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Kyriacos Zygourakis - Publications

Affiliations: 
1980- Chemical Engineering Rice University, Houston, TX 
Area:
chemical reaction engineering, bioengineering
Website:
http://ithaca.rice.edu/

79 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Pyle LA, Hockaday WC, Boutton T, Zygourakis K, Kinney TJ, Masiello CA. Chemical and Isotopic Thresholds in Charring: Implications for the Interpretation of Charcoal Mass and Isotopic Data. Environmental Science & Technology. 49: 14057-64. PMID 26523420 DOI: 10.1021/acs.est.5b03087  1
2015 Vidonish JE, Zygourakis K, Masiello CA, Gao X, Mathieu J, Alvarez PJ. Pyrolytic Treatment and Fertility Enhancement of Soils Contaminated with Heavy Hydrocarbons. Environmental Science & Technology. PMID 26284736 DOI: 10.1021/acs.est.5b02620  1
2015 Sun H, Brewer CE, Masiello CA, Zygourakis K. Nutrient transport in soils amended with biochar: A transient model with two stationary phases and intraparticle diffusion Industrial and Engineering Chemistry Research. 54: 4123-4135. DOI: 10.1021/ie503893t  1
2015 Gooding A, Markenscoff P, Zygourakis K. Characterizing the pore structure of biochars using multiscale models and reactivity data Liaison Functions 2015 - Core Programming Area At the 2015 Aiche Annual Meeting. 645-647.  1
2014 Brewer CE, Chuang VJ, Masiello CA, Gonnermann H, Gao X, Dugan B, Driver LE, Panzacchi P, Zygourakis K, Davies CA. New approaches to measuring biochar density and porosity Biomass and Bioenergy. 66: 176-185. DOI: 10.1016/j.biombioe.2014.03.059  1
2013 Zygourakis K, Sun H, Markenscoff P. A nanoscale model for characterizing the complex pore structure of biochars Aiche Journal. 59: 3412-3420. DOI: 10.1002/aic.14134  1
2013 Gooding AA, Brewer CE, Zygourakis K. Producing biochars with consistent properties from forestry residues: Using spatial variations of reactor temperature history to choose pyrolysis conditions Forest and Plant Bioproducts Division 2013 - Core Programming Area At the 2013 Aiche Annual Meeting: Global Challenges For Engineering a Sustainable Future. 23.  1
2012 Spetsieris K, Zygourakis K. Single-cell behavior and population heterogeneity: solving an inverse problem to compute the intrinsic physiological state functions. Journal of Biotechnology. 158: 80-90. PMID 21930163 DOI: 10.1016/j.jbiotec.2011.08.018  1
2012 Cintolesi A, Clomburg JM, Rigou V, Zygourakis K, Gonzalez R. Quantitative analysis of the fermentative metabolism of glycerol in Escherichia coli. Biotechnology and Bioengineering. 109: 187-98. PMID 21858785 DOI: 10.1002/bit.23309  1
2012 Sun H, Hockaday WC, Masiello CA, Zygourakis K. Multiple controls on the chemical and physical structure of biochars Industrial and Engineering Chemistry Research. 51: 3587-3597. DOI: 10.1021/ie201309r  1
2012 Kinney TJ, Masiello CA, Dugan B, Hockaday WC, Dean MR, Zygourakis K, Barnes RT. Hydrologic properties of biochars produced at different temperatures Biomass and Bioenergy. 41: 34-43. DOI: 10.1016/j.biombioe.2012.01.033  1
2011 Stamatakis M, Zygourakis K. Deterministic and stochastic population-level simulations of an artificial lac operon genetic network. Bmc Bioinformatics. 12: 301. PMID 21791088 DOI: 10.1186/1471-2105-12-301  1
2011 Zygourakis K, Rigou V. Energy balances for the production of cellulosic ethanol 11aiche - 2011 Aiche Annual Meeting, Conference Proceedings 1
2011 Sun H, Masiello CA, Zygourakis K. Characterizing the pore structure of biochars: A new approach based on multiscale pore structure models and reactivity measurements 11aiche - 2011 Aiche Annual Meeting, Conference Proceedings 1
2010 Stamatakis M, Zygourakis K. A mathematical and computational approach for integrating the major sources of cell population heterogeneity. Journal of Theoretical Biology. 266: 41-61. PMID 20685607 DOI: 10.1016/j.jtbi.2010.06.002  1
2009 Cheng G, Markenscoff P, Zygourakis K. A 3D hybrid model for tissue growth: the interplay between cell population and mass transport dynamics. Biophysical Journal. 97: 401-14. PMID 19619455 DOI: 10.1016/j.bpj.2009.03.067  1
2009 Durnin G, Clomburg J, Yeates Z, Alvarez PJ, Zygourakis K, Campbell P, Gonzalez R. Understanding and harnessing the microaerobic metabolism of glycerol in Escherichia coli. Biotechnology and Bioengineering. 103: 148-61. PMID 19189409 DOI: 10.1002/bit.22246  1
2009 Spetsieris K, Zygourakis K, Mantzaris NV. A novel assay based on fluorescence microscopy and image processing for determining phenotypic distributions of rod-shaped bacteria. Biotechnology and Bioengineering. 102: 598-615. PMID 18853409 DOI: 10.1002/bit.22063  1
2008 Zygourakis K. Some interactions between problems in chemical engineering and the biological sciences Aiche Annual Meeting, Conference Proceedings 1
2008 Vargo R, Zygourakis K. Linking a Mitotic Oscillator to the Extracellular Environment Aiche Annual Meeting, Conference Proceedings 1
2008 Spetsieris K, Mantzaris NV, Zygourakis K. Single-cell behavior and population heterogeneity: An inverse modeling approach for computing the intrinsic physiological state functions Aiche Annual Meeting, Conference Proceedings 1
2007 Youssef BB, Cheng G, Zygourakis K, Markenscoff P. Regular paper: Parallel implementation of a cellular automaton modeling the growth of three-dimensional tissues International Journal of High Performance Computing Applications. 21: 196-209. DOI: 10.1177/1094342007074873  1
2006 Cheng G, Youssef BB, Markenscoff P, Zygourakis K. Cell population dynamics modulate the rates of tissue growth processes. Biophysical Journal. 90: 713-24. PMID 16299082 DOI: 10.1529/biophysj.105.063701  1
2005 Shin H, Temenoff JS, Bowden GC, Zygourakis K, Farach-Carson MC, Yaszemski MJ, Mikos AG. Osteogenic differentiation of rat bone marrow stromal cells cultured on Arg-Gly-Asp modified hydrogels without dexamethasone and beta-glycerol phosphate. Biomaterials. 26: 3645-54. PMID 15621255 DOI: 10.1016/j.biomaterials.2004.09.050  1
2005 Feng J, Markenscoff PA, Zygourakis K. Dynamics of heterogeneous cell populations growing under transport limitations: A hybrid, multi-scale model Aiche Annual Meeting, Conference Proceedings. 11660-11661.  1
2005 Zygourakis K, Feng J, Markenscoff PA. Mass transfer rates and initial conditions modulate the growth rates and structure of bioartificial tissues Aiche Annual Meeting, Conference Proceedings. 8358.  1
2005 Cheng G, Zygourakis K, Markenscoff PA. A 3d algorithm simulating acid-mediated growth of solid tumors Aiche Annual Meeting, Conference Proceedings. 8477.  1
2005 Spetsieris K, Portle S, Mantzaris NV, Zygourakis K. Analysis of cell population distributions using fluorescence microscopy Aiche Annual Meeting, Conference Proceedings. 8960.  1
2004 Shin H, Zygourakis K, Farach-Carson MC, Yaszemski MJ, Mikos AG. Modulation of differentiation and mineralization of marrow stromal cells cultured on biomimetic hydrogels modified with Arg-Gly-Asp containing peptides. Journal of Biomedical Materials Research. Part A. 69: 535-43. PMID 15127400 DOI: 10.1002/jbm.a.30027  1
2004 Shin H, Zygourakis K, Farach-Carson MC, Yaszemski MJ, Mikos AG. Attachment, proliferation, and migration of marrow stromal osteoblasts cultured on biomimetic hydrogels modified with an osteopontin-derived peptide. Biomaterials. 25: 895-906. PMID 14609678 DOI: 10.1016/S0142-9612(03)00602-1  1
2004 Zygourakis K. ChE at ... Rice University Chemical Engineering Education. 38: 88-93.  1
2004 Perkins DS, Zygourakis K. Detection and characterization of coal and char particle ignitions Industrial and Engineering Chemistry Research. 43: 3085-3091.  1
2003 Behravesh E, Zygourakis K, Mikos AG. Adhesion and migration of marrow-derived osteoblasts on injectable in situ crosslinkable poly(propylene fumarate-co-ethylene glycol)-based hydrogels with a covalently linked RGDS peptide. Journal of Biomedical Materials Research. Part A. 65: 260-70. PMID 12734821 DOI: 10.1002/jbm.a.10461  1
2003 Cai Y, Zygourakis K. A multiscale transient model for combustion of highly porous chars Industrial and Engineering Chemistry Research. 42: 2746-2755.  1
2002 Behravesh E, Jo S, Zygourakis K, Mikos AG. Synthesis of in situ cross-linkable macroporous biodegradable poly(propylene fumarate-co-ethylene glycol) hydrogels. Biomacromolecules. 3: 374-81. PMID 11888325 DOI: 10.1021/bm010158r  1
2002 Mani S, Zygourakis K, Markenscoff P. Modeling wound healing: Effects of cell heterogeneity and tissue structure Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 3: 2239-2240.  1
2000 Kouvroukoglou S, Dee KC, Bizios R, McIntire LV, Zygourakis K. Endothelial cell migration on surfaces modified with immobilized adhesive peptides Biomaterials. 21: 1725-1733. PMID 10905454 DOI: 10.1016/S0142-9612(99)00205-7  1
1999 Bergman AJ, Zygourakis K. Migration of lymphocytes on fibronectin-coated surfaces: temporal evolution of migratory parameters. Biomaterials. 20: 2235-44. PMID 10614930 DOI: 10.1016/S0142-9612(99)00154-4  1
1999 Markenscoff P, Zygourakis K. Pore structure and hydration rates modulate the release of bioactive agents from degradable scaffolds Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 720.  1
1999 Bergman AJ, Zygourakis K. Migration and adhesion of lymphocytes cultured under low shear conditions Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 780.  1
1999 Belgacem BY, Zygourakis K, Markenscoff P. Modeling the growth of three-dimensional tissues Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 2: 1180.  1
1998 Kouvroukoglou S, Lakkis CL, Wallace JD, Zygourakis K, Epner DE. Bioenergetics of rat prostate cancer cell migration. The Prostate. 34: 137-44. PMID 9465945 DOI: 10.1002/(SICI)1097-0045(19980201)34:2<137::AID-PROS9>3.0.CO;2-H  1
1998 Zygourakis K, Markenscoff P. Controlled release of drugs from devices exhibiting surface and bulk erosion Southern Biomedical Engineering Conference - Proceedings. 38.  1
1998 Ambani A, Zygourakis K, Markenscoff P. Modeling the growth of endothelium with cellular automata Southern Biomedical Engineering Conference - Proceedings. 145.  1
1998 Kouvroukoglou S, Wong M, Gurlek A, Evans GRD, Zygourakis K. Heparin and basic fibroblast growth factor help irradiated endothelial cells maintain their normal size and migration speed Southern Biomedical Engineering Conference - Proceedings. 96.  1
1997 Neelamegham S, Zygourakis K. A quantitative assay for intercellular aggregation Annals of Biomedical Engineering. 25: 180-187. PMID 9124732  1
1997 Neelamegham S, Munn LL, Zygourakis K. A model for the kinetics of homotypic cellular aggregation under static conditions Biophysical Journal. 72: 51-64. PMID 8994592  1
1996 Neelamegham S, Simon SI, McIntyre BW, Zygourakis K. Induction of homotypic lymphocyte aggregation: Evidence for a novel activation state of the β1 integrin Journal of Leukocyte Biology. 59: 872-882. PMID 8691073  1
1996 Zygourakis K, Markenscoff PA. Computer-aided design of bioerodible devices with optimal release characteristics: a cellular automata approach. Biomaterials. 17: 125-35. PMID 8624389 DOI: 10.1016/0142-9612(96)85757-7  1
1996 Becker ER, Watson RJ, Zygourakis K. Advanced substrate design for low emission vehicles Sae Technical Papers. DOI: 10.4271/961899  1
1996 Zygourakis K. Quantification and regulation of cell migration Tissue Engineering. 2: 1-16.  1
1995 Lee Y, Markenscoff PA, McIntire LV, Zygourakis K. Characterization of endothelial cell locomotion using a Markov chain model. Biochemistry and Cell Biology = Biochimie Et Biologie Cellulaire. 73: 461-72. PMID 8703417  1
1995 Lee Y, Kouvroukoglou S, McIntire LV, Zygourakis K. A cellular automaton model for the proliferation of migrating contact-inhibited cells. Biophysical Journal. 69: 1284-98. PMID 8534799 DOI: 10.1016/S0006-3495(95)79996-9  1
1994 Lee Y, McIntire LV, Zygourakis K. Analysis of endothelial cell locomotion: Differential effects of motility and contact inhibition. Biotechnology and Bioengineering. 43: 622-34. PMID 18615762 DOI: 10.1002/bit.260430712  1
1993 Teague TK, Munn L, Zygourakis K, McIntyre BW. Analysis of lymphocyte activation and proliferation by video microscopy and digital imaging Cytometry. 14: 772-782. PMID 8243206  1
1993 Munn LL, Glacken MW, McIntyre BW, Zygourakis K. Analysis of lymphocyte aggregation using digital image analysis Journal of Immunological Methods. 166: 11-25. PMID 8228280 DOI: 10.1016/0022-1759(93)90324-Z  1
1993 Matzakos AN, Zygourakis K. Computerized thermogravimetric reactor with video microscopy imaging system for coal pyrolysis and combustion studies Review of Scientific Instruments. 64: 1541-1548. DOI: 10.1063/1.1144024  1
1993 Zygourakis K. Effect of pyrolysis conditions on the macropore structure of coal-derived chars Energy &Amp; Fuels. 7: 33-41.  1
1991 Ryan MJ, Becker ER, Zygourakis K. Light-off performance of catalytic converters: The effect of heat/mass transfer characteristics Sae Technical Papers. DOI: 10.4271/910610  1
1991 Zygourakis K, Bizios R, Markenscoff P. Proliferation of anchorage-dependent contact-inhibited cells: I. Development of theoretical models based on cellular automata Biotechnology and Bioengineering. 38: 459-470.  1
1991 Zygourakis K, Markenscoff P, Bizios R. Proliferation of anchorage-dependent contact-inhibited cells. II: Experimental results and validation of the theoretical models Biotechnology and Bioengineering. 38: 471-479.  1
1990 Zygourakis K. Development and temporal evolution of erosion fronts in bioerodible controlled release devices Chemical Engineering Science. 45: 2359-2366. DOI: 10.1016/0009-2509(90)80116-V  1
1989 Zygourakis K. Transient operation of monolith catalytic converters: a two-dimensional reactor model and the effects of radially nonuniform flow distributions Chemical Engineering Science. 44: 2075-2086. DOI: 10.1016/0009-2509(89)85143-7  1
1988 Zygourakis K, Glass MW. Macropore size analysis using digital image processing and a stereological model Chemical Engineering Communications. 70: 39-55. DOI: 10.1080/00986448808940618  1
1988 Glass MW, Zygourakis K. Computerized microreactor and video microscopy system for coal pyrolysis studies Review of Scientific Instruments. 59: 580-587. DOI: 10.1063/1.1140261  1
1988 Thomaidis G, Zygourakis K, Wheeler MF. An explicit finite difference scheme based on the modified method of characteristics for solving convection‐diffusion problems in one space dimension Numerical Methods For Partial Differential Equations. 4: 119-138. DOI: 10.1002/num.1690040203  1
1988 Zygourakis K, Sandmann CW. Discrete structural models and their application to gas‐solid reacting systems Aiche Journal. 34: 2030-2040. DOI: 10.1002/aic.690341212  1
1988 Ballal G, Amundson NR, Zygourakis K. PORE STRUCTURAL EFFECTS IN CATALYTIC GASIFICATION OF COAL CHARS. Aiche Journal. 34: 426-434. DOI: 10.1002/aic.690340310  1
1987 Zygourakis K, Moudgalya K. Discrete Fourier Transforms and Their Application to the Pulse Chromatography Method Chemical Engineering Communications. 61: 107-125. DOI: 10.1080/00986448708912033  1
1987 Ballal G, Zygourakis K. Evolution of pore surface area during noncatalytic gas-solid reactions. 2. Experimental results and model validation Industrial and Engineering Chemistry Research. 26: 1787-1796.  1
1987 Ballal G, Zygourakis K. Evolution of pore surface area during noncatalytic gas-solid reactions. 1. Model development Industrial and Engineering Chemistry Research. 26: 911-921.  1
1986 Ballal G, Zygourakis K. Gasification of Coal Chars with Carbon Dioxide and Oxygen Chemical Engineering Communications. 49: 181-195. DOI: 10.1080/00986448608911802  1
1986 Sandmann CW, Zygourakis K. Evolution of pore structure during gas-solid reactions: Discrete models Chemical Engineering Science. 41: 733-739. DOI: 10.1016/0009-2509(86)87152-4  1
1986 Zygourakis K, Thomaidis G. NUMERICAL SOLUTION OF THE MISCIBLE OIL DISPLACEMENT PROBLEM USING FINITE DIFFERENCE SCHEMES WITH EXPLICIT INTEGRATION ALONG CHARACTERISTICS Society of Petroleum Engineers of Aime, (Paper) Spe 1
1985 Ballal G, Zygourakis K. Diffusion in particles with pores of varying cross-section Chemical Engineering Science. 40: 1477-1483. DOI: 10.1016/0009-2509(85)80089-0  1
1983 Zygourakis K, Aris R. Monotone iteration methods with adaptive collocation for solving coupled systems of nonlinear boundary value problems Computers and Chemical Engineering. 7: 183-193. DOI: 10.1016/0098-1354(83)85019-4  1
1983 Zygourakis K, Aris R. Multiple oxidation reactions and diffusion in the catalytic layer of monolith reactors Chemical Engineering Science. 38: 733-744. DOI: 10.1016/0009-2509(83)80184-5  1
1982 Zygourakis K, Aris R. Weakly coupled systems of nonlinear elliptic boundary value problems Nonlinear Analysis. 6: 555-569. DOI: 10.1016/0362-546X(82)90048-7  1
1982 Zygourakis K, Arri L, Amundson NR. Studies on the gasification of a single char particle Industrial and Engineering Chemistry Fundamentals. 21: 1-12.  1
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