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James Geller - Publications

Affiliations: 
New Jersey Institute of Technology, Newark, NJ, United States 
Area:
Computer Science
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52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Keloth VK, He Z, Elhanan G, Geller J. Alternative Classification of Identical Concepts in Different Terminologies: Different Ways to View the World. Journal of Biomedical Informatics. 103193. PMID 31048072 DOI: 10.1016/J.Jbi.2019.103193  0.321
2018 Zheng L, Chen Y, Elhanan G, Perl Y, Geller J, Ochs C. Complex overlapping concepts: An effective auditing methodology for families of similarly structured BioPortal ontologies. Journal of Biomedical Informatics. PMID 29852316 DOI: 10.1016/J.Jbi.2018.05.015  0.362
2017 He Z, Perl Y, Elhanan G, Chen Y, Geller J, Bian J. Auditing the Assignments of Top-Level Semantic Types in the UMLS Semantic Network to UMLS Concepts. Proceedings. Ieee International Conference On Bioinformatics and Biomedicine. 2017: 1262-1269. PMID 29375930 DOI: 10.1109/BIBM.2017.8217840  0.304
2017 Zheng L, Yumak H, Chen L, Ochs C, Geller J, Kapusnik-Uner J, Perl Y. Quality Assurance of Chemical Ingredient Classification for the National Drug File - Reference Terminology. Journal of Biomedical Informatics. PMID 28723580 DOI: 10.1016/J.Jbi.2017.07.013  0.348
2017 Ochs C, Perl Y, Geller J, Arabandi S, Tudorache T, Musen MA. An Empirical Analysis of Ontology Reuse in BioPortal. Journal of Biomedical Informatics. PMID 28583809 DOI: 10.1016/J.Jbi.2017.05.021  0.354
2016 Perl Y, Geller J, Halper M, Ochs C, Zheng L, Kapusnik-Uner J. Introducing the Big Knowledge to Use (BK2U) challenge. Annals of the New York Academy of Sciences. PMID 27750400 DOI: 10.1111/Nyas.13225  0.319
2016 Ochs C, Geller J, Perl Y, Musen MA. A Unified Software Framework for Deriving, Visualizing, and Exploring Abstraction Networks for Ontologies. Journal of Biomedical Informatics. PMID 27345947 DOI: 10.1016/J.Jbi.2016.06.008  0.388
2016 Ochs C, Perl Y, Halper M, Geller J, Lomax J. Quality assurance of the gene ontology using abstraction networks. Journal of Bioinformatics and Computational Biology. 14: 1642001. PMID 27301779 DOI: 10.1142/S0219720016420014  0.379
2016 Ochs C, He Z, Zheng L, Geller J, Perl Y, Hripcsak G, Musen MA. Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies. Journal of Biomedical Informatics. PMID 26988001 DOI: 10.1016/J.Jbi.2016.03.007  0.36
2015 Ochs C, Perl Y, Geller J, Haendel M, Brush M, Arabandi S, Tu S. Summarizing and visualizing structural changes during the evolution of biomedical ontologies using a Diff Abstraction Network. Journal of Biomedical Informatics. PMID 26048076 DOI: 10.1016/J.Jbi.2015.05.018  0.374
2015 He Z, Geller J, Chen Y. A comparative analysis of the density of the SNOMED CT conceptual content for semantic harmonization. Artificial Intelligence in Medicine. 64: 29-40. PMID 25890688 DOI: 10.1016/J.Artmed.2015.03.002  0.343
2015 Ochs C, Geller J, Perl Y, Chen Y, Xu J, Min H, Case JT, Wei Z. Scalable quality assurance for large SNOMED CT hierarchies using subject-based subtaxonomies. Journal of the American Medical Informatics Association : Jamia. 22: 507-18. PMID 25336594 DOI: 10.1136/Amiajnl-2014-003151  0.309
2015 Ochs C, Geller J, Perl Y, Chen Y, Agrawal A, Case JT, Hripcsak G. A tribal abstraction network for SNOMED CT target hierarchies without attribute relationships. Journal of the American Medical Informatics Association : Jamia. 22: 628-39. PMID 25332354 DOI: 10.1136/Amiajnl-2014-003173  0.336
2014 He Z, Morrey CP, Perl Y, Elhanan G, Chen L, Chen Y, Geller J. Sculpting the UMLS Refined Semantic Network. Online Journal of Public Health Informatics. 6: e181. PMID 25422719 DOI: 10.5210/Ojphi.V6I2.5412  0.399
2014 Rudniy A, Song M, Geller J. Mapping biological entities using the longest approximately common prefix method. Bmc Bioinformatics. 15: 187. PMID 24928653 DOI: 10.1186/1471-2105-15-187  0.346
2013 Geller J, He Z, Perl Y, Morrey CP, Xu J. Rule-based support system for multiple UMLS semantic type assignments. Journal of Biomedical Informatics. 46: 97-110. PMID 23041716 DOI: 10.1016/J.Jbi.2012.09.007  0.372
2012 Gu HH, Elhanan G, Perl Y, Hripcsak G, Cimino JJ, Xu J, Chen Y, Geller J, Paul Morrey C. A study of terminology auditors' performance for UMLS semantic type assignments. Journal of Biomedical Informatics. 45: 1042-8. PMID 22687822 DOI: 10.1016/J.Jbi.2012.05.006  0.334
2012 Chen Y, Gu H, Perl Y, Geller J. Overcoming an obstacle in expanding a UMLS semantic type extent. Journal of Biomedical Informatics. 45: 61-70. PMID 21925287 DOI: 10.1016/J.Jbi.2011.08.021  0.394
2012 Wang Y, Halper M, Wei D, Perl Y, Geller J. Abstraction of complex concepts with a refined partial-area taxonomy of SNOMED. Journal of Biomedical Informatics. 45: 15-29. PMID 21878396 DOI: 10.1016/J.Jbi.2011.08.013  0.368
2011 Tian T, Chun SA, Geller J. A prediction model for web search hit counts using word frequencies Journal of Information Science. 37: 462-475. DOI: 10.1177/0165551511415183  0.313
2009 Morrey CP, Geller J, Halper M, Perl Y. The Neighborhood Auditing Tool: a hybrid interface for auditing the UMLS. Journal of Biomedical Informatics. 42: 468-89. PMID 19475725 DOI: 10.1016/J.Jbi.2009.01.006  0.408
2009 Huang KC, Geller J, Halper M, Perl Y, Xu J. Using WordNet synonym substitution to enhance UMLS source integration. Artificial Intelligence in Medicine. 46: 97-109. PMID 19117739 DOI: 10.1016/J.Artmed.2008.11.008  0.329
2009 Chen Y, Gu HH, Perl Y, Geller J. Structural group-based auditing of missing hierarchical relationships in UMLS. Journal of Biomedical Informatics. 42: 452-67. PMID 18824248 DOI: 10.1016/J.Jbi.2008.08.006  0.382
2009 Chen Y, Gu HH, Perl Y, Geller J, Halper M. Structural group auditing of a UMLS semantic type's extent. Journal of Biomedical Informatics. 42: 41-52. PMID 18619563 DOI: 10.1016/J.Jbi.2008.06.001  0.382
2008 Chen Y, Perl Y, Geller J, Hripcsak G, Zhang L. Comparing and consolidating two heuristic metaschemas. Journal of Biomedical Informatics. 41: 293-317. PMID 18158275 DOI: 10.1016/J.Jbi.2007.11.001  0.376
2008 Geller J, Chun SA, Jung Y. Toward the semantic deep web Computer. 41: 95-97. DOI: 10.1109/Mc.2008.402  0.326
2006 Min H, Perl Y, Chen Y, Halper M, Geller J, Wang Y. Auditing as part of the terminology design life cycle. Journal of the American Medical Informatics Association : Jamia. 13: 676-90. PMID 16929044 DOI: 10.1197/Jamia.M2036  0.31
2006 Lee Y, Geller J. Semantic enrichment for medical ontologies. Journal of Biomedical Informatics. 39: 209-26. PMID 16185937 DOI: 10.1016/J.Jbi.2005.08.001  0.39
2006 Lee Y, Supekar K, Geller J. Ontology integration: experience with medical terminologies. Computers in Biology and Medicine. 36: 893-919. PMID 16157328 DOI: 10.1016/J.Compbiomed.2005.04.013  0.338
2005 Zhang L, Halper M, Perl Y, Geller J, Cimino JJ. Relationship structures and semantic type assignments of the UMLS Enriched Semantic Network. Journal of the American Medical Informatics Association : Jamia. 12: 657-66. PMID 16049233 DOI: 10.1197/Jamia.M1605  0.4
2005 Zhang L, Hripcsak G, Perl Y, Halper M, Geller J. An expert study evaluating the UMLS lexical metaschema. Artificial Intelligence in Medicine. 34: 219-33. PMID 15996860 DOI: 10.1016/J.Artmed.2005.01.002  0.398
2005 Zhang L, Perl Y, Halper M, Geller J, Hripcsak G. A lexical metaschema for the UMLS semantic network. Artificial Intelligence in Medicine. 33: 41-59. PMID 15617981 DOI: 10.1016/J.Artmed.2004.06.002  0.376
2004 Zhang L, Perl Y, Halper M, Geller J, Cimino JJ. An enriched unified medical language system semantic network with a multiple subsumption hierarchy. Journal of the American Medical Informatics Association : Jamia. 11: 195-206. PMID 14764611 DOI: 10.1197/Jamia.M1269  0.392
2004 Geller J, Perl Y, Lee J. Editorial: Ontology Challenges: A Thumbnail Historical Perspective Knowledge and Information Systems. 6: 375-379. DOI: 10.1007/S10115-003-0134-5  0.401
2004 Gu H, Perl Y, Geller J, Neuhold EJ. Contextual Partitioning for Comprehension of OODB Schemas Knowledge and Information Systems. 6: 315-344. DOI: 10.1007/S10115-003-0102-0  0.406
2003 Zhang L, Perl Y, Halper M, Geller J. Designing metaschemas for the UMLS enriched semantic network. Journal of Biomedical Informatics. 36: 433-49. PMID 14759817 DOI: 10.1016/J.Jbi.2003.11.006  0.402
2003 Geller J. John Sowa, Knowledge Representation: Logical, Philosophical, and Computational Foundations, Brooks/Cole, 2000, 512 pp., $70.95 (cloth), ISBN 0-534-94965-7 Minds and Machines. 13: 441-444. DOI: 10.1023/A:1024132024747  0.312
2003 Halper M, Liu LM, Geller J, Perl Y. Frameworks for incorporating semantic relationships into object-oriented database systems Concurrency Computation Practice and Experience. 15: 1337-1362. DOI: 10.1002/Cpe.733  0.383
2003 Liu LM, Geller J, Perl Y. Enhancing OODB semantics to support browsing in an OODB vacabulary representation Concurrency Computation Practice and Experience. 15: 845-869. DOI: 10.1002/Cpe.732  0.393
2002 Perl Y, Chen Z, Halper M, Geller J, Zhang L, Peng Y. The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network. Journal of Biomedical Informatics. 35: 194-212. PMID 12669983 DOI: 10.1016/S1532-0464(02)00528-2  0.439
2002 Liu LM, Halper M, Geller J, Perl Y. Using OODB modeling to partition a vocabulary into structurally and semantically uniform concept groups Ieee Transactions On Knowledge and Data Engineering. 14: 850-866. DOI: 10.1109/Tkde.2002.1019218  0.433
2002 Lee Y, Geller J. Efficient Transitive Closure Reasoning in a Combined Class/Part/Containment Hierarchy Knowledge and Information Systems. 4: 305-328. DOI: 10.1007/S101150200009  0.355
2001 Gu H, Perl Y, Halper M, Geller J, Kuo E, Cimino JJ. Partitioning an object-oriented terminology schema Methods of Information in Medicine. 40: 204-212. PMID 11501633 DOI: 10.1055/S-0038-1634167  0.329
2000 Gu H, Perl Y, Geller J, Halper M, Liu LM, Cimino JJ. Representing the UMLS as an object-oriented database: Modeling issues and advantages Journal of the American Medical Informatics Association. 7: 66-80. PMID 10641964 DOI: 10.1136/Jamia.2000.0070066  0.435
1999 Gu H, Halper M, Geller J, Perl Y. Benefits of an object-oriented database representation for controlled medical terminologies Journal of the American Medical Informatics Association. 6: 283-303. PMID 10428002 DOI: 10.1136/Jamia.1999.0060283  0.391
1999 Gu H, Perl Y, Geller J, Halper M, Singh M. A methodology for partitioning a vocabulary hierarchy into trees Artificial Intelligence in Medicine. 15: 77-98. PMID 9930617 DOI: 10.1016/S0933-3657(98)00046-3  0.365
1999 Liu LM, Halper M, Geller J, Perl Y. Controlled vocabularies in OODBs: Modeling issues and implementation Distributed and Parallel Databases. 7: 37-65. DOI: 10.1023/A:1008682210559  0.4
1997 Lee E(, Geller J. Parallel operations on class hierarchies with double strand representation Machine Intelligence and Pattern Recognition. 20: 69-94. DOI: 10.1016/S0923-0459(97)80005-5  0.319
1993 ADAM NR, GANGOPADHYAY A, GELLER J. DESIGN AND IMPLEMENTATION OF A KNOWLEDGE-BASED QUERY PROCESSOR International Journal of Cooperative Information Systems. 2: 107-125. DOI: 10.1142/S021821579300006X  0.341
1993 Geller J, Perl Y, Cannata P, Sheth A, Neuhold E. Structural integration: Concepts and case study Journal of Systems Integration. 3: 133-161. DOI: 10.1007/Bf01974954  0.351
1992 Geller J, Perl Y, Neuhold E, Sheth A. Structural schema integration with full and partial correspondence using the dual model Information Systems. 17: 443-464. DOI: 10.1016/0306-4379(92)90025-I  0.353
1991 Geller J. Propositional representation for graphical knowledge International Journal of Man-Machine Studies. 34: 97-131. DOI: 10.1016/0020-7373(91)90052-9  0.384
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