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Beverly M. Emerson - Publications

Affiliations: 
Biology University of California, San Diego, La Jolla, CA 
Area:
Molecular Biology, Biochemistry
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51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Lehman BJ, Lopez-Diaz FJ, Santisakultarm TP, Fang L, Shokhirev MN, Diffenderfer KE, Manor U, Emerson BM. Dynamic regulation of CTCF stability and sub-nuclear localization in response to stress. Plos Genetics. 17: e1009277. PMID 33411704 DOI: 10.1371/journal.pgen.1009277  0.403
2017 Henderson DJP, Miranda JL, Emerson BM. The β-NAD(+) salvage pathway and PKC-mediated signaling influence localized PARP-1 activity and CTCF Poly(ADP)ribosylation. Oncotarget. 8: 64698-64713. PMID 29029387 DOI: 10.18632/Oncotarget.19841  0.46
2015 Peña-Hernández R, Marques M, Hilmi K, Zhao T, Saad A, Alaoui-Jamali MA, del Rincon SV, Ashworth T, Roy AL, Emerson BM, Witcher M. Genome-wide targeting of the epigenetic regulatory protein CTCF to gene promoters by the transcription factor TFII-I. Proceedings of the National Academy of Sciences of the United States of America. 112: E677-86. PMID 25646466 DOI: 10.1073/Pnas.1416674112  0.633
2015 Lopez-Diaz F, Lee MW, Tariq M, Khan S, Dayn Y, Vaske C, Pourmand N, Emerson BM. Abstract A09: Single-cell RNA sequencing reveals phenotypic plasticity of drug tolerant, clonal populations of cancer cells Clinical Cancer Research. 21. DOI: 10.1158/1557-3265.Pms14-A09  0.386
2014 Lee MC, Lopez-Diaz FJ, Khan SY, Tariq MA, Dayn Y, Vaske CJ, Radenbaugh AJ, Kim HJ, Emerson BM, Pourmand N. Single-cell analyses of transcriptional heterogeneity during drug tolerance transition in cancer cells by RNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 111: E4726-35. PMID 25339441 DOI: 10.1073/Pnas.1404656111  0.401
2014 Krawczyk M, Emerson BM. p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes. Elife. 3: e01776. PMID 24843008 DOI: 10.7554/Elife.01776  0.487
2014 Krawczyk M, Emerson BM. Author response: p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes Elife. DOI: 10.7554/Elife.01776.022  0.466
2014 Krawczyk M, Emerson BM. P50-associated COX-2 Extragenic RNA (pacer) activates human COX-2 gene expression by occluding repressive NF-κB p50 complexes Elife. 2014. DOI: 10.7554/eLife.01776  0.458
2013 López-Díaz FJ, Gascard P, Balakrishnan SK, Zhao J, Del Rincon SV, Spruck C, Tlsty TD, Emerson BM. Coordinate transcriptional and translational repression of p53 by TGF-β1 impairs the stress response. Molecular Cell. 50: 552-64. PMID 23706820 DOI: 10.1016/J.Molcel.2013.04.029  0.488
2013 Lopez-Diaz FJ, Lee MW, Tariq MA, Dayn Y, Khan SY, Vaske C, Pourmand N, Emerson BM. Abstract PR05: Single-cell RNA sequencing reveals phenotypic plasticity of drug tolerant clonal populations of cancer cells Cancer Research. 73. DOI: 10.1158/1538-7445.Fbcr13-Pr05  0.394
2012 Balakrishnan SK, Witcher M, Berggren TW, Emerson BM. Functional and molecular characterization of the role of CTCF in human embryonic stem cell biology. Plos One. 7: e42424. PMID 22879976 DOI: 10.1371/Journal.Pone.0042424  0.416
2012 Vaske C, Lee W, Benz S, Sanborn J, Emerson B, Pourmand N, Lopez DF. Abstract P2-06-05: Single-cell RNA sequencing of paclitaxol-treated breast cancer cell lines to find individual cell response Cancer Research. 72. DOI: 10.1158/0008-5472.Sabcs12-P2-06-05  0.361
2011 Morachis JM, Huang R, Emerson BM. Identification of kinase inhibitors that target transcription initiation by RNA polymerase II. Oncotarget. 2: 18-28. PMID 21378408 DOI: 10.18632/Oncotarget.212  0.678
2010 Morachis JM, Murawsky CM, Emerson BM. Regulation of the p53 transcriptional response by structurally diverse core promoters. Genes & Development. 24: 135-47. PMID 20040571 DOI: 10.1101/Gad.1856710  0.695
2010 Emerson BM. Abstract ED07-03: Mechanisms of the cellular response to stress Cancer Prevention Research. 3. DOI: 10.1158/1940-6207.Prev-09-Ed07-03  0.62
2009 Witcher M, Emerson BM. Epigenetic silencing of the p16(INK4a) tumor suppressor is associated with loss of CTCF binding and a chromatin boundary. Molecular Cell. 34: 271-84. PMID 19450526 DOI: 10.1016/J.Molcel.2009.04.001  0.454
2008 Kaeser MD, Aslanian A, Dong MQ, Yates JR, Emerson BM. BRD7, a novel PBAF-specific SWI/SNF subunit, is required for target gene activation and repression in embryonic stem cells. The Journal of Biological Chemistry. 283: 32254-63. PMID 18809673 DOI: 10.1074/Jbc.M806061200  0.517
2006 Kaeser MD, Emerson BM. Remodeling plans for cellular specialization: unique styles for every room. Current Opinion in Genetics & Development. 16: 508-12. PMID 16905306 DOI: 10.1016/J.Gde.2006.08.001  0.514
2006 Gomes NP, Bjerke G, Llorente B, Szostek SA, Emerson BM, Espinosa JM. Gene-specific requirement for P-TEFb activity and RNA polymerase II phosphorylation within the p53 transcriptional program. Genes & Development. 20: 601-12. PMID 16510875 DOI: 10.1101/Gad.1398206  0.535
2005 Ling J, Baibakov B, Pi W, Emerson BM, Tuan D. The HS2 enhancer of the beta-globin locus control region initiates synthesis of non-coding, polyadenylated RNAs independent of a cis-linked globin promoter. Journal of Molecular Biology. 350: 883-96. PMID 15979088 DOI: 10.1016/J.Jmb.2005.05.039  0.571
2005 Zhang X, Odom DT, Koo SH, Conkright MD, Canettieri G, Best J, Chen H, Jenner R, Herbolsheimer E, Jacobsen E, Kadam S, Ecker JR, Emerson B, Hogenesch JB, Unterman T, et al. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proceedings of the National Academy of Sciences of the United States of America. 102: 4459-64. PMID 15753290 DOI: 10.1073/Pnas.0501076102  0.505
2004 Best JL, Amezcua CA, Mayr B, Flechner L, Murawsky CM, Emerson B, Zor T, Gardner KH, Montminy M. Identification of small-molecule antagonists that inhibit an activator: coactivator interaction. Proceedings of the National Academy of Sciences of the United States of America. 101: 17622-7. PMID 15585582 DOI: 10.1073/Pnas.0406374101  0.462
2004 Xu W, Cho H, Kadam S, Banayo EM, Anderson S, Yates JR, Emerson BM, Evans RM. A methylation-mediator complex in hormone signaling. Genes & Development. 18: 144-56. PMID 14729568 DOI: 10.1101/Gad.1141704  0.477
2003 Espinosa JM, Verdun RE, Emerson BM. p53 functions through stress- and promoter-specific recruitment of transcription initiation components before and after DNA damage. Molecular Cell. 12: 1015-27. PMID 14580351 DOI: 10.1016/S1097-2765(03)00359-9  0.575
2003 Kadam S, Emerson BM. Transcriptional specificity of human SWI/SNF BRG1 and BRM chromatin remodeling complexes. Molecular Cell. 11: 377-89. PMID 12620226 DOI: 10.1016/S1097-2765(03)00034-0  0.489
2002 Kadam S, Emerson BM. Mechanisms of chromatin assembly and transcription. Current Opinion in Cell Biology. 14: 262-8. PMID 12067647 DOI: 10.1016/S0955-0674(02)00330-7  0.519
2002 Emerson BM. Specificity of gene regulation. Cell. 109: 267-70. PMID 12015975 DOI: 10.1016/S0092-8674(02)00740-7  0.409
2001 Xu W, Chen H, Du K, Asahara H, Tini M, Emerson BM, Montminy M, Evans RM. A transcriptional switch mediated by cofactor methylation. Science (New York, N.Y.). 294: 2507-11. PMID 11701890 DOI: 10.1126/Science.1065961  0.361
2001 Espinosa JM, Emerson BM. Transcriptional regulation by p53 through intrinsic DNA/chromatin binding and site-directed cofactor recruitment Molecular Cell. 8: 57-69. PMID 11511360 DOI: 10.1016/S1097-2765(01)00283-0  0.532
2001 Zhang W, Kadam S, Emerson BM, Bieker JJ. Site-specific acetylation by p300 or CREB binding protein regulates erythroid Krüppel-like factor transcriptional activity via its interaction with the SWI-SNF complex Molecular and Cellular Biology. 21: 2413-2422. PMID 11259590 DOI: 10.1128/Mcb.21.7.2413-2422.2001  0.588
2000 Kadam S, McAlpine GS, Phelan ML, Kingston RE, Jones KA, Emerson BM. Functional selectivity of recombinant mammalian SWI/SNF subunits. Genes & Development. 14: 2441-51. PMID 11018012 DOI: 10.1101/Gad.828000  0.515
2000 Bagga R, Michalowski S, Sabnis R, Griffith JD, Emerson BM. HMG I/Y regulates long-range enhancer-dependent transcription on DNA and chromatin by changes in DNA topology Nucleic Acids Research. 28: 2541-2550. PMID 10871404 DOI: 10.1093/Nar/28.13.2541  0.528
1999 Emerson BM, Bagga R. LXIII Cold Spring Harbor Symposium on Quantitative Biology: Mechanisms of Transcription, 3-8 June 1998 Biochimica Et Biophysica Acta - Reviews On Cancer. 1423. PMID 9989213 DOI: 10.1016/S0304-419X(98)00038-9  0.536
1998 Bagga R, Armstrong JA, Emerson BM. Role of chromatin structure and distal enhancers in tissue-specific transcriptional regulation in vitro. Cold Spring Harbor Symposia On Quantitative Biology. 63: 569-76. PMID 10384322 DOI: 10.1101/Sqb.1998.63.569  0.493
1998 Armstrong JA, Bieker JJ, Emerson BM. A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro. Cell. 95: 93-104. PMID 9778250 DOI: 10.1016/S0092-8674(00)81785-7  0.556
1998 Armstrong JA, Emerson BM. Transcription of chromatin: these are complex times. Current Opinion in Genetics & Development. 8: 165-72. PMID 9610406 DOI: 10.1016/S0959-437X(98)80137-8  0.542
1997 Barton MC, Madani N, Emerson BM. Distal enhancer regulation by promoter derepression in topologically constrained DNA in vitro Proceedings of the National Academy of Sciences of the United States of America. 94: 7257-7262. PMID 9207078 DOI: 10.1073/Pnas.94.14.7257  0.554
1997 Bagga R, Emerson BM. An HMG I/Y-containing repressor complex and supercoiled DNA topology are critical for long-range enhancer-dependent transcription in vitro Genes and Development. 11: 629-639. PMID 9119227  0.449
1996 Barton MC, Emerson BM. Regulated gene expression in reconstituted chromatin and synthetic nuclei Methods in Enzymology. 274: 299-312. PMID 8902814 DOI: 10.1016/S0076-6879(96)74026-0  0.531
1996 Armstrong JA, Emerson BM. NF-E2 disrupts chromatin structure at human beta-globin locus control region hypersensitive site 2 in vitro. Molecular and Cellular Biology. 16: 5634-44. PMID 8816476 DOI: 10.1128/Mcb.16.10.5634  0.485
1994 Barton MC, Emerson BM. Regulated expression of the β-globin gene locus in synthetic nuclei Genes and Development. 8: 2453-2465. PMID 7958909 DOI: 10.1101/Gad.8.20.2453  0.535
1993 Barton MC, Madani N, Emerson BM. The erythroid protein cGATA-1 functions with a stage-specific factor to activate transcription of chromatin-assembled β-globin genes Genes and Development. 7: 1796-1809. PMID 8370527 DOI: 10.1101/Gad.7.9.1796  0.509
1992 Fong TC, Emerson BM. The erythroid-specific protein cGATA-1 mediates distal enhancer activity through a specialized β-globin TATA box Genes and Development. 6: 521-532. PMID 1559609 DOI: 10.1101/Gad.6.4.521  0.529
1990 Barton MC, Hoekstra MF, Emerson BM. Site-directed, recombination-mediated mutagenesis of a complex gene locus Nucleic Acids Research. 18: 7349-7355. PMID 2175433 DOI: 10.1093/Nar/18.24.7349  0.393
1989 Emerson BM, Nickol JM, Fong TC. Erythroid-specific activation and derepression of the chick β-globin promoter in vitro Cell. 57: 1189-1200. PMID 2736626 DOI: 10.1016/0092-8674(89)90056-1  0.456
1987 Emerson BM, Nickol JM, Jackson PD, Felsenfeld G. Analysis of the tissue-specific enhancer at the 3' end of the chicken adult beta-globin gene. Proceedings of the National Academy of Sciences of the United States of America. 84: 4786-90. PMID 3474625 DOI: 10.1073/Pnas.84.14.4786  0.43
1986 Felsenfeld G, Emerson BM, Jackson PD, Lewis CD, Nickol JM. Chromatin structure near transcriptionally active genes. Progress in Clinical and Biological Research. 218: 63-74. PMID 3763645  0.327
1985 Emerson BM, Lewis CD, Felsenfeld G. Interaction of specific nuclear factors with the nuclease-hypersensitive region of the chicken adult beta-globin gene: nature of the binding domain. Cell. 41: 21-30. PMID 2986843 DOI: 10.1016/0092-8674(85)90057-1  0.32
1984 Emerson BM, Felsenfeld G. Specific factor conferring nuclease hypersensitivity at the 5' end of the chicken adult beta-globin gene. Proceedings of the National Academy of Sciences of the United States of America. 81: 95-9. PMID 6320177 DOI: 10.1073/Pnas.81.1.95  0.384
1984 Emerson BM, Roeder RG. DNA sequences and transcription factor interactions of active and inactive forms of mammalian 5 S RNA genes Journal of Biological Chemistry. 259: 7926-7935. PMID 6203900  0.392
1984 Emerson BM, Roeder RG. Isolation and genomic arrangement of active and inactive forms of mammalian 5 S RNA genes Journal of Biological Chemistry. 259: 7916-7925. PMID 6203899  0.34
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