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Ipsita Banerjee, Ph.D. - Publications

Affiliations: 
2005 Rutgers University, New Brunswick, New Brunswick, NJ, United States 
Area:
Chemical Engineering, Mechanical Engineering
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44 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Richardson T, Mathew S, Wiegand C, Pietz K, Candiello J, Ravikumar K, Banerjee I. Engineering Biophysical Cues for Controlled 3D Differentiation of Endoderm Derivatives. Methods in Molecular Biology (Clifton, N.J.). 2258: 73-92. PMID 33340355 DOI: 10.1007/978-1-0716-1174-6_6  0.746
2020 Goh SK, Halfter W, Richardson T, Bertera S, Vaidya V, Candiello J, Bradford M, Banerjee I. Organ-specific ECM arrays for investigating Cell-ECM interactions during stem cell differentiation. Biofabrication. PMID 33045682 DOI: 10.1088/1758-5090/abc05f  0.34
2020 Richardson T, Wiegand C, Adisa F, Ravikumar K, Candiello J, Kumta P, Banerjee I. Engineered peptide modified hydrogel platform for propagation of human pluripotent stem cells. Acta Biomaterialia. PMID 32603868 DOI: 10.1016/J.Actbio.2020.06.034  0.426
2019 Wiegand C, Banerjee I. Recent advances in the applications of iPSC technology. Current Opinion in Biotechnology. 60: 250-258. PMID 31386977 DOI: 10.1016/J.Copbio.2019.05.011  0.329
2019 Task K, Banerjee I. Cell Population Model to Track Stochastic Cellular Decision-Making During Differentiation. Methods in Molecular Biology (Clifton, N.J.). 1975: 53-77. PMID 31062305 DOI: 10.1007/978-1-4939-9224-9_3  0.471
2018 Candiello J, Grandhi TSP, Goh SK, Vaidya V, Lemmon-Kishi M, Eliato KR, Ros R, Kumta PN, Rege K, Banerjee I. 3D heterogeneous islet organoid generation from human embryonic stem cells using a novel engineered hydrogel platform. Biomaterials. 177: 27-39. PMID 29883914 DOI: 10.1016/J.Biomaterials.2018.05.031  0.442
2018 Richardson TC, Mathew S, Candiello JE, Goh SK, Kumta PN, Banerjee I. Development of an Alginate Array Platform to Decouple the Effect of Multiparametric Perturbations on Human Pluripotent Stem Cells During Pancreatic Differentiation. Biotechnology Journal. PMID 29316243 DOI: 10.1002/Biot.201700099  0.77
2018 Goh S, Bertera S, Vaidya V, Dumpe S, Barner S, Mathew S, Banerjee I. Development of perfusion bioreactor for whole organ engineering — a culture system that enhances cellular engraftment, survival and phenotype of repopulated pancreas Technology. 6: 118-134. DOI: 10.1142/S2339547818500085  0.72
2016 Candiello J, Richardson T, Padgaonkar K, Task K, Kumta PN, Banerjee I. Alginate encapsulation of chitosan nanoparticles: a viable alternative to soluble chemical signaling in definitive endoderm induction of human embryonic stem cells. Journal of Materials Chemistry. B. 4: 3575-3583. PMID 32263388 DOI: 10.1039/C5Tb02428E  0.443
2016 Richardson T, Barner S, Candiello J, Kumta PN, Banerjee I. Capsule stiffness regulates the efficiency of pancreatic differentiation of human embryonic stem cells. Acta Biomaterialia. PMID 26911881 DOI: 10.1016/J.Actbio.2016.02.025  0.45
2016 Candiello J, Richardson T, Padgaonkar K, Task K, Kumta PN, Banerjee I. Alginate encapsulation of chitosan nanoparticles: A viable alternative to soluble chemical signaling in definitive endoderm induction of human embryonic stem cells Journal of Materials Chemistry B. 4: 3575-3583. DOI: 10.1039/c5tb02428e  0.334
2015 Jaramillo M, Mathew S, Mamiya H, Goh SK, Banerjee I. Endothelial cells mediate islet-specific maturation of human embryonic stem cell-derived pancreatic progenitor cells. Tissue Engineering. Part A. 21: 14-25. PMID 24943736 DOI: 10.1089/Ten.Tea.2014.0013  0.772
2015 Jaramillo M, Singh SS, Velankar S, Kumta PN, Banerjee I. Inducing endoderm differentiation by modulating mechanical properties of soft substrates. Journal of Tissue Engineering and Regenerative Medicine. 9: 1-12. PMID 23008262 DOI: 10.1002/Term.1602  0.37
2015 Mathew S, Sundararaj S, Banerjee I. Network Analysis Identifies Crosstalk Interactions Governing TGF-β Signaling Dynamics during Endoderm Differentiation of Human Embryonic Stem Cells Processes. 3: 286-308. DOI: 10.3390/PR3020286  0.738
2014 Mathew S, Banerjee I. Quantitative Analysis of Robustness of Dynamic Response and Signal Transfer in Insulin mediated PI3K/AKT Pathway. Computers & Chemical Engineering. 71: 715-727. PMID 25506104 DOI: 10.1016/J.Compchemeng.2014.07.018  0.73
2014 Mathew S, Bartels J, Banerjee I, Vodovotz Y. Global sensitivity analysis of a mathematical model of acute inflammation identifies nonlinear dependence of cumulative tissue damage on host interleukin-6 responses. Journal of Theoretical Biology. 358: 132-48. PMID 24909493 DOI: 10.1016/J.Jtbi.2014.05.036  0.71
2014 Richardson T, Kumta PN, Banerjee I. Alginate encapsulation of human embryonic stem cells to enhance directed differentiation to pancreatic islet-like cells. Tissue Engineering. Part A. 20: 3198-211. PMID 24881778 DOI: 10.1089/Ten.Tea.2013.0659  0.454
2014 Mathew S, Sundararaj S, Mamiya H, Banerjee I. Regulatory interactions maintaining self-renewal of human embryonic stem cells as revealed through a systems analysis of PI3K/AKT pathway. Bioinformatics (Oxford, England). 30: 2334-42. PMID 24778109 DOI: 10.1093/Bioinformatics/Btu209  0.752
2014 Jaramillo M, Mathew S, Task K, Barner S, Banerjee I. Potential for pancreatic maturation of differentiating human embryonic stem cells is sensitive to the specific pathway of definitive endoderm commitment. Plos One. 9: e94307. PMID 24743345 DOI: 10.1371/Journal.Pone.0094307  0.761
2014 Task K, D'Amore A, Singh S, Candiello J, Jaramillo M, Wagner WR, Kumta P, Banerjee I. Systems level approach reveals the correlation of endoderm differentiation of mouse embryonic stem cells with specific microstructural cues of fibrin gels. Journal of the Royal Society, Interface / the Royal Society. 11: 20140009. PMID 24718448 DOI: 10.1098/Rsif.2014.0009  0.424
2014 Mathew S, Sundararaj S, Mamiya H, Banerjee I. Mechanistic insights into early endoderm differentiation of human embryonic stem cells using systems level analysis of signaling interactions Computing and Systems Technology Division 2014 - Core Programming Area At the 2014 Aiche Annual Meeting. 2: 751-752.  0.32
2014 Goh SK, Bertera S, Banerjee I. Re-engineering the 3D pancreatic niche: Co-culturing differentiating human embryonic stem cells with endothelial cells in decellularized pancreas Liaison Functions 2014 - Core Programming Area At the 2014 Aiche Annual Meeting. 485.  0.317
2013 Goh SK, Bertera S, Olsen P, Candiello JE, Halfter W, Uechi G, Balasubramani M, Johnson SA, Sicari BM, Kollar E, Badylak SF, Banerjee I. Perfusion-decellularized pancreas as a natural 3D scaffold for pancreatic tissue and whole organ engineering. Biomaterials. 34: 6760-72. PMID 23787110 DOI: 10.1016/J.Biomaterials.2013.05.066  0.364
2013 Goh SK, Olsen P, Banerjee I. Extracellular matrix aggregates from differentiating embryoid bodies as a scaffold to support ESC proliferation and differentiation. Plos One. 8: e61856. PMID 23637919 DOI: 10.1371/Journal.Pone.0061856  0.43
2013 Candiello J, Singh SS, Task K, Kumta PN, Banerjee I. Early differentiation patterning of mouse embryonic stem cells in response to variations in alginate substrate stiffness. Journal of Biological Engineering. 7: 9. PMID 23570553 DOI: 10.1186/1754-1611-7-9  0.416
2013 Mathew S, Bartels J, Banerjee I, Vodovotz Y. Global sensitivity analysis of endotoxin-induced acute inflammatory responses predicts the multimodal dependence of global tissue damage both on host IL-6 responses and endotoxin dose Journal of Critical Care. 28: e12-e13. DOI: 10.1016/J.Jcrc.2012.10.039  0.702
2013 Richardson T, Kumta PN, Banerjee I. Alginate encapsulation of human embryonic stem cells enhances its directed differentiation to pancreatic islet-like cells Food, Pharmaceutical and Bioengineering Division 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 317-318.  0.348
2012 Mathew S, Jaramillo M, Zhang X, Zhang LA, Soto-Gutiérrez A, Banerjee I. Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences. Bmc Systems Biology. 6: 154. PMID 23241383 DOI: 10.1186/1752-0509-6-154  0.768
2012 Zhang X, Jaramillo M, Singh S, Kumta P, Banerjee I. Analysis of regulatory network involved in mechanical induction of embryonic stem cell differentiation. Plos One. 7: e35700. PMID 22558203 DOI: 10.1371/Journal.Pone.0035700  0.432
2012 Jaramillo M, Banerjee I. Endothelial cell co-culture mediates maturation of human embryonic stem cell to pancreatic insulin producing cells in a directed differentiation approach. Journal of Visualized Experiments : Jove. PMID 22491132 DOI: 10.3791/3759  0.473
2012 Task K, Jaramillo M, Banerjee I. Population based model of human embryonic stem cell (hESC) differentiation during endoderm induction. Plos One. 7: e32975. PMID 22427920 DOI: 10.1371/Journal.Pone.0032975  0.45
2011 Candiello JE, Jaramillo M, Goh SK, Banerjee I. Role of substrates in diabetes therapy: stem cell differentiation and islet transplantation. Critical Reviews in Biomedical Engineering. 39: 535-55. PMID 22196225 DOI: 10.1615/Critrevbiomedeng.V39.I6.40  0.364
2011 Banerjee I, Sharma N, Yarmush M. Impact of co-culture on pancreatic differentiation of embryonic stem cells. Journal of Tissue Engineering and Regenerative Medicine. 5: 313-23. PMID 20717889 DOI: 10.1002/Term.317  0.459
2010 Banerjee I, Maiti S, Parashurama N, Yarmush M. An integer programming formulation to identify the sparse network architecture governing differentiation of embryonic stem cells. Bioinformatics (Oxford, England). 26: 1332-9. PMID 20363729 DOI: 10.1093/Bioinformatics/Btq139  0.365
2008 Banerjee I, Yarmush M. Directed differentiation of embryonic stem cells towards insulin-producing pancreatic cells Aiche Annual Meeting, Conference Proceedings.  0.321
2006 Banerjee I, Ierapetritou MG. An adaptive reduction scheme to model reactive flow Combustion and Flame. 144: 619-633. DOI: 10.1016/J.Combustflame.2005.10.001  0.5
2005 Banerjee I, Ierapetritou MG. Feasibility evaluation of nonconvex systems using shape reconstruction techniques Industrial and Engineering Chemistry Research. 44: 3638-3647. DOI: 10.1021/Ie049294D  0.498
2005 Banerjee I, Ierapetritou MG. An adaptive reduction scheme to develop flexible reduced chemistry models for reactive flow simulations Computer Aided Chemical Engineering. 20: 247-252. DOI: 10.1016/S1570-7946(05)80163-4  0.501
2005 Banerjee I, Ierapetritou MG. A novel feasibility analysis approach based on dimensionality reduction and shape reconstruction Computer Aided Chemical Engineering. 20: 85-90. DOI: 10.1016/S1570-7946(05)80136-1  0.5
2004 Banerjee I, Ierapetritou MG. Model independent parametric decision making Annals of Operations Research. 132: 135-155. DOI: 10.1023/B:Anor.0000045280.55945.E8  0.518
2003 Banerjee I, Ierapetritou MG. Parametric process synthesis for general nonlinear models Computers and Chemical Engineering. 27: 1499-1512. DOI: 10.1016/S0098-1354(03)00096-6  0.512
2003 Banerjee I, Ierapetritou MG. Development of an adaptive chemistry model considering micromixing effects Chemical Engineering Science. 58: 4537-4555. DOI: 10.1016/S0009-2509(03)00343-9  0.508
2002 Banerjee I, Ierapetritou MG. Design Optimization under Parameter Uncertainty for General Black-Box Models Industrial & Engineering Chemistry Research. 41: 6687-6697. DOI: 10.1021/Ie0202726  0.512
2002 Balakrishnan S, Georgopoulos P, Banerjee I, Ierapetritou M. Uncertainty considerations for describing complex reaction systems Aiche Journal. 48: 2875-2889. DOI: 10.1002/Aic.690481215  0.516
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