Piotr E. Marszalek - Publications

Affiliations: 
Mechanical Engineering and Materials Science Duke University, Durham, NC 
Area:
General Biophysics

86 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Scholl ZN, Li Q, Josephs E, Apostolidou D, Marszalek PE. Force Spectroscopy of Single Protein Molecules Using an Atomic Force Microscope. Journal of Visualized Experiments : Jove. PMID 30882788 DOI: 10.3791/55989  0.48
2018 Scholl ZN, Josephs EA, Marszalek PE. Correction to "Modular, Nondegenerate Polyprotein Scaffolds for Atomic Force Spectroscopy". Biomacromolecules. PMID 30585720 DOI: 10.1021/acs.biomac.8b01703  0.48
2018 Li Q, Scholl ZN, Marszalek PE. Unraveling the Mechanical Unfolding Pathways of a Multidomain Protein: Phosphoglycerate Kinase. Biophysical Journal. 115: 46-58. PMID 29972811 DOI: 10.1016/j.bpj.2018.05.028  0.48
2018 Scholl ZN, Marszalek PE. AFM-Based Single-Molecule Force Spectroscopy of Proteins. Methods in Molecular Biology (Clifton, N.J.). 1814: 35-47. PMID 29956225 DOI: 10.1007/978-1-4939-8591-3_3  0.48
2018 Plata CA, Scholl ZN, Marszalek PE, Prados A. Relevance of the Speed and Direction of Pulling in Simple Modular Proteins. Journal of Chemical Theory and Computation. PMID 29771510 DOI: 10.1021/acs.jctc.8b00347  0.48
2018 Gimsa J, Wysotzki P, Perutkova Š, Weihe T, Elter P, Marszalek PE, Kralj-Iglič V, Müller T, Iglic A. The spermidine-induced attraction of like-charged surfaces is correlated with the pH-dependent spermidine charge: force spectroscopy characterization. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 29382192 DOI: 10.1021/acs.langmuir.7b04199  0.32
2017 Scholl ZN, Yang W, Marszalek PE. Competing Pathways and Multiple Folding Nuclei in a Large Multidomain Protein, Luciferase. Biophysical Journal. 112: 1829-1840. PMID 28494954 DOI: 10.1016/j.bpj.2017.03.028  0.48
2016 Scholl ZN, Li Q, Yang W, Marszalek PE. Single-molecule force-spectroscopy reveals the calcium dependency of the alternative conformations in the native state of a βγ-crystallin protein. The Journal of Biological Chemistry. PMID 27378818 DOI: 10.1074/jbc.M116.729525  0.48
2016 Scholl ZN, Josephs EA, Marszalek PE. A Modular, Non-Degenerate Polyprotein Scaffold for Atomic Force Spectroscopy. Biomacromolecules. PMID 27276010 DOI: 10.1021/acs.biomac.6b00548  0.72
2015 Josephs EA, Zheng T, Marszalek PE. Atomic force microscopy captures the initiation of methyl-directed DNA mismatch repair. Dna Repair. 35: 71-84. PMID 26466357 DOI: 10.1016/j.dnarep.2015.08.006  0.72
2015 Scholl ZN, Yang W, Marszalek PE. Direct observation of multimer stabilization in the mechanical unfolding pathway of a protein undergoing oligomerization. Acs Nano. 9: 1189-97. PMID 25639698 DOI: 10.1021/nn504686f  0.72
2014 Li Q, Scholl ZN, Marszalek PE. Capturing the mechanical unfolding pathway of a large protein with coiled-coil probes. Angewandte Chemie (International Ed. in English). 53: 13429-33. PMID 25339429 DOI: 10.1002/anie.201407211  0.72
2014 Scholl ZN, Yang W, Marszalek PE. Chaperones rescue luciferase folding by separating its domains. The Journal of Biological Chemistry. 289: 28607-18. PMID 25160632 DOI: 10.1074/jbc.M114.582049  0.72
2014 Scholl ZN, Marszalek PE. Unraveling the mysteries of chaperone interactions of the myosin head. Biophysical Journal. 107: 541-2. PMID 25099791 DOI: 10.1016/j.bpj.2014.06.020  0.72
2014 Scholl ZN, Li Q, Marszalek PE. Single molecule mechanical manipulation for studying biological properties of proteins, DNA, and sugars. Wiley Interdisciplinary Reviews. Nanomedicine and Nanobiotechnology. 6: 211-29. PMID 24347439 DOI: 10.1002/wnan.1253  0.72
2014 Scholl ZN, Marszalek PE. Improving single molecule force spectroscopy through automated real-time data collection and quantification of experimental conditions. Ultramicroscopy. 136: 7-14. PMID 24001740 DOI: 10.1016/j.ultramic.2013.07.020  0.72
2013 Scholl ZN, Rabbi M, Lee D, Manson L, S-Gracz H, Marszalek PE. Origin of overstretching transitions in single-stranded nucleic acids. Physical Review Letters. 111: 188302. PMID 24237568 DOI: 10.1103/PhysRevLett.111.188302  0.72
2013 Dendzik M, Kulik A, Benedetti F, Marszalek PE, Dietler G. A single-molecule stretching method for lateral and normal AFM lever calibration. Nanotechnology. 24: 365703. PMID 23942390 DOI: 10.1088/0957-4484/24/36/365703  0.72
2013 Settanni G, Serquera D, Marszalek PE, Paci E, Itzhaki LS. Effects of ligand binding on the mechanical properties of ankyrin repeat protein gankyrin. Plos Computational Biology. 9: e1002864. PMID 23341763 DOI: 10.1371/journal.pcbi.1002864  0.72
2012 Loksztejn A, Scholl Z, Marszalek PE. Atomic force microscopy captures folded ribosome bound nascent chains. Chemical Communications (Cambridge, England). 48: 11727-9. PMID 23051696 DOI: 10.1039/c2cc35551e  0.72
2012 Lee W, Strümpfer J, Bennett V, Schulten K, Marszalek PE. Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats. The Journal of Biological Chemistry. 287: 19115-21. PMID 22514283 DOI: 10.1074/jbc.M112.365569  0.72
2012 Lee W, Zeng X, Rotolo K, Yang M, Schofield CJ, Bennett V, Yang W, Marszalek PE. Mechanical anisotropy of ankyrin repeats. Biophysical Journal. 102: 1118-26. PMID 22404934 DOI: 10.1016/j.bpj.2012.01.046  0.72
2012 Marszalek PE, Dufrêne YF. Stretching single polysaccharides and proteins using atomic force microscopy. Chemical Society Reviews. 41: 3523-34. PMID 22331199 DOI: 10.1039/c2cs15329g  0.72
2012 Kim M, Wang CC, Benedetti F, Marszalek PE. A nanoscale force probe for gauging intermolecular interactions. Angewandte Chemie (International Ed. in English). 51: 1903-6. PMID 22253141 DOI: 10.1002/anie.201107210  0.72
2012 Lee W, Strümpfer J, Bennett V, Schulten K, Marszalek PE. Mutation of conserved histidines alters tertiary structure and nanomechanics of consensus ankyrin repeats (Journal of Biological Chemistry (2012) 287, (19115-19121) DOI: 10.1074/jbc.A112.365569) Journal of Biological Chemistry. 287: 35539. DOI: 10.1074/jbc.A112.365569  0.72
2011 Kim M, Wang CC, Benedetti F, Rabbi M, Bennett V, Marszalek PE. Nanomechanics of streptavidin hubs for molecular materials. Advanced Materials (Deerfield Beach, Fla.). 23: 5684-8. PMID 22102445 DOI: 10.1002/adma.201103316  0.72
2011 Jiang Y, Marszalek PE. Atomic force microscopy captures MutS tetramers initiating DNA mismatch repair. The Embo Journal. 30: 2881-93. PMID 21666597 DOI: 10.1038/emboj.2011.180  0.72
2011 Wang CC, Tsong TY, Hsu YH, Marszalek PE. Inhibitor binding increases the mechanical stability of staphylococcal nuclease. Biophysical Journal. 100: 1094-9. PMID 21320455 DOI: 10.1016/j.bpj.2011.01.011  0.72
2010 Marszalek PE. DNA sequencing: detecting methylation with force. Nature Nanotechnology. 5: 765-6. PMID 21048791 DOI: 10.1038/nnano.2010.223  0.72
2010 Lee W, Zeng X, Zhou HX, Bennett V, Yang W, Marszalek PE. Full reconstruction of a vectorial protein folding pathway by atomic force microscopy and molecular dynamics simulations. The Journal of Biological Chemistry. 285: 38167-72. PMID 20870713 DOI: 10.1074/jbc.M110.179697  0.72
2010 Jiang Y, Rabbi M, Mieczkowski PA, Marszalek PE. Separating DNA with different topologies by atomic force microscopy in comparison with gel electrophoresis. The Journal of Physical Chemistry. B. 114: 12162-5. PMID 20799746 DOI: 10.1021/jp105603k  0.72
2010 Kim M, Abdi K, Lee G, Rabbi M, Lee W, Yang M, Schofield CJ, Bennett V, Marszalek PE. Fast and forceful refolding of stretched alpha-helical solenoid proteins. Biophysical Journal. 98: 3086-92. PMID 20550922 DOI: 10.1016/j.bpj.2010.02.054  0.72
2010 Serquera D, Lee W, Settanni G, Marszalek PE, Paci E, Itzhaki LS. Mechanical unfolding of an ankyrin repeat protein. Biophysical Journal. 98: 1294-301. PMID 20371329 DOI: 10.1016/j.bpj.2009.12.4287  0.72
2010 Zeng X, Hu H, Zhou HX, Marszalek PE, Yang W. Equilibrium sampling for biomolecules under mechanical tension. Biophysical Journal. 98: 733-40. PMID 20159170 DOI: 10.1016/j.bpj.2009.11.004  0.72
2009 Lee G, Muramoto GG, Chute JP, Marszalek PE. Nanomechanical fingerprints of gamma radiation damage to DNA. Journal of Nanoscience and Nanotechnology. 9: 7359-63. PMID 19908788 DOI: 10.1166/jnn.2009.1776  0.72
2009 Janke M, Rudzevich Y, Molokanova O, Metzroth T, Mey I, Diezemann G, Marszalek PE, Gauss J, Böhmer V, Janshoff A. Mechanically interlocked calix[4]arene dimers display reversible bond breakage under force. Nature Nanotechnology. 4: 225-9. PMID 19350031 DOI: 10.1038/nnano.2008.416  0.72
2009 Ke C, Loksztejn A, Jiang Y, Kim M, Humeniuk M, Rabbi M, Marszalek PE. Detecting solvent-driven transitions of poly(A) to double-stranded conformations by atomic force microscopy. Biophysical Journal. 96: 2918-25. PMID 19348773 DOI: 10.1016/j.bpj.2008.12.3939  0.72
2009 Jiang Y, Rabbi M, Kim M, Ke C, Lee W, Clark RL, Mieczkowski PA, Marszalek PE. UVA generates pyrimidine dimers in DNA directly. Biophysical Journal. 96: 1151-8. PMID 19186150 DOI: 10.1016/j.bpj.2008.10.030  0.72
2009 Rivera M, Lee W, Marszalek PE, Cole DG, Clark RL. Aligning molecular attachment sites in single molecule force spectroscopy measurements 2008 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc 2008. 4: 663-667. DOI: 10.1115/DETC2008-50019  0.72
2008 Rivera M, Lee W, Ke C, Marszalek PE, Cole DG, Clark RL. Minimizing pulling geometry errors in atomic force microscope single molecule force spectroscopy. Biophysical Journal. 95: 3991-8. PMID 18641069 DOI: 10.1529/biophysj.108.138842  0.72
2008 Ke C, Jiang Y, Mieczkowski PA, Muramoto GG, Chute JP, Marszalek PE. Nanoscale detection of ionizing radiation damage to DNA by atomic force microscopy. Small (Weinheim An Der Bergstrasse, Germany). 4: 288-94. PMID 18247386 DOI: 10.1002/smll.200700527  0.72
2008 Rivera M, Ke C, Marszalek PE, Cole DG, Clark RL. A method to correct pulling geometry induced errors in single molecule force spectroscopy measurements 2007 Proceedings of the Asme International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, Detc2007. 3: 801-807. DOI: 10.1115/DETC2007-35430  0.72
2007 Rabbi M, Marszalek PE. Measuring protein mechanics by atomic force microscopy. Csh Protocols. 2007: pdb.prot4901. PMID 21357003  1
2007 Rabbi M, Marszalek PE. Measuring polysaccharide mechanics by atomic force microscopy. Csh Protocols. 2007: pdb.prot4900. PMID 21357002  1
2007 Rabbi M, Marszalek PE. Construction of a single-axis molecular puller for measuring polysaccharide and protein mechanics by atomic force microscopy. Csh Protocols. 2007: pdb.prot4899. PMID 21357001  1
2007 Ke C, Humeniuk M, S-Gracz H, Marszalek PE. Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy. Physical Review Letters. 99: 018302. PMID 17678193 DOI: 10.1103/PhysRevLett.99.018302  0.72
2007 Jiang Y, Ke C, Mieczkowski PA, Marszalek PE. Detecting ultraviolet damage in single DNA molecules by atomic force microscopy. Biophysical Journal. 93: 1758-67. PMID 17483180 DOI: 10.1529/biophysj.107.108209  0.72
2007 Lee G, Rabbi M, Clark RL, Marszalek PE. Nanomechanical fingerprints of UV damage to DNA. Small (Weinheim An Der Bergstrasse, Germany). 3: 809-13. PMID 17393552 DOI: 10.1002/smll.200600592  0.72
2007 Ke C, Jiang Y, Rivera M, Clark RL, Marszalek PE. Pulling geometry-induced errors in single molecule force spectroscopy measurements. Biophysical Journal. 92: L76-8. PMID 17324999 DOI: 10.1529/biophysj.107.104901  0.72
2007 Snyder PW, Lee G, Marszalek PE, Clark RL, Toone EJ. A stochastic, cantilever approach to the evaluation of solution phase thermodynamic quantities. Proceedings of the National Academy of Sciences of the United States of America. 104: 2579-84. PMID 17307881 DOI: 10.1073/pnas.0606604104  0.72
2006 Zhang Q, Lu Z, Hu H, Yang W, Marszalek PE. Direct detection of the formation of V-amylose helix by single molecule force spectroscopy. Journal of the American Chemical Society. 128: 9387-93. PMID 16848474 DOI: 10.1021/ja057693+  0.72
2006 Lu Z, Hu H, Yang W, Marszalek PE. Simulating force-induced conformational transitions in polysaccharides with the SMD replica exchange method. Biophysical Journal. 91: L57-9. PMID 16829559 DOI: 10.1529/biophysj.106.090324  0.72
2006 Zhang Q, Marszalek PE. Identification of sugar isomers by single-molecule force spectroscopy. Journal of the American Chemical Society. 128: 5596-7. PMID 16637601 DOI: 10.1021/ja058828e  0.72
2006 Lee G, Abdi K, Jiang Y, Michaely P, Bennett V, Marszalek PE. Nanospring behaviour of ankyrin repeats. Nature. 440: 246-9. PMID 16415852 DOI: 10.1038/nature04437  0.72
2006 Zhang Q, Marszalek PE. Solvent effects on the elasticity of polysaccharide molecules in disordered and ordered states by single-molecule force spectroscopy Polymer. 47: 2526-2532. DOI: 10.1016/j.polymer.2005.12.088  0.72
2005 Dzwolak W, Marszalek PE. Zipper-like properties of [poly(L-lysine)+ poly(L-glutamic acid)]beta-pleated molecular self-assembly. Chemical Communications (Cambridge, England). 5557-9. PMID 16358062 DOI: 10.1039/b510150f  0.72
2005 Cieplak M, Marszalek PE. Mechanical unfolding of ubiquitin molecules. The Journal of Chemical Physics. 123: 194903. PMID 16321109 DOI: 10.1063/1.2046609  0.72
2005 Zhang Q, Jaroniec J, Lee G, Marszalek PE. Direct detection of inter-residue hydrogen bonds in polysaccharides by single-molecule force spectroscopy. Angewandte Chemie (International Ed. in English). 44: 2723-7. PMID 15786525 DOI: 10.1002/anie.200462067  0.72
2005 Zhang Q, Lee G, Marszalek PE. Atomic cranks and levers control sugar ring conformations Journal of Physics Condensed Matter. 17. DOI: 10.1088/0953-8984/17/18/001  0.72
2004 Lee G, Nowak W, Jaroniec J, Zhang Q, Marszalek PE. Molecular dynamics simulations of forced conformational transitions in 1,6-linked polysaccharides. Biophysical Journal. 87: 1456-65. PMID 15345528 DOI: 10.1529/biophysj.104.042879  0.72
2004 Lu Z, Nowak W, Lee G, Marszalek PE, Yang W. Elastic properties of single amylose chains in water: a quantum mechanical and AFM study. Journal of the American Chemical Society. 126: 9033-41. PMID 15264836 DOI: 10.1021/ja031940x  0.72
2004 Lee G, Nowak W, Jaroniec J, Zhang Q, Marszalek PE. Nanomechanical control of glucopyranose rotamers. Journal of the American Chemical Society. 126: 6218-9. PMID 15149204 DOI: 10.1021/ja0491984  0.72
2003 Marszalek PE, Oberhauser AF, Li H, Fernandez JM. The force-driven conformations of heparin studied with single molecule force microscopy. Biophysical Journal. 85: 2696-704. PMID 14507732 DOI: 10.1016/S0006-3495(03)74692-X  0.72
2003 Carrion-Vazquez M, Li H, Lu H, Marszalek PE, Oberhauser AF, Fernandez JM. The mechanical stability of ubiquitin is linkage dependent. Nature Structural Biology. 10: 738-43. PMID 12923571 DOI: 10.1038/nsb965  0.72
2002 Li H, Linke WA, Oberhauser AF, Carrion-Vazquez M, Kerkvliet JG, Lu H, Marszalek PE, Fernandez JM. Reverse engineering of the giant muscle protein titin. Nature. 418: 998-1002. PMID 12198551 DOI: 10.1038/nature00938  0.72
2002 Marszalek PE, Li H, Oberhauser AF, Fernandez JM. Chair-boat transitions in single polysaccharide molecules observed with force-ramp AFM Proceedings of the National Academy of Sciences of the United States of America. 99: 4278-4283. PMID 11917130 DOI: 10.1073/pnas.072435699  0.72
2001 Marszalek PE, Li H, Fernandez JM. Fingerprinting polysaccharides with single-molecule atomic force microscopy Nature Biotechnology. 19: 258-262. PMID 11231560 DOI: 10.1038/85712  0.72
2000 Carrion-Vazquez M, Oberhauser AF, Fisher TE, Marszalek PE, Li H, Fernandez JM. Mechanical design of proteins studied by single-molecule force spectroscopy and protein engineering Progress in Biophysics and Molecular Biology. 74: 63-91. PMID 11106807 DOI: 10.1016/S0079-6107(00)00017-1  0.72
2000 Li H, Carrion-Vazquez M, Oberhauser AF, Marszalek PE, Fernandez JM. Point mutations alter the mechanical stability of immunoglobulin modules Nature Structural Biology. 7: 1117-1120. PMID 11101892 DOI: 10.1038/81964  0.72
2000 Fisher TE, Carrion-Vazquez M, Oberhauser AF, Li H, Marszalek PE, Fernandez JM. Single molecule force spectroscopy of modular proteins in the nervous system Neuron. 27: 435-446. PMID 11055427  0.72
2000 Fisher TE, Marszalek PE, Fernandez JM. Stretching single molecules into novel conformations using the atomic force microscope Nature Structural Biology. 7: 719-724. PMID 10966637 DOI: 10.1038/78936  0.72
2000 Marszalek PE, Greenleaf WJ, Li H, Oberhauser AF, Fernandez JM. Atomic force microscopy captures quantized plastic deformation in gold nanowires. Proceedings of the National Academy of Sciences of the United States of America. 97: 6282-6. PMID 10841533 DOI: 10.1073/pnas.97.12.6282  0.72
1999 Marszalek PE, Lu H, Li H, Carrion-Vazquez M, Oberhauser AF, Schulten K, Fernandez JM. Mechanical unfolding intermediates in titin modules Nature. 402: 100-103. PMID 10573426 DOI: 10.1038/47083  0.72
1999 Oberhauser AF, Marszalek PE, Carrion-Vazquez M, Fernandez JM. Single protein misfolding events captured by atomic force microscopy Nature Structural Biology. 6: 1025-1028. PMID 10542093 DOI: 10.1038/14907  0.72
1999 Fisher TE, Marszalek PE, Oberhauser AF, Carrion-Vazquez M, Fernandez JM. The micro-mechanics of single molecules studied with atomic force microscopy Journal of Physiology. 520: 5-14. PMID 10517795 DOI: 10.1111/j.1469-7793.1999.00005.x  0.72
1999 Fisher TE, Oberhauser AF, Carrion-Vazquez M, Marszalek PE, Fernandez JM. The study of protein mechanics with the atomic force microscope Trends in Biochemical Sciences. 24: 379-384. PMID 10500301 DOI: 10.1016/S0968-0004(99)01453-X  0.72
1999 Carrion-Vazquez M, Marszalek PE, Oberhauser AF, Fernandez JM. Atomic force microscopy captures length phenotypes in single proteins. Proceedings of the National Academy of Sciences of the United States of America. 96: 11288-92. PMID 10500169 DOI: 10.1073/pnas.96.20.11288  0.72
1999 Marszalek PE, Pang YP, Li H, El Yazal J, Oberhauser AF, Fernandez JM. Atomic levers control pyranose ring conformations. Proceedings of the National Academy of Sciences of the United States of America. 96: 7894-8. PMID 10393918 DOI: 10.1073/pnas.96.14.7894  0.72
1999 Carrion-Vazquez M, Oberhauser AF, Fowler SB, Marszalek PE, Broedel SE, Clarke J, Fernandez JM. Mechanical and chemical unfolding of a single protein: a comparison. Proceedings of the National Academy of Sciences of the United States of America. 96: 3694-9. PMID 10097099 DOI: 10.1073/pnas.96.7.3694  0.72
1999 Marszalek PE, Oberhauser AF, Carrion-Vazquez M, Fernandez JM. Conformational transitions in single protein and polysaccharide molecules studied with AFM techniques Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 1: 78.  0.72
1998 Marszalek PE, Oberhauser AF, Pang YP, Fernandez JM. Polysaccharide elasticity governed by chair-boat transitions of the glucopyranose ring. Nature. 396: 661-4. PMID 9872313 DOI: 10.1038/25322  0.72
1998 Oberhauser AF, Marszalek PE, Erickson HP, Fernandez JM. The molecular elasticity of the extracellular matrix protein tenascin. Nature. 393: 181-5. PMID 9603523 DOI: 10.1038/30270  0.72
1997 Marszalek PE, Farrell B, Verdugo P, Fernandez JM. Kinetics of release of serotonin from isolated secretory granules. II. Ion exchange determines the diffusivity of serotonin. Biophysical Journal. 73: 1169-83. PMID 9284284 DOI: 10.1016/S0006-3495(97)78149-9  0.72
1997 Marszalek PE, Farrell B, Verdugo P, Fernandez JM. Kinetics of release of serotonin from isolated secretory granules. I. Amperometric detection of serotonin from electroporated granules. Biophysical Journal. 73: 1160-8. PMID 9284283 DOI: 10.1016/S0006-3495(97)78148-7  0.72
1995 Marszalek PE, Markin VS, Tanaka T, Kawaguchi H, Fernandez JM. The secretory granule matrix-electrolyte interface: A homologue of the p- n rectifying junction Biophysical Journal. 69: 1218-1229. PMID 8534793  0.72
1995 Marszalek PE, Markin VS, Tanaka T, Kawaguchi H, Fernandez JM. Pulsed laser imaging demonstrates the mechanism of current rectification at a hydrogel interface Langmuir. 11: 4196-4198.  0.72
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