheng MH, Kaya C, Bahar I. A Quantitative Assessment of the Energetics of Dopamine Translocation by Human Dopamine Transporter. The Journal of Physical Chemistry. B. PMID 29232131 DOI: 10.1021/Acs.Jpcb.7B10340 |
0.35 |
|
| 2017 |
Steinman J, Epperly M, Hou W, Willis J, Wang H, Fisher R, Liu B, Bahar I, McCaw T, Kagan V, Bayir H, Yu J, Wipf P, Li S, Huq MS, et al. Improved Total-Body Irradiation Survival by Delivery of Two Radiation Mitigators that Target Distinct Cell Death Pathways. Radiation Research. PMID 29140165 DOI: 10.1667/Rr14787.1 |
0.336 |
|
| 2017 |
Mikulska-Ruminska K, Kulik AJ, Benadiba C, Bahar I, Dietler G, Nowak W. Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD. Scientific Reports. 7: 8852. PMID 28821864 DOI: 10.1038/S41598-017-09482-W |
0.328 |
|
| 2017 |
Li H, Sharma N, General IJ, Schreiber G, Bahar I. Dynamic Modulation of Binding Affinity as a Mechanism for Regulating Interferon Signaling. Journal of Molecular Biology. PMID 28648616 DOI: 10.1016/J.Jmb.2017.06.011 |
0.767 |
|
| 2017 |
Cheng MH, Garcia-Olivares J, Wasserman S, DiPietro J, Bahar I. Allosteric Modulation of Human Dopamine Transporter Activity under Conditions Promoting its Dimerization. The Journal of Biological Chemistry. PMID 28584050 DOI: 10.1074/Jbc.M116.763565 |
0.368 |
|
| 2017 |
Cheng MH, Torres-Salazar D, Gonzalez-Suarez AD, Amara SG, Bahar I. Substrate transport and anion permeation proceed through distinct pathways in glutamate transporters. Elife. 6. PMID 28569666 DOI: 10.7554/Elife.25850 |
0.318 |
|
| 2017 |
Li H, Chang YY, Lee JY, Bahar I, Yang LW. DynOmics: dynamics of structural proteome and beyond. Nucleic Acids Research. PMID 28472330 DOI: 10.1093/Nar/Gkx385 |
0.61 |
|
| 2017 |
Sauerwald N, Zhang S, Kingsford C, Bahar I. Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings. Nucleic Acids Research. PMID 28334818 DOI: 10.1093/Nar/Gkx172 |
0.747 |
|
| 2017 |
Gur M, Cheng MH, Zomot E, Bahar I. Effect of Dimerization on the Dynamics of Neurotransmitter: Sodium Symporters. The Journal of Physical Chemistry. B. PMID 28118712 DOI: 10.1021/Acs.Jpcb.6B09876 |
0.801 |
|
| 2017 |
Mikulska-Ruminska K, Kulik AJ, Kaya C, BenAdiba C, Dietler G, Nowak W, Bahar I. MechStiff : A New Tool for Evaluating Stress-Induced Dynamics and Application to Cell Adhesion Proteins Biophysical Journal. 112: 45a-46a. DOI: 10.1016/J.Bpj.2016.11.286 |
0.387 |
|
| 2017 |
Gur M, Cheng MH, Zomot E, Bahar I. Importance of Dimerization in Facilitating the Functional Dynamics of Neurotransmitter: Sodium Symporters Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.2736 |
0.789 |
|
| 2016 |
Kagan VE, Mao G, Qu F, Angeli JP, Doll S, Croix CS, Dar HH, Liu B, Tyurin VA, Ritov VB, Kapralov AA, Amoscato AA, Jiang J, Anthonymuthu T, Mohammadyani D, ... ... Bahar I, et al. Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis. Nature Chemical Biology. PMID 27842066 DOI: 10.1038/Nchembio.2238 |
0.322 |
|
| 2016 |
Kurkcuoglu Z, Bahar I, Doruker P. ClustENM: ENM-based sampling of essential conformational space at full atomic resolution. Journal of Chemical Theory and Computation. PMID 27494296 DOI: 10.1021/Acs.Jctc.6B00319 |
0.806 |
|
| 2016 |
Liu B, Liu Q, Yang L, Palaniappan SK, Bahar I, Thiagarajan PS, Ding JL. Innate immune memory and homeostasis may be conferred through crosstalk between the TLR3 and TLR7 pathways. Science Signaling. 9: ra70. PMID 27405980 DOI: 10.1126/Scisignal.Aac9340 |
0.326 |
|
| 2016 |
Jernigan RL, Bahar I, Covell DG, Atilgan AR, Erman B, Flatow DT. Relating the Structure of HIV-1 Reverse Transcriptase to Its Processing Step. Journal of Biomolecular Structure & Dynamics. 49-55. PMID 22607406 DOI: 10.1080/07391102.2000.10506603 |
0.725 |
|
| 2016 |
Lee JY, Dutta A, Krieger J, Garcia-Nafria J, Greger I, Bahar I. Global Dynamics of Intact AMPA and NMDA Receptors using Elastic Network Models Biophysical Journal. 110: 382a. DOI: 10.1016/J.Bpj.2015.11.2066 |
0.581 |
|
| 2015 |
Gur M, Zomot E, Cheng MH, Bahar I. Energy landscape of LeuT from molecular simulations. The Journal of Chemical Physics. 143: 243134. PMID 26723619 DOI: 10.1063/1.4936133 |
0.811 |
|
| 2015 |
Li H, Chang YY, Yang LW, Bahar I. iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics. Nucleic Acids Research. PMID 26582920 DOI: 10.1093/Nar/Gkv1236 |
0.62 |
|
| 2015 |
Hu D, Gur M, Zhou Z, Gamper A, Hung MC, Fujita N, Lan L, Bahar I, Wan Y. Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis. Nature Communications. 6: 8419. PMID 26420673 DOI: 10.1038/Ncomms9419 |
0.774 |
|
| 2015 |
Keskin O, Dyson HJ, Bahar I. Biomolecular Systems Interactions, Dynamics, and Allostery: Reflections and New Directions. Biophysical Journal. 109: E01-2. PMID 26377787 DOI: 10.1016/J.Bpj.2015.08.005 |
0.561 |
|
| 2015 |
Dutta A, Krieger J, Lee JY, Garcia-Nafria J, Greger IH, Bahar I. Cooperative Dynamics of Intact AMPA and NMDA Glutamate Receptors: Similarities and Subfamily-Specific Differences. Structure (London, England : 1993). 23: 1692-704. PMID 26256538 DOI: 10.1016/J.Str.2015.07.002 |
0.563 |
|
| 2015 |
Krieger J, Bahar I, Greger IH. Structure, Dynamics, and Allosteric Potential of Ionotropic Glutamate Receptor N-Terminal Domains. Biophysical Journal. 109: 1136-48. PMID 26255587 DOI: 10.1016/J.Bpj.2015.06.061 |
0.319 |
|
| 2015 |
Haliloglu T, Bahar I. Adaptability of protein structures to enable functional interactions and evolutionary implications. Current Opinion in Structural Biology. 35: 17-23. PMID 26254902 DOI: 10.1016/J.Sbi.2015.07.007 |
0.682 |
|
| 2015 |
Bahar I, Cheng MH, Lee JY, Kaya C, Zhang S. Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions. Biophysical Journal. PMID 26143655 DOI: 10.1016/J.Bpj.2015.06.004 |
0.786 |
|
| 2015 |
Bakan A, Kapralov AA, Bayir H, Hu F, Kagan VE, Bahar I. Inhibition of Peroxidase Activity of Cytochrome c: De Novo Compound Discovery and Validation. Molecular Pharmacology. 88: 421-7. PMID 26078313 DOI: 10.1124/Mol.115.097816 |
0.559 |
|
| 2015 |
Mao W, Kaya C, Dutta A, Horovitz A, Bahar I. Comparative study of the effectiveness and limitations of current methods for detecting sequence coevolution. Bioinformatics (Oxford, England). 31: 1929-37. PMID 25697822 DOI: 10.1093/Bioinformatics/Btv103 |
0.52 |
|
| 2015 |
Eyal E, Lum G, Bahar I. The anisotropic network model web server at 2015 (ANM 2.0). Bioinformatics (Oxford, England). 31: 1487-9. PMID 25568280 DOI: 10.1093/Bioinformatics/Btu847 |
0.369 |
|
| 2015 |
Zomot E, Gur M, Bahar I. Microseconds simulations reveal a new sodium-binding site and the mechanism of sodium-coupled substrate uptake by LeuT. The Journal of Biological Chemistry. 290: 544-55. PMID 25381247 DOI: 10.1074/Jbc.M114.617555 |
0.781 |
|
| 2015 |
Kaya C, Liu B, Faeder JR, Bahar I. Unified Model of Synaptic Transmission Biophysical Journal. 108: 155a. DOI: 10.1016/J.Bpj.2014.11.852 |
0.354 |
|
| 2015 |
Cheng MH, Bahar I. Visualization of Molecular Events from Dopamine-Binding to -Release by Human Dopamine Transporter Biophysical Journal. 108: 462a. DOI: 10.1016/J.Bpj.2014.11.2520 |
0.306 |
|
| 2014 |
Cheng MH, Bahar I. Complete mapping of substrate translocation highlights the role of LeuT N-terminal segment in regulating transport cycle. Plos Computational Biology. 10: e1003879. PMID 25299050 DOI: 10.1371/Journal.Pcbi.1003879 |
0.337 |
|
| 2014 |
Liu B, Bhatt D, Oltvai ZN, Greenberger JS, Bahar I. Significance of p53 dynamics in regulating apoptosis in response to ionizing radiation, and polypharmacological strategies. Scientific Reports. 4: 6245. PMID 25175563 DOI: 10.1038/Srep06245 |
0.353 |
|
| 2014 |
LaRusch J, Jung J, General IJ, Lewis MD, Park HW, Brand RE, Gelrud A, Anderson MA, Banks PA, Conwell D, Lawrence C, Romagnuolo J, Baillie J, Alkaade S, Cote G, ... ... Bahar I, et al. Mechanisms of CFTR functional variants that impair regulated bicarbonate permeation and increase risk for pancreatitis but not for cystic fibrosis. Plos Genetics. 10: e1004376. PMID 25033378 DOI: 10.1371/Journal.Pgen.1004376 |
0.742 |
|
| 2014 |
Bahar I. Coupling between neurotransmitter translocation and protonation state of a titratable residue during Na ⁺-coupled transport. Biophysical Journal. 106: 2547-8. PMID 24940770 DOI: 10.1016/J.Bpj.2014.05.011 |
0.333 |
|
| 2014 |
Korotchenko VN, Saydmohammed M, Vollmer LL, Bakan A, Sheetz K, Debiec KT, Greene KA, Agliori CS, Bahar I, Day BW, Vogt A, Tsang M. In vivo structure-activity relationship studies support allosteric targeting of a dual specificity phosphatase. Chembiochem : a European Journal of Chemical Biology. 15: 1436-45. PMID 24909879 DOI: 10.1002/Cbic.201402000 |
0.587 |
|
| 2014 |
Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I. Evol and ProDy for bridging protein sequence evolution and structural dynamics. Bioinformatics (Oxford, England). 30: 2681-3. PMID 24849577 DOI: 10.1093/Bioinformatics/Btu336 |
0.728 |
|
| 2014 |
General IJ, Liu Y, Blackburn ME, Mao W, Gierasch LM, Bahar I. ATPase subdomain IA is a mediator of interdomain allostery in Hsp70 molecular chaperones. Plos Computational Biology. 10: e1003624. PMID 24831085 DOI: 10.1371/Journal.Pcbi.1003624 |
0.777 |
|
| 2014 |
Das A, Gur M, Cheng MH, Jo S, Bahar I, Roux B. Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model. Plos Computational Biology. 10: e1003521. PMID 24699246 DOI: 10.1371/Journal.Pcbi.1003521 |
0.806 |
|
| 2014 |
Jiang J, Bakan A, Kapralov AA, Silva KI, Huang Z, Amoscato AA, Peterson J, Garapati VK, Saxena S, Bayir H, Atkinson J, Bahar I, Kagan VE. Designing inhibitors of cytochrome c/cardiolipin peroxidase complexes: mitochondria-targeted imidazole-substituted fatty acids. Free Radical Biology & Medicine. 71: 221-30. PMID 24631490 DOI: 10.1016/J.Freeradbiomed.2014.02.029 |
0.582 |
|
| 2014 |
Lui VW, Peyser ND, Ng PK, Hritz J, Zeng Y, Lu Y, Li H, Wang L, Gilbert BR, General IJ, Bahar I, Ju Z, Wang Z, Pendleton KP, Xiao X, et al. Frequent mutation of receptor protein tyrosine phosphatases provides a mechanism for STAT3 hyperactivation in head and neck cancer. Proceedings of the National Academy of Sciences of the United States of America. 111: 1114-9. PMID 24395800 DOI: 10.1073/Pnas.1319551111 |
0.744 |
|
| 2014 |
Vollmer L, Vernetti L, Bakan A, Korotchenko V, Bahar I, Day B, Tsang M, Vogt A. Abstract 745: A non-redox reactive allosteric inhibitor of MAPK phosphatases with selective toxicity to human cancer cells Cancer Research. 74: 745-745. DOI: 10.1158/1538-7445.Am2014-745 |
0.576 |
|
| 2014 |
Cheng MH, Bahar I. Complete Mapping of Substrate Translocation Implicates the Secondary Binding Site and Highlights the Significance of LeuT N-Terminal Segment in Regulating Transport Cycle Biophysical Journal. 106: 364a. DOI: 10.1016/J.Bpj.2013.11.2066 |
0.356 |
|
| 2013 |
Gur M, Madura JD, Bahar I. Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase. Biophysical Journal. 105: 1643-52. PMID 24094405 DOI: 10.1016/J.Bpj.2013.07.058 |
0.814 |
|
| 2013 |
Gur M, Zomot E, Bahar I. Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions. The Journal of Chemical Physics. 139: 121912. PMID 24089724 DOI: 10.1063/1.4816375 |
0.821 |
|
| 2013 |
Cheng MH, Bahar I. Coupled global and local changes direct substrate translocation by neurotransmitter-sodium symporter ortholog LeuT. Biophysical Journal. 105: 630-9. PMID 23931311 DOI: 10.1016/J.Bpj.2013.06.032 |
0.322 |
|
| 2013 |
Zomot E, Bahar I. Intracellular gating in an inward-facing state of aspartate transporter Glt(Ph) is regulated by the movements of the helical hairpin HP2. The Journal of Biological Chemistry. 288: 8231-7. PMID 23386619 DOI: 10.1074/Jbc.M112.438432 |
0.337 |
|
| 2013 |
Das A, Gur M, Bahar I, Roux B. A Simple Coarse-Grained Model to Map the Transition Pathway Between Two Stable Conformations using the Anisotropic Elastic Network Model Biophysical Journal. 104: 35a-36a. DOI: 10.1016/J.Bpj.2012.11.235 |
0.804 |
|
| 2013 |
Gur M, Madura J, Bahar I. Global Transitions or Proteins Explored by a Multiscale Hybrid Methodology: Application to Dopamine Transporter Biophysical Journal. 104: 226a-227a. DOI: 10.1016/J.Bpj.2012.11.1279 |
0.825 |
|
| 2013 |
Dutta A, Bakan A, Bahar I. Druggability of Ionotropic Glutamate Receptor N-Terminal Domains Biophysical Journal. 104: 226a. DOI: 10.1016/J.Bpj.2012.11.1274 |
0.701 |
|
| 2013 |
General I, Bahar I. Investigating the Role of Interfacial Residues in Mediating the Interdomain Allostery of Hsp70 Biophysical Journal. 104: 212a. DOI: 10.1016/J.Bpj.2012.11.1198 |
0.784 |
|
| 2012 |
Perez A, Yang Z, Bahar I, Dill KA, MacCallum JL. FlexE: Using elastic network models to compare models of protein structure. Journal of Chemical Theory and Computation. 8: 3985-3991. PMID 25530735 DOI: 10.1021/Ct300148F |
0.375 |
|
| 2012 |
Kurkcuoglu Z, Bakan A, Kocaman D, Bahar I, Doruker P. Coupling between catalytic loop motions and enzyme global dynamics. Plos Computational Biology. 8: e1002705. PMID 23028297 DOI: 10.1371/Journal.Pcbi.1002705 |
0.803 |
|
| 2012 |
Isin B, Tirupula KC, Oltvai ZN, Klein-Seetharaman J, Bahar I. Identification of motions in membrane proteins by elastic network models and their experimental validation. Methods in Molecular Biology (Clifton, N.J.). 914: 285-317. PMID 22976035 DOI: 10.1007/978-1-62703-023-6_17 |
0.438 |
|
| 2012 |
Dutta A, Shrivastava IH, Sukumaran M, Greger IH, Bahar I. Comparative dynamics of NMDA- and AMPA-glutamate receptor N-terminal domains. Structure (London, England : 1993). 20: 1838-49. PMID 22959625 DOI: 10.1016/J.Str.2012.08.012 |
0.574 |
|
| 2012 |
Zomot E, Bahar I. A conformational switch in a partially unwound helix selectively determines the pathway for substrate release from the carnitine/γ-butyrobetaine antiporter CaiT. The Journal of Biological Chemistry. 287: 31823-32. PMID 22843728 DOI: 10.1074/Jbc.M112.397364 |
0.345 |
|
| 2012 |
Bakan A, Nevins N, Lakdawala AS, Bahar I. Druggability Assessment of Allosteric Proteins by Dynamics Simulations in the Presence of Probe Molecules. Journal of Chemical Theory and Computation. 8: 2435-2447. PMID 22798729 DOI: 10.1016/J.Bpj.2012.11.3081 |
0.622 |
|
| 2012 |
Liberles DA, Teichmann SA, Bahar I, Bastolla U, Bloom J, Bornberg-Bauer E, Colwell LJ, de Koning AP, Dokholyan NV, Echave J, Elofsson A, Gerloff DL, Goldstein RA, Grahnen JA, Holder MT, et al. The interface of protein structure, protein biophysics, and molecular evolution. Protein Science : a Publication of the Protein Society. 21: 769-85. PMID 22528593 DOI: 10.1002/Pro.2071 |
0.364 |
|
| 2012 |
Lezon TR, Bahar I. Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh. Biophysical Journal. 102: 1331-40. PMID 22455916 DOI: 10.1016/J.Bpj.2012.02.028 |
0.373 |
|
| 2012 |
Liu Y, Bahar I. Sequence evolution correlates with structural dynamics. Molecular Biology and Evolution. 29: 2253-63. PMID 22427707 DOI: 10.1093/Molbev/Mss097 |
0.427 |
|
| 2012 |
Liu L, Gronenborn AM, Bahar I. Longer simulations sample larger subspaces of conformations while maintaining robust mechanisms of motion Proteins: Structure, Function and Bioinformatics. 80: 616-625. PMID 22105881 DOI: 10.1002/Prot.23225 |
0.385 |
|
| 2012 |
Gur M, Madura J, Bahar I. Transition Pathways of Proteins Explored by Combining Molecular Dynamics Simulations and Monte Carlo Sampling of Collective Modes Biophysical Journal. 102: 450a. DOI: 10.1016/J.Bpj.2011.11.2467 |
0.816 |
|
| 2011 |
Eyal E, Dutta A, Bahar I. Cooperative dynamics of proteins unraveled by network models. Wiley Interdisciplinary Reviews. Computational Molecular Science. 1: 426-439. PMID 32148561 DOI: 10.1002/Wcms.44 |
0.608 |
|
| 2011 |
Marcos E, Crehuet R, Bahar I. Changes in dynamics upon oligomerization regulate substrate binding and allostery in amino acid kinase family members. Plos Computational Biology. 7: e1002201. PMID 21980279 DOI: 10.1371/Journal.Pcbi.1002201 |
0.42 |
|
| 2011 |
Jiang J, Shrivastava IH, Watts SD, Bahar I, Amara SG. Large collective motions regulate the functional properties of glutamate transporter trimers. Proceedings of the National Academy of Sciences of the United States of America. 108: 15141-6. PMID 21876140 DOI: 10.1073/Pnas.1112216108 |
0.358 |
|
| 2011 |
Meireles L, Gur M, Bakan A, Bahar I. Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins. Protein Science : a Publication of the Protein Society. 20: 1645-58. PMID 21826755 DOI: 10.1002/Pro.711 |
0.798 |
|
| 2011 |
Zomot E, Bahar I. Protonation of glutamate 208 induces the release of agmatine in an outward-facing conformation of an arginine/agmatine antiporter. The Journal of Biological Chemistry. 286: 19693-701. PMID 21487006 DOI: 10.1074/Jbc.M110.202085 |
0.352 |
|
| 2011 |
Bakan A, Meireles LM, Bahar I. ProDy: protein dynamics inferred from theory and experiments. Bioinformatics (Oxford, England). 27: 1575-7. PMID 21471012 DOI: 10.1093/Bioinformatics/Btr168 |
0.809 |
|
| 2011 |
Mustata G, Li M, Zevola N, Bakan A, Zhang L, Epperly M, Greenberger JS, Yu J, Bahar I. Development of small-molecule PUMA inhibitors for mitigating radiation-induced cell death. Current Topics in Medicinal Chemistry. 11: 281-90. PMID 21320058 DOI: 10.2174/156802611794072641 |
0.58 |
|
| 2011 |
Sukumaran M, Rossmann M, Shrivastava I, Dutta A, Bahar I, Greger IH. Dynamics and allosteric potential of the AMPA receptor N-terminal domain. The Embo Journal. 30: 972-82. PMID 21317871 DOI: 10.1038/Emboj.2011.17 |
0.571 |
|
| 2011 |
DeChancie J, Shrivastava IH, Bahar I. The mechanism of substrate release by the aspartate transporter GltPh: insights from simulations. Molecular Biosystems. 7: 832-42. PMID 21161089 DOI: 10.1039/C0Mb00175A |
0.335 |
|
| 2011 |
Bakan A, Bahar I. Computational generation inhibitor-bound conformers of p38 MAP kinase and comparison with experiments. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 181-92. PMID 21121046 |
0.612 |
|
| 2011 |
Burger V, Bahar I, Chennubhotla C. A hierarchical elastic network model for unsupervised electron density map segmentation F1000research. 2. DOI: 10.7490/F1000Research.807.1 |
0.336 |
|
| 2011 |
McLaughlin J, Rella J, Bakan A, Kong L, Zhu L, Frederick D, Yende S, Ferrell R, Bahar I, Shapiro S, Angus D, Kaynar A. Impact of pro-domain stability of matrix metalloproteinase-8 on the outcome of sepsis Critical Care. 15: P278. DOI: 10.1186/Cc9698 |
0.534 |
|
| 2011 |
Zomot E, Bakan A, Shrivastava IH, De Chancie J, Lezon TR, Bahar I. Sodium-coupled secondary transporters: Insights from structure-based computations Molecular Machines. 199-230. DOI: 10.1142/9789814343466_0011 |
0.539 |
|
| 2011 |
Liu L, Gronenborn AM, Bahar I. The Short-Time Dynamics of Proteins Near Native State Conditions Signal to Robust Mechanisms Accessible at Long Times Biophysical Journal. 100: 535a. DOI: 10.1016/J.Bpj.2010.12.3120 |
0.402 |
|
| 2011 |
Burger V, Bahar I, Chennubhotla C. Hierarchical Elastic Network Modeling of cryo-EM Data Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.3117 |
0.361 |
|
| 2011 |
Liu L, Byeon I, Bahar I, Gronenborn AM. Investigating Domain-Swapped Proteins by 19F NMR Biophysical Journal. 100: 397a-398a. DOI: 10.1016/J.Bpj.2010.12.2361 |
0.359 |
|
| 2011 |
Shrivastava I, DeChancie J, Bahar I. Insights into the Mechanism of Release of Substrate in the Inward Facing Glutamate Transporter from Molecular Dynamics Simulations Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.1553 |
0.339 |
|
| 2010 |
Liu Y, Gierasch LM, Bahar I. Role of Hsp70 ATPase domain intrinsic dynamics and sequence evolution in enabling its functional interactions with NEFs. Plos Computational Biology. 6. PMID 20862304 DOI: 10.1371/Journal.Pcbi.1000931 |
0.339 |
|
| 2010 |
Dutta A, Bahar I. Metal-binding sites are designed to achieve optimal mechanical and signaling properties. Structure (London, England : 1993). 18: 1140-8. PMID 20826340 DOI: 10.1016/J.Str.2010.06.013 |
0.557 |
|
| 2010 |
Lezon TR, Bahar I. Using entropy maximization to understand the determinants of structural dynamics beyond native contact topology. Plos Computational Biology. 6: e1000816. PMID 20585542 DOI: 10.1371/Journal.Pcbi.1000816 |
0.461 |
|
| 2010 |
Marcos E, Crehuet R, Bahar I. On the conservation of the slow conformational dynamics within the amino acid kinase family: NAGK the paradigm. Plos Computational Biology. 6: e1000738. PMID 20386738 DOI: 10.1371/Journal.Pcbi.1000738 |
0.413 |
|
| 2010 |
Zomot E, Bahar I. The sodium/galactose symporter crystal structure is a dynamic, not so occluded state. Molecular Biosystems. 6: 1040-6. PMID 20358053 DOI: 10.1039/B927492H |
0.362 |
|
| 2010 |
Bahar I, Lezon TR, Yang LW, Eyal E. Global dynamics of proteins: bridging between structure and function. Annual Review of Biophysics. 39: 23-42. PMID 20192781 DOI: 10.1146/Annurev.Biophys.093008.131258 |
0.639 |
|
| 2010 |
Bahar I, Lezon TR, Bakan A, Shrivastava IH. Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins. Chemical Reviews. 110: 1463-97. PMID 19785456 DOI: 10.1021/Cr900095E |
0.703 |
|
| 2010 |
Shrivastava I, Jiang J, Amara SG, Bahar I. Application of Gaussian Network Model to Elucidate Functional Modes of Motion in a Glutamate Transporter Biophysical Journal. 98: 632a. DOI: 10.1016/J.Bpj.2009.12.3458 |
0.359 |
|
| 2010 |
Dutta A, Bahar I. Metal-Binding Residues are Distinguished by their Lower Mobilities and Efficient Signal Propagation Properties Biophysical Journal. 98: 442a. DOI: 10.1016/J.Bpj.2009.12.2403 |
0.599 |
|
| 2009 |
Lezon TR, Sali A, Bahar I. Global motions of the nuclear pore complex: insights from elastic network models. Plos Computational Biology. 5: e1000496. PMID 19730674 DOI: 10.1371/Journal.Pcbi.1000496 |
0.386 |
|
| 2009 |
Bakan A, Bahar I. The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding. Proceedings of the National Academy of Sciences of the United States of America. 106: 14349-54. PMID 19706521 DOI: 10.1073/Pnas.0904214106 |
0.659 |
|
| 2009 |
Liu L, Koharudin LMI, Gronenborn AM, Bahar I. A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X-ray, and computations Proteins: Structure, Function and Bioinformatics. 77: 927-939. PMID 19688820 DOI: 10.1002/Prot.22518 |
0.401 |
|
| 2009 |
Molina G, Vogt A, Bakan A, Dai W, Queiroz de Oliveira P, Znosko W, Smithgall TE, Bahar I, Lazo JS, Day BW, Tsang M. Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages. Nature Chemical Biology. 5: 680-7. PMID 19578332 DOI: 10.1038/Nchembio.190 |
0.577 |
|
| 2009 |
Yang Z, Bahar I, Widom M. Vibrational dynamics of icosahedrally symmetric biomolecular assemblies compared with predictions based on continuum elasticity. Biophysical Journal. 96: 4438-48. PMID 19486668 DOI: 10.1016/J.Bpj.2009.03.016 |
0.382 |
|
| 2009 |
Yang Z, Májek P, Bahar I. Allosteric transitions of supramolecular systems explored by network models: application to chaperonin GroEL. Plos Computational Biology. 5: e1000360. PMID 19381265 DOI: 10.1371/Journal.Pcbi.1000360 |
0.391 |
|
| 2009 |
Gu Y, Shrivastava IH, Amara SG, Bahar I. Molecular simulations elucidate the substrate translocation pathway in a glutamate transporter. Proceedings of the National Academy of Sciences of the United States of America. 106: 2589-94. PMID 19202063 DOI: 10.1073/Pnas.0812299106 |
0.327 |
|
| 2009 |
Yang LW, Eyal E, Bahar I, Kitao A. Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics. Bioinformatics (Oxford, England). 25: 606-14. PMID 19147661 DOI: 10.1093/Bioinformatics/Btp023 |
0.597 |
|
| 2009 |
Liu L, Koharudin LM, Gronenborn AM, Bahar I. A Detailed Comparison Between The NMR Ensemble, Two X-ray Models And Computational Predictions Of Motions For A Designed Sugar Binding Protein Biophysical Journal. 96: 323a. DOI: 10.1016/J.Bpj.2008.12.1623 |
0.443 |
|
| 2009 |
Lezon TR, Bahar I. Reality's A Drag: Accounting For Friction In Simple Protein Models Biophysical Journal. 96: 323a. DOI: 10.1016/J.Bpj.2008.12.1621 |
0.394 |
|
| 2009 |
Gu Y, Shrivastava IH, Amara SG, Bahar I. Substrate translocation pathway in glutamate transporter: Insights from molecular simulations Biophysical Journal. 96: 39a. DOI: 10.1016/J.Bpj.2008.12.098 |
0.328 |
|
| 2008 |
Bakan A, Lazo JS, Wipf P, Brummond KM, Bahar I. Toward a molecular understanding of the interaction of dual specificity phosphatases with substrates: insights from structure-based modeling and high throughput screening. Current Medicinal Chemistry. 15: 2536-44. PMID 18855677 DOI: 10.2174/092986708785909003 |
0.623 |
|
| 2008 |
Shrivastava IH, Jiang J, Amara SG, Bahar I. Time-resolved mechanism of extracellular gate opening and substrate binding in a glutamate transporter. The Journal of Biological Chemistry. 283: 28680-90. PMID 18678877 DOI: 10.1074/Jbc.M800889200 |
0.358 |
|
| 2008 |
Isin B, Schulten K, Tajkhorshid E, Bahar I. Mechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modes. Biophysical Journal. 95: 789-803. PMID 18390613 DOI: 10.1529/Biophysj.107.120691 |
0.367 |
|
| 2008 |
Chennubhotla C, Yang Z, Bahar I. Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL. Molecular Biosystems. 4: 287-92. PMID 18354781 DOI: 10.1039/B717819K |
0.409 |
|
| 2008 |
Eyal E, Bahar I. Toward a molecular understanding of the anisotropic response of proteins to external forces: insights from elastic network models. Biophysical Journal. 94: 3424-35. PMID 18223005 DOI: 10.1529/Biophysj.107.120733 |
0.398 |
|
| 2007 |
Bahar I, Chennubhotla C, Tobi D. Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation. Current Opinion in Structural Biology. 17: 633-40. PMID 18024008 DOI: 10.1016/J.Sbi.2007.09.011 |
0.404 |
|
| 2007 |
Chennubhotla C, Bahar I. Signal propagation in proteins and relation to equilibrium fluctuations. Plos Computational Biology. 3: 1716-26. PMID 17892319 DOI: 10.1371/Journal.Pcbi.0030172 |
0.386 |
|
| 2007 |
Chennubhotla C, Bahar I. Markov methods for hierarchical coarse-graining of large protein dynamics. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 14: 765-76. PMID 17691893 DOI: 10.1089/Cmb.2007.R015 |
0.402 |
|
| 2007 |
Eyal E, Chennubhotla C, Yang LW, Bahar I. Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models. Bioinformatics (Oxford, England). 23: i175-84. PMID 17646294 DOI: 10.1093/bioinformatics/btm186 |
0.513 |
|
| 2007 |
Yang LW, Eyal E, Chennubhotla C, Jee J, Gronenborn AM, Bahar I. Insights into Equilibrium Dynamics of Proteins from Comparison of NMR and X-Ray Data with Computational Predictions Structure. 15: 741-749. PMID 17562320 DOI: 10.1016/J.Str.2007.04.014 |
0.546 |
|
| 2007 |
Lazo JS, Skoko JJ, Werner S, Mitasev B, Bakan A, Koizumi F, Yellow-Duke A, Bahar I, Brummond KM. Structurally unique inhibitors of human mitogen-activated protein kinase phosphatase-1 identified in a pyrrole carboxamide library. The Journal of Pharmacology and Experimental Therapeutics. 322: 940-7. PMID 17538006 DOI: 10.1124/Jpet.107.122242 |
0.591 |
|
| 2007 |
Bahar I, Chennubhotla C, Erman B. Reply to ‘Comment on elastic network models and proteins’ Physical Biology. 4: 64-65. DOI: 10.1088/1478-3975/4/1/N02 |
0.679 |
|
| 2006 |
Isin B, Rader AJ, Dhiman HK, Klein-Seetharaman J, Bahar I. Predisposition of the dark state of rhodopsin to functional changes in structure. Proteins. 65: 970-83. PMID 17009319 DOI: 10.1002/Prot.21158 |
0.391 |
|
| 2006 |
Eyal E, Yang LW, Bahar I. Anisotropic network model: systematic evaluation and a new web interface. Bioinformatics (Oxford, England). 22: 2619-27. PMID 16928735 DOI: 10.1093/Bioinformatics/Btl448 |
0.574 |
|
| 2006 |
Yang LW, Rader AJ, Liu X, Jursa CJ, Chen SC, Karimi HA, Bahar I. oGNM: online computation of structural dynamics using the Gaussian Network Model. Nucleic Acids Research. 34: W24-31. PMID 16845002 DOI: 10.1093/Nar/Gkl084 |
0.621 |
|
| 2006 |
Chennubhotla C, Bahar I. Markov propagation of allosteric effects in biomolecular systems: application to GroEL-GroES. Molecular Systems Biology. 2: 36. PMID 16820777 DOI: 10.1038/Msb4100075 |
0.346 |
|
| 2006 |
Shrivastava IH, Bahar I. Common mechanism of pore opening shared by five different potassium channels. Biophysical Journal. 90: 3929-40. PMID 16533848 DOI: 10.1529/Biophysj.105.080093 |
0.339 |
|
| 2006 |
Tobi D, Bahar I. Optimal design of protein docking potentials: efficiency and limitations. Proteins. 62: 970-81. PMID 16385562 DOI: 10.1002/Prot.20859 |
0.363 |
|
| 2005 |
Berberich JA, Yang LW, Bahar I, Russell AJ. A stable three enzyme creatinine biosensor. 2. Analysis of the impact of silver ions on creatine amidinohydrolase. Acta Biomaterialia. 1: 183-91. PMID 16701795 DOI: 10.1016/J.Actbio.2004.11.007 |
0.532 |
|
| 2005 |
Berberich JA, Yang LW, Madura J, Bahar I, Russell AJ. A stable three-enzyme creatinine biosensor. 1. Impact of structure, function and environment on PEGylated and immobilized sarcosine oxidase. Acta Biomaterialia. 1: 173-81. PMID 16701794 DOI: 10.1016/J.Actbio.2004.11.006 |
0.51 |
|
| 2005 |
Tobi D, Bahar I. Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. Proceedings of the National Academy of Sciences of the United States of America. 102: 18908-13. PMID 16354836 DOI: 10.1073/Pnas.0507603102 |
0.426 |
|
| 2005 |
Chennubhotla C, Rader AJ, Yang LW, Bahar I. Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies. Physical Biology. 2: S173-80. PMID 16280623 DOI: 10.1088/1478-3975/2/4/S12 |
0.628 |
|
| 2005 |
Bahar I, Rader AJ. Coarse-grained normal mode analysis in structural biology. Current Opinion in Structural Biology. 15: 586-92. PMID 16143512 DOI: 10.1016/J.Sbi.2005.08.007 |
0.428 |
|
| 2005 |
Yang LW, Bahar I. Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. Structure (London, England : 1993). 13: 893-904. PMID 15939021 DOI: 10.1016/J.Str.2005.03.015 |
0.584 |
|
| 2005 |
Yang LW, Liu X, Jursa CJ, Holliman M, Rader AJ, Karimi HA, Bahar I. iGNM: a database of protein functional motions based on Gaussian Network Model. Bioinformatics (Oxford, England). 21: 2978-87. PMID 15860562 DOI: 10.1093/Bioinformatics/Bti469 |
0.614 |
|
| 2005 |
Rader AJ, Vlad DH, Bahar I. Maturation dynamics of bacteriophage HK97 capsid. Structure (London, England : 1993). 13: 413-21. PMID 15766543 DOI: 10.1016/J.Str.2004.12.015 |
0.389 |
|
| 2005 |
Ramaswamy A, Bahar I, Ioshikhes I. Structural dynamics of nucleosome core particle: comparison with nucleosomes containing histone variants. Proteins. 58: 683-96. PMID 15624215 DOI: 10.1002/Prot.20357 |
0.319 |
|
| 2004 |
Seki M, Masutani C, Yang LW, Schuffert A, Iwai S, Bahar I, Wood RD. High-efficiency bypass of DNA damage by human DNA polymerase Q. The Embo Journal. 23: 4484-94. PMID 15496986 DOI: 10.1038/Sj.Emboj.7600424 |
0.51 |
|
| 2004 |
Wang Y, Rader AJ, Bahar I, Jernigan RL. Global ribosome motions revealed with elastic network model. Journal of Structural Biology. 147: 302-14. PMID 15450299 DOI: 10.1016/J.Jsb.2004.01.005 |
0.553 |
|
| 2004 |
Temiz NA, Meirovitch E, Bahar I. Escherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data. Proteins. 57: 468-80. PMID 15382240 DOI: 10.1002/Prot.20226 |
0.397 |
|
| 2004 |
Rader AJ, Anderson G, Isin B, Khorana HG, Bahar I, Klein-Seetharaman J. Identification of core amino acids stabilizing rhodopsin. Proceedings of the National Academy of Sciences of the United States of America. 101: 7246-51. PMID 15123809 DOI: 10.1073/Pnas.0401429101 |
0.367 |
|
| 2004 |
Liu X, Karimi HA, Yang LW, Bahar I. Protein functional motion query and visualization Proceedings - International Computer Software and Applications Conference. 2: 86-89. DOI: 10.1109/CMPSAC.2004.1342683 |
0.574 |
|
| 2004 |
Rader AJ, Bahar I. Folding core predictions from network models of proteins Polymer. 45: 659-668. DOI: 10.1016/J.Polymer.2003.10.080 |
0.433 |
|
| 2003 |
Xu C, Tobi D, Bahar I. Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition. Journal of Molecular Biology. 333: 153-68. PMID 14516750 DOI: 10.1016/J.Jmb.2003.08.027 |
0.369 |
|
| 2003 |
Bagci Z, Kloczkowski A, Jernigan RL, Bahar I. The origin and extent of coarse-grained regularities in protein internal packing. Proteins. 53: 56-67. PMID 12945049 DOI: 10.1002/Prot.10435 |
0.584 |
|
| 2003 |
Ozkan SB, Dill KA, Bahar I. Computing the transition state populations in simple protein models. Biopolymers. 68: 35-46. PMID 12579578 DOI: 10.1002/Bip.10280 |
0.337 |
|
| 2002 |
Temiz NA, Bahar I. Inhibitor binding alters the directions of domain motions in HIV-1 reverse transcriptase. Proteins. 49: 61-70. PMID 12211016 DOI: 10.1002/Prot.10183 |
0.348 |
|
| 2002 |
Ozkan SB, Dill KA, Bahar I. Fast-folding protein kinetics, hidden intermediates, and the sequential stabilization model. Protein Science : a Publication of the Protein Society. 11: 1958-70. PMID 12142450 DOI: 10.1110/Ps.0207102 |
0.367 |
|
| 2002 |
Keskin O, Durell SR, Bahar I, Jernigan RL, Covell DG. Relating molecular flexibility to function: a case study of tubulin. Biophysical Journal. 83: 663-80. PMID 12124255 DOI: 10.1016/S0006-3495(02)75199-0 |
0.708 |
|
| 2002 |
Doruker P, Jernigan RL, Bahar I. Dynamics of large proteins through hierarchical levels of coarse-grained structures. Journal of Computational Chemistry. 23: 119-27. PMID 11913377 DOI: 10.1002/Jcc.1160 |
0.753 |
|
| 2002 |
Isin B, Doruker P, Bahar I. Functional motions of influenza virus hemagglutinin: a structure-based analytical approach. Biophysical Journal. 82: 569-81. PMID 11806902 DOI: 10.1016/S0006-3495(02)75422-2 |
0.676 |
|
| 2002 |
Keskin O, Bahar I, Flatow D, Covell DG, Jernigan RL. Molecular mechanisms of chaperonin GroEL-GroES function. Biochemistry. 41: 491-501. PMID 11781087 DOI: 10.1021/Bi011393X |
0.722 |
|
| 2002 |
Bagci Z, Jernigan RL, Bahar I. Residue packing in proteins: Uniform distribution on a coarse-grained scale The Journal of Chemical Physics. 116: 2269-2276. DOI: 10.1063/1.1432502 |
0.583 |
|
| 2002 |
Bagci Z, Jernigan RL, Bahar I. Residue coordination in proteins conforms to the closest packing of spheres Polymer. 43: 451-459. DOI: 10.1016/S0032-3861(01)00427-X |
0.569 |
|
| 2002 |
Doruker P, Bahar I, Baysal C, Erman B. Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories Polymer. 43: 431-439. DOI: 10.1016/S0032-3861(01)00424-4 |
0.791 |
|
| 2001 |
Ozkan SB, Bahar I, Dill KA. Transition states and the meaning of Phi-values in protein folding kinetics. Nature Structural Biology. 8: 765-9. PMID 11524678 DOI: 10.1038/Nsb0901-765 |
0.318 |
|
| 2001 |
Atilgan AR, Durell SR, Jernigan RL, Demirel MC, Keskin O, Bahar I. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophysical Journal. 80: 505-15. PMID 11159421 DOI: 10.1016/S0006-3495(01)76033-X |
0.79 |
|
| 2001 |
Konuklar FA, Aviyente V, Sen TZ, Bahar I. Modeling the deamidation of asparagine residues via succinimide intermediates Journal of Molecular Modeling. 7: 147-160. DOI: 10.1007/S008940100025 |
0.704 |
|
| 2000 |
Keskin O, Bahar I, Jernigan RL, Beutler JA, Shoemaker RH, Sausville EA, Covell DG. Characterization of anticancer agents by their growth inhibitory activity and relationships to mechanism of action and structure. Anti-Cancer Drug Design. 15: 79-98. PMID 10901296 DOI: 10.5072/Zenodo.19292 |
0.632 |
|
| 2000 |
Doruker P, Atilgan AR, Bahar I. Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: application to alpha-amylase inhibitor. Proteins. 40: 512-24. PMID 10861943 DOI: 10.1002/1097-0134(20000815)40:3<512::Aid-Prot180>3.0.Co;2-M |
0.706 |
|
| 2000 |
Keskin O, Jernigan RL, Bahar I. Proteins with similar architecture exhibit similar large-scale dynamic behavior. Biophysical Journal. 78: 2093-106. PMID 10733987 DOI: 10.1016/S0006-3495(00)76756-7 |
0.712 |
|
| 2000 |
Haliloglu T, Bahar I. Structure-based analysis of protein dynamics: comparison of theoretical results for hen lysozyme with X-ray diffraction and NMR relaxation data. Proteins. 37: 654-67. PMID 10651280 DOI: 10.1002/(Sici)1097-0134(19991201)37:4<654::Aid-Prot15>3.0.Co;2-J |
0.675 |
|
| 1999 |
Bahar I, Jernigan RL. Cooperative fluctuations and subunit communication in tryptophan synthase. Biochemistry. 38: 3478-90. PMID 10090734 DOI: 10.1021/Bi982697V |
0.52 |
|
| 1999 |
Keskin O, Bahar I. Packing of sidechains in low-resolution models for proteins. Folding & Design. 3: 469-79. PMID 9889162 DOI: 10.1016/S1359-0278(98)00064-9 |
0.579 |
|
| 1999 |
Bahar I, Erman B, Jernigan RL, Atilgan AR, Covell DG. Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function. Journal of Molecular Biology. 285: 1023-37. PMID 9887265 DOI: 10.1006/Jmbi.1998.2371 |
0.756 |
|
| 1999 |
Keskin O, Bahar I, Badretdinov AY, Ptitsyn OB, Jernigan RL. Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions. Protein Science : a Publication of the Protein Society. 7: 2578-86. PMID 9865952 DOI: 10.1002/Pro.5560071211 |
0.701 |
|
| 1999 |
Bahar I. DYNAMICS OF PROTEINS AND BIOMOLECULAR COMPLEXES: INFERRING FUNCTIONAL MOTIONS FROM STRUCTURE Reviews in Chemical Engineering. 15. DOI: 10.1515/Revce.1999.15.4.319 |
0.374 |
|
| 1999 |
Sen TZ, Bahar I, Erman B, Lauprêtre F, Monnerie L. Local dynamics of cis-1,4-polybutadiene and cis-1,4-polyisoprene. A comparative study based on cooperative kinematics theory and NMR experiments Macromolecules. 32: 3017-3024. DOI: 10.1021/Ma9811167 |
0.777 |
|
| 1999 |
Jernigan RL, Demirel MC, Bahar I. Relating Structure to Function Through the Dominant Slow Modes of Motion of DNA Topoisomerase II International Journal of Quantum Chemistry. 75: 301-312. DOI: 10.1002/(Sici)1097-461X(1999)75:3<301::Aid-Qua19>3.0.Co;2-0 |
0.707 |
|
| 1998 |
Demirel MC, Atilgan AR, Jernigan RL, Erman B, Bahar I. Identification of kinetically hot residues in proteins. Protein Science : a Publication of the Protein Society. 7: 2522-32. PMID 9865946 DOI: 10.1002/Pro.5560071205 |
0.81 |
|
| 1998 |
Lustig B, Bahar I, Jernigan RL. RNA bulge entropies in the unbound state correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access. Nucleic Acids Research. 26: 5212-7. PMID 9801321 DOI: 10.1093/Nar/26.22.5212 |
0.551 |
|
| 1998 |
Bahar I, Jernigan RL. Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms. Journal of Molecular Biology. 281: 871-84. PMID 9719641 DOI: 10.1006/Jmbi.1998.1978 |
0.613 |
|
| 1998 |
Ozkan B, Bahar I. Recognition of native structure from complete enumeration of low-resolution models with constraints. Proteins. 32: 211-22. PMID 9714160 DOI: 10.1002/(Sici)1097-0134(19980801)32:2<211::Aid-Prot7>3.0.Co;2-N |
0.376 |
|
| 1998 |
Haliloglu T, Bahar I. Coarse-grained simulations of conformational dynamics of proteins: application to apomyoglobin. Proteins. 31: 271-81. PMID 9593198 DOI: 10.1002/(Sici)1097-0134(19980515)31:3<271::Aid-Prot4>3.0.Co;2-M |
0.677 |
|
| 1998 |
Bahar I, Wallqvist A, Covell DG, Jernigan RL. Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model. Biochemistry. 37: 1067-75. PMID 9454598 DOI: 10.1021/Bi9720641 |
0.61 |
|
| 1998 |
Bahar I, Kaplan M, Jernigan RL. Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches. Proteins. 29: 292-308. PMID 9365985 DOI: 10.1002/(Sici)1097-0134(199711)29:3<292::Aid-Prot4>3.0.Co;2-D |
0.576 |
|
| 1998 |
Bahar I, Atilgan AR, Demirel MC, Erman B. Vibrational dynamics of folded proteins: Significance of slow and fast motions in relation to function and stability Physical Review Letters. 80: 2733-2736. DOI: 10.1103/Physrevlett.80.2733 |
0.772 |
|
| 1998 |
Atilgan A, Haliloglu T, Bahar I, Erman B. Correlated fluctuations in polymer networks Computational and Theoretical Polymer Science. 8: 55-59. DOI: 10.1016/S1089-3156(98)00014-2 |
0.755 |
|
| 1998 |
Erdal S, Bahar I, Erman B. Swelling of sodium chloride filled polybutadiene networks in water, water/ acetone and water/THF mixtures Polymer. 39: 2035-2041. DOI: 10.1016/S0032-3861(97)00306-6 |
0.645 |
|
| 1998 |
Erman B, Bahar I. Local dynamics and glass transition Macromolecular Symposia. 133: 33-46. DOI: 10.1002/Masy.19981330106 |
0.7 |
|
| 1997 |
Bahar I, Erman B, Haliloglu T, Jernigan RL. Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations. Biochemistry. 36: 13512-23. PMID 9354619 DOI: 10.1021/Bi971611F |
0.802 |
|
| 1997 |
Bahar I, Atilgan AR, Jernigan RL, Erman B. Understanding the recognition of protein structural classes by amino acid composition. Proteins. 29: 172-85. PMID 9329082 DOI: 10.1002/(Sici)1097-0134(199710)29:2<172::Aid-Prot5>3.0.Co;2-F |
0.735 |
|
| 1997 |
Bahar I, Atilgan AR, Erman B. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Folding & Design. 2: 173-81. PMID 9218955 DOI: 10.1016/S1359-0278(97)00024-2 |
0.681 |
|
| 1997 |
Doruker P, Bahar I. Role of water on unfolding kinetics of helical peptides studied by molecular dynamics simulations. Biophysical Journal. 72: 2445-56. PMID 9168021 DOI: 10.1016/S0006-3495(97)78889-1 |
0.656 |
|
| 1997 |
Bahar I, Jernigan RL. Coordination geometry of nonbonded residues in globular proteins. Folding & Design. 1: 357-70. PMID 9080182 DOI: 10.1016/S1359-0278(96)00051-X |
0.534 |
|
| 1997 |
Bahar I, Jernigan RL. Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation. Journal of Molecular Biology. 266: 195-214. PMID 9054980 DOI: 10.1006/Jmbi.1996.0758 |
0.58 |
|
| 1997 |
Bahar I, Cho J, Doruker P, Erman B, Haliloglu T, Kim E, Mattice W, Monnerie L, Rapold R. Three approaches that may permit more efficient simulation of the dynamics of atomistic models of polymers Trends in Polymer Science. 5: 155-160. DOI: 10.5072/Zenodo.19294 |
0.811 |
|
| 1997 |
Haliloglu T, Bahar I, Erman B. Gaussian Dynamics of Folded Proteins Physical Review Letters. 79: 3090-3093. DOI: 10.1103/Physrevlett.79.3090 |
0.785 |
|
| 1997 |
Erman B, Bahar I, Jernigan RL. Equilibrium states of rigid bodies with multiple interaction sites: Application to protein helices The Journal of Chemical Physics. 107: 2046-2059. DOI: 10.1063/1.474555 |
0.748 |
|
| 1997 |
Baysal C, Erman B, Bahar I, Lauprêtre F, Monnerie L. Local dynamics of bulk polybutadienes of various microstructures: Comparison of theory with NMR measurements Macromolecules. 30: 2058-2066. DOI: 10.1021/Ma9604707 |
0.674 |
|
| 1997 |
Bahar I. Local relaxation of polymers in dense media: Cooperative kinematics theory and applications Macromolecular Theory and Simulations. 6: 881-906. DOI: 10.1002/Mats.1997.040060502 |
0.413 |
|
| 1996 |
Jernigan RL, Bahar I. Structure-derived potentials and protein simulations. Current Opinion in Structural Biology. 6: 195-209. PMID 8728652 DOI: 10.1016/S0959-440X(96)80075-3 |
0.565 |
|
| 1996 |
Zhao W, Kloczkowski A, Mark JE, Erman B, Bahar I. Oriented Gelatin—A New Source for High-Performance Materials Journal of Macromolecular Science, Part A. 33: 525-540. DOI: 10.1080/10601329608010876 |
0.661 |
|
| 1996 |
Haliloglu T, Bahar I, Erman B. Response of a single grafted polyethylene chain to simple shear flow: A Brownian dynamics simulation study The Journal of Chemical Physics. 105: 2919-2926. DOI: 10.1063/1.472154 |
0.766 |
|
| 1996 |
Haliloǧlu T, Bahar I, Erman B, Kim E, Mattice WL. A dynamic rotational isomeric state approach for extension of the time scale of the local dynamics observed in fully atomistic molecular dynamics simulations: Application to polybutadiene The Journal of Chemical Physics. 104: 4828-4834. DOI: 10.1063/1.471177 |
0.785 |
|
| 1996 |
Haliloglu T, Bahar I, Erman B, Mattice WL. Relative Contributions of Coupled Rotations and Small-Amplitude Torsions to Conformational Relaxation in Polymers Macromolecules. 29: 8942-8947. DOI: 10.1021/Ma961021+ |
0.772 |
|
| 1996 |
Zhao W, Kloczkowski A, Mark JE, Erman B, Bahar I. Main-Chain Lyotropic Liquid-Crystalline Elastomers. 2. Orientation and Mechanical Properties of Polyisocyanate Films Macromolecules. 29: 2805-2812. DOI: 10.1021/Ma951229F |
0.671 |
|
| 1996 |
Zhao W, Kloczkowski A, Mark JE, Erman B, Bahar I. Main-Chain Lyotropic Liquid-Crystalline Elastomers. 1. Syntheses of Cross-Linked Polyisocyanate Gels Acquiring Liquid-Crystalline Behavior in the Swollen State Macromolecules. 29: 2796-2804. DOI: 10.1021/Ma951228N |
0.657 |
|
| 1996 |
Baysal C, Atilgan AR, Erman B, Bahar I. Molecular dynamics analysis of coupling between librational motions and isomeric jumps in chain molecules Macromolecules. 29: 2510-2514. DOI: 10.1021/Ma9508818 |
0.696 |
|
| 1996 |
Baysal C, Bahar I, Erman B, Monnerie L. Kinematics of Polymer Chains in Dense Medium. 4. Effect of Backbone Geometry and Application to Polybutadiene Macromolecules. 29: 2980-2988. DOI: 10.1021/Ma950847T |
0.648 |
|
| 1996 |
Fakirov S, Sarac Z, Anbar T, Boz B, Bahar I, Evstatiev M, Apostolov AA, Mark JE, Kloczkowski A. Mechanical properties and transition temperatures of cross-linked oriented gelatin. 1. Static and dynamic mechanical properties of cross-linked gelatin Colloid and Polymer Science. 274: 334-341. DOI: 10.1007/Bf00654053 |
0.382 |
|
| 1995 |
Besbes S, Bokobza L, Monnerie L, Bahar I, Erman B. Molecular orientation in deformed bimodal networks. 2. Fourier transform infrared measurements on poly(dimethylsiloxane) networks and comparison with theory Macromolecules. 28: 231-235. DOI: 10.5072/Zenodo.20262 |
0.675 |
|
| 1995 |
Yang Y, Kloczkowski A, Mark JE, Erman B, Bahar I. Experimental Studies of Elastomeric and Optical Properties, and Strain-Induced Liquid-Crystalline Phase Transitions, in Deformed (Hydroxypropyl)cellulose Networks in the Swollen State Macromolecules. 28: 4927-4931. DOI: 10.1021/Ma00118A021 |
0.652 |
|
| 1995 |
Yang Y, Kloczkowski A, Mark JE, Erman B, Bahar I. Theoretical Analysis of the Elastomeric and Optical Properties of Networks of Semirigid Chains in the Swollen State Macromolecules. 28: 4920-4926. DOI: 10.1021/Ma00118A020 |
0.67 |
|
| 1995 |
Bahar I, Baysal N, Erman B, Monnerie L. Kinematics of Polymer Chains in Dense Media. 3. Influence of Intramolecular Conformational Potentials Macromolecules. 28: 1038-1048. DOI: 10.1021/Ma00108A035 |
0.707 |
|
| 1995 |
Sarac Z, Erman B, Bahar I. Segmental Orientation in Deformed Networks. 2. Molecular Theory for Biaxial Deformation Macromolecules. 28: 582-588. DOI: 10.1021/Ma00106A024 |
0.673 |
|
| 1995 |
Bahar I, Erman B, Bokobza L, Monnerie L. Molecular Orientation in Deformed Bimodal Networks. 1. Theory Macromolecules. 28: 225-230. DOI: 10.1021/Ma00105A029 |
0.66 |
|
| 1995 |
Serhatkulu T, Erman B, Bahar I, Fakirov S, Evstatiev M, Sapundjieva D. Dynamic mechanical study of amorphous phases in poly(ethylene terephthalate) /nylon-6 blends Polymer. 36: 2371-2377. DOI: 10.1016/0032-3861(95)97335-D |
0.639 |
|
| 1995 |
Haliloglu T, Erman B, Bahar I. Dependence of segmental orientation on polymer conformational characteristics Polymer. 36: 4131-4134. DOI: 10.1016/0032-3861(95)90995-E |
0.757 |
|
| 1994 |
Bahar I, Jernigan RL. Cooperative structural transitions induced by non-homogeneous intramolecular interactions in compact globular proteins. Biophysical Journal. 66: 467-81. PMID 8161700 DOI: 10.1016/S0006-3495(94)80798-2 |
0.575 |
|
| 1994 |
Bahar I, Jernigan RL. Stabilization of intermediate density states in globular proteins by homogeneous intramolecular attractive interactions. Biophysical Journal. 66: 454-66. PMID 8161699 DOI: 10.1016/S0006-3495(94)80797-0 |
0.546 |
|
| 1994 |
Bahar I, Erman B, Fytas G, Steffen W. Intramolecular Contributions to Stretched-Exponential Relaxation Behavior in Polymers Macromolecules. 27: 5200-5205. DOI: 10.1021/Ma00096A051 |
0.68 |
|
| 1994 |
Baysal C, Erman B, Bahar I. Contribution of Short-Range Intramolecular Interactions to Local Chain Dynamics Macromolecules. 27: 3650-3657. DOI: 10.1021/Ma00091A029 |
0.704 |
|
| 1994 |
Bahar I, Erman B, Haliloglu T. Role of Structural Heterogeneities on Segmental Orientation in Deformed Chains: Application to Alternating Copolymers Macromolecules. 27: 1703-1709. DOI: 10.1021/Ma00085A007 |
0.776 |
|
| 1994 |
Jernigan R, Raghunathan G, Bahar I. Characterization of interactions and metal ion binding sites in proteins Current Opinion in Structural Biology. 4: 256-263. DOI: 10.1016/S0959-440X(94)90317-4 |
0.54 |
|
| 1994 |
Mark JE, Yang Y, Kloczkowski A, Erman B, Bahar I. A novel orientation technique for semi-rigid polymers. 2. Mechanical properties of cellulose acetate and hydroxypropylcellulose films Colloid & Polymer Science. 272: 393-399. DOI: 10.1007/Bf00659450 |
0.649 |
|
| 1994 |
Yang Y, Kloczkowski A, Mark JE, Erman B, Bahar I. A novel orientation technique for semi-rigid polymers. 1. Preparation of cross-linked cellulose acetate and hydroxypropylcellulose films having permanent anisotropy in the swollen state Colloid & Polymer Science. 272: 284-292. DOI: 10.1007/Bf00655499 |
0.662 |
|
| 1994 |
Sakrak G, Bahar I, Erman B. Computer simulations of two-dimensional trifunctional bimodal networks Macromolecular Theory and Simulations. 3: 151-161. DOI: 10.1002/Mats.1994.040030112 |
0.674 |
|
| 1993 |
Bahar I, Badur B, Doruker P. Solvent effect on translational diffusivity and orientational mobility of polymers in solution: A molecular dynamics study The Journal of Chemical Physics. 99: 2235-2246. DOI: 10.1063/1.465233 |
0.676 |
|
| 1993 |
Bokobza L, Besbes S, Monnerie L, Bahar I, Erman B. Segmental orientation in model networks of poly(dimethylsiloxane): Fourier transform infrared dichroism measurements and theoretical interpretation Polymeric Materials Science and Engineering, Proceedings of the Acs Division of Polymeric Materials Science and Engineering. 68: 272. DOI: 10.1021/Ma00033A018 |
0.675 |
|
| 1993 |
Besbes S, Bokobza L, Monnerie L, Bahar I, Erman B. An infra-red dichroism investigation of segmental orientation in dry and swollen poly(dimethylsiloxane) networks Polymer. 34: 1179-1182. DOI: 10.1016/0032-3861(93)90769-7 |
0.668 |
|
| 1993 |
Erman B, Bahar I, Besbes S, Bokobza L, Monnerie L. Interpretation of segmental orientation in deformed networks in terms of constrained junction model of rubber elasticity Polymer. 34: 1858-1864. DOI: 10.1016/0032-3861(93)90427-C |
0.676 |
|
| 1993 |
Haliloglu T, Erman B, Bahar I. Orientational mobility in uniaxially deformed polymer chains: a Brownian dynamics simulation study Polymer. 34: 440-442. DOI: 10.1016/0032-3861(93)90105-J |
0.777 |
|
| 1993 |
Kanberoglu C, Bahar I, Erman B. Stress-strain relations and molecular orientation in highly crosslinked cis-polyisoprene networks Polymer. 34: 4997-4999. DOI: 10.1016/0032-3861(93)90035-9 |
0.663 |
|
| 1992 |
Haliloglu T, Erman B, Bahar I. Time‐dependent probability distribution functions for orientational motions of segments in polymer chains The Journal of Chemical Physics. 97: 4438-4444. DOI: 10.1063/1.463886 |
0.769 |
|
| 1992 |
Haliloglu T, Bahar I, Erman B. Orientational and conformational correlations in deformed polymer chains with fixed end‐to‐end separation: A Brownian dynamics simulation study The Journal of Chemical Physics. 97: 4428-4437. DOI: 10.1063/1.463885 |
0.778 |
|
| 1992 |
Akcasu AZ, Bahar I, Erman B, Feng Y, Han CC. Theoretical and experimental study of dissolution of inhomogeneities formed during spinodal decomposition in polymer mixtures The Journal of Chemical Physics. 97: 5782-5793. DOI: 10.1063/1.463737 |
0.652 |
|
| 1992 |
Bahar I, Erman B, Monnerie L. Kinematics of polymer chains with freely rotating bonds in a restrictive environment. 2. Conformational and orientational correlations Macromolecules. 25: 6315-6321. DOI: 10.1021/Ma00049A031 |
0.683 |
|
| 1992 |
Bahar I, Erman B, Monnerie L. Kinematics of polymer chains with freely rotating bonds in a restrictive environment. 1. Theory Macromolecules. 25: 6309-6314. DOI: 10.1021/Ma00049A030 |
0.68 |
|
| 1992 |
Bahar I, Neuburger N, Mattice WL. Mechanism of local conformational transitions in poly(dialkylsiloxanes). Molecular dynamics simulations and dynamic rotational isomeric state approach Macromolecules. 25: 4619-4625. DOI: 10.1021/Ma00044A024 |
0.37 |
|
| 1992 |
Neuburger N, Bahar I, Mattice WL. Molecular dynamics simulations of poly(dialkylsiloxanes): conformational statistics and unperturbed chain dimensions Macromolecules. 25: 2447-2454. DOI: 10.1021/Ma00035A024 |
0.331 |
|
| 1992 |
Bahar I, Erman B, Kremer F, Fischer EW. Segmental motions of cis-polyisoprene in the bulk state: interpretation of dielectric relaxation data Macromolecules. 25: 816-825. DOI: 10.1021/Ma00028A048 |
0.677 |
|
| 1992 |
Kloczkowski A, Mark JE, Erman B, Bahar I. Isotropic-nematic phase transitions in polymer networks deformed in the dry and swollen states Studies in Polymer Science. 11: 221-244. DOI: 10.1016/B978-0-444-89397-0.50017-8 |
0.683 |
|
| 1992 |
Errnan B, Bahar I, Yang Y, Kloczkowski A, Mark JE. Novel orientation techniques for the preparation of high-performance materials from semi-flexible polymers such as the cellulosics Studies in Polymer Science. 11: 209-220. DOI: 10.1016/B978-0-444-89397-0.50016-6 |
0.31 |
|
| 1992 |
Erman B, Bahar I. Local Dynamics of Polymer Chains in Restrictive Environment Studies in Polymer Science. 11: 197-207. DOI: 10.1016/B978-0-444-89397-0.50015-4 |
0.675 |
|
| 1992 |
Akcasu AZ, Erman B, Bahar I. Nonlinear kinetics of spinodal decomposition, and dissolution of inhomogeneities formed by spinodal decomposition in polymer blends Makromolekulare Chemie. Macromolecular Symposia. 62: 43-60. DOI: 10.1002/Masy.19920620107 |
0.627 |
|
| 1991 |
Zúñiga I, Bahar I, Dodge R, Mattice WL. Molecular dynamics analysis of transitions between rotational isomers in polymethylene The Journal of Chemical Physics. 95: 5348-5354. DOI: 10.1063/1.461649 |
0.336 |
|
| 1991 |
Bahar I, Erman B, Monnerie L. Stochastic treatment of conformational transitions of polymer chains in the sub-Rouse regime Macromolecules. 24: 3618-3626. DOI: 10.1021/ma00012a024 |
0.628 |
|
| 1991 |
Bahar I, Erman B, Monnerie L. Stochastic treatment of conformational transitions of polymer chains in the sub-rouse regime Macromolecules. 24: 3618-3626. DOI: 10.1021/Ma00012A024 |
0.688 |
|
| 1991 |
Bahar I, Dodge R, Zuniga I, Mattice WL. Configurational statistics of poly(dimethylsiloxane). 2. A new rotational isomeric state approach Macromolecules. 24: 2993-2998. DOI: 10.1021/Ma00010A055 |
0.328 |
|
| 1991 |
Bahar I, Zuniga I, Dodge R, Mattice WL. Conformational statistics of poly(dimethylsiloxane). 1. Probability distribution of rotational isomers from molecular dynamics simulations Macromolecules. 24: 2986-2992. DOI: 10.1021/Ma00010A054 |
0.386 |
|
| 1991 |
Erman B, Haliloglu T, Bahar I, Mark JE. Segmental orientation in uniaxially deformed networks: a higher order approximation for finite chains and large deformations Macromolecules. 24: 901-907. DOI: 10.1021/Ma00004A015 |
0.751 |
|
| 1991 |
Bahar I, Mattice WL. Bimodal distribution of relaxational modes for the helix-coil transition in poly(oxymethylene) Macromolecules. 24: 877-882. DOI: 10.1021/Ma00004A011 |
0.365 |
|
| 1990 |
Kloczkowski A, Mark JE, Bahar I, Erman B. A closed form solution for the internal dynamics of polymer chains. I. Bonds with independent rotational potentials The Journal of Chemical Physics. 92: 4513-4518. DOI: 10.1063/1.457763 |
0.688 |
|
| 1990 |
Bahar I, Erman B, Kloczkowski A, Mark JE. A lattice model for segmental orientation in deformed polymeric networks. 2. Effect of chain stiffness and thermotropic interactions Macromolecules. 23: 5341-5346. DOI: 10.1021/Ma00228A006 |
0.659 |
|
| 1990 |
Erman B, Bahar I, Kloczkowski A, Mark JE. Lattice model for segmental orientation in deformed polymeric networks. 1. Contribution of intermolecular correlations Macromolecules. 23: 5335-5340. DOI: 10.1021/Ma00228A005 |
0.649 |
|
| 1990 |
Kuntman A, Bahar I, Baysal BM. Conformational characteristics of poly(ethyl methacrylate). Dipole moment measurements and calculations Macromolecules. 23: 4959-4963. DOI: 10.1021/Ma00225A014 |
0.32 |
|
| 1990 |
Bahar I, Erman B, Monnerie L. Effect of surrounding medium on intramolecular conformational changes in probe molecules Macromolecules. 23: 3805-3811. DOI: 10.1021/Ma00218A015 |
0.655 |
|
| 1990 |
Bahar I, Mattice WL. Efficient calculation of the intramolecular contribution to orientational autocorrelation functions using dynamic rotational isomeric state theory Macromolecules. 23: 2719-2723. DOI: 10.1021/Ma00212A022 |
0.334 |
|
| 1990 |
Bahar I, Erman B, Monnerie L. Local orientational motions in flexible polymeric chains Macromolecules. 23: 1174-1180. DOI: 10.1021/Ma00206A041 |
0.687 |
|
| 1989 |
Bahar I. Stochastics of rotational isomeric transitions in polymer chains The Journal of Chemical Physics. 91: 6525-6531. DOI: 10.1063/1.457368 |
0.336 |
|
| 1989 |
Bahar I, Mattice WL. Dynamics of conformational transitions to isomeric states favoring intramolecular excimer formation in aromatic polyesters with methylene or oxyethylene spacers The Journal of Chemical Physics. 90: 6783-6790. DOI: 10.1063/1.456297 |
0.389 |
|
| 1989 |
Bahar I, Mattice WL. Dynamics of conformational transitions to isomeric states favoring intramolecular excimer formation in polymeric chains. Application to dimer models of polystyrene The Journal of Chemical Physics. 90: 6775-6782. DOI: 10.1063/1.456296 |
0.402 |
|
| 1989 |
Bahar I, Erman B, Monnerie L. Application of the dynamic rotational isomeric states model to poly(ethylene oxide) and comparison with nuclear magnetic relaxation data Macromolecules. 22: 2396-2403. DOI: 10.1021/Ma00195A068 |
0.703 |
|
| 1989 |
Bahar I, Erman B, Monnerie L. Comparison of dynamic rotational isomeric state results with previous expressions for local chain motion Macromolecules. 22: 431-437. DOI: 10.1021/Ma00191A079 |
0.656 |
|
| 1989 |
Erman B, Bahar I, Navard P. Rheology of solutions of rodlike polymers: theory and comparison with experiments Macromolecules. 22: 358-364. DOI: 10.1021/Ma00191A065 |
0.634 |
|
| 1988 |
Bahar I, Mattice WL. The configurational contribution to the segmental orientation in network chains subject to perturbation by the excluded volume effect The Journal of Chemical Physics. 89: 1153-1158. DOI: 10.1063/1.455222 |
0.356 |
|
| 1988 |
Bahar I, Erman B. Anisotropy of static and dynamic orientational correlations in N‐alkanes The Journal of Chemical Physics. 88: 1228-1234. DOI: 10.1063/1.454243 |
0.688 |
|
| 1988 |
Erman B, Bahar I. Effects of chain structure and network constitution on segmental orientation in deformed amorphous networks Macromolecules. 21: 452-457. DOI: 10.1021/Ma00180A029 |
0.686 |
|
| 1987 |
Bahar I, Erman B. Activation energies of local conformational transitions in polymer chains Macromolecules. 20: 2310-2311. DOI: 10.1021/Ma00175A043 |
0.663 |
|
| 1987 |
Bahar I, Erman B. Osmotic compressibility and mechanical moduli of swollen polymeric networks Macromolecules. 20: 1696-1701. DOI: 10.1021/Ma00173A042 |
0.659 |
|
| 1987 |
Bahar I, Erman B. Investigation of local motions in polymers by the dynamic rotational isomeric state model Macromolecules. 20: 1368-1376. DOI: 10.1021/Ma00172A034 |
0.7 |
|
| 1987 |
Bahar I, Erbil HY, Baysal BM, Erman B. Determination of polymer-solvent interaction parameter from swelling of networks: the system poly(2-hydroxyethyl methacrylate)-diethylene glycol Macromolecules. 20: 1353-1356. DOI: 10.1021/Ma00172A031 |
0.645 |
|
| 1986 |
Bahar I, Baysal BM, Erman B. Local solvent effects on configurational characteristics of polymer chains: poly(p-chlorostyrene) in benzene Macromolecules. 19: 1703-1709. DOI: 10.1021/Ma00160A038 |
0.675 |
|
| 1986 |
Bahar I, Erman B. Effect of flow on solutions of rodlike molecules Journal of Polymer Science Part B: Polymer Physics. 24: 1361-1371. DOI: 10.1002/Polb.1986.090240612 |
0.623 |
|
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