Elias S. Manolakos - Publications

Affiliations: 
Electrical and Computer Engineering Northeastern University, Boston, MA, United States 
Area:
Computer Engineering

85 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Balomenos AD, Stefanou V, Manolakos ES. Analytics and visualization tools to characterize single-cell stochasticity using bacterial single-cell movie cytometry data. Bmc Bioinformatics. 22: 531. PMID 34715773 DOI: 10.1186/s12859-021-04409-9  1
2021 Pediaditakis I, Kodella KR, Manatakis DV, Le CY, Hinojosa CD, Tien-Street W, Manolakos ES, Vekrellis K, Hamilton GA, Ewart L, Rubin LL, Karalis K. Modeling alpha-synuclein pathology in a human brain-chip to assess blood-brain barrier disruption. Nature Communications. 12: 5907. PMID 34625559 DOI: 10.1038/s41467-021-26066-5  1
2021 Manatakis DV, VanDevender A, Manolakos ES. Erratum to: An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures. Bioinformatics (Oxford, England). PMID 34378020 DOI: 10.1093/bioinformatics/btab483  1
2021 Apostolou A, Panchakshari RA, Banerjee A, Manatakis DV, Paraskevopoulou MD, Luc R, Abu-Ali G, Dimitriou A, Lucchesi C, Kulkarni G, Maulana TI, Kasendra M, Kerns JS, Bleck B, Ewart L, ... Manolakos ES, et al. A novel microphysiological colon platform to decipher mechanisms driving human intestinal permeability. Cellular and Molecular Gastroenterology and Hepatology. PMID 34284165 DOI: 10.1016/j.jcmgh.2021.07.004  1
2020 Manatakis DV, VanDevender A, Manolakos ES. An information-theoretic approach for measuring the distance of organ tissue samples using their transcriptomic signatures. Bioinformatics (Oxford, England). PMID 32683449 DOI: 10.1093/Bioinformatics/Btaa654  1
2020 Manatakis DV, Manolakos ES. Predictive Tracking of Continuous Object Boundaries Using Sparse Local Estimates Ieee Access. 8: 152881-152899. DOI: 10.1109/Access.2020.3017074  1
2018 Sharma A, Manolakos ES. Multi-criteria protein structure comparison and structural similarities analysis using pyMCPSC. Plos One. 13: e0204587. PMID 30332415 DOI: 10.1371/Journal.Pone.0204587  1
2017 Balomenos AD, Tsakanikas P, Aspridou Z, Tampakaki AP, Koutsoumanis KP, Manolakos ES. Image analysis driven single-cell analytics for systems microbiology. Bmc Systems Biology. 11: 43. PMID 28376782 DOI: 10.1186/S12918-017-0399-Z  1
2016 Logaras E, Koutsouradis E, Manolakos ES. Python facilitates the rapid prototyping and hw/sw verification of processor centric SoCs for FPGAs Proceedings - Ieee International Symposium On Circuits and Systems. 2016: 1214-1217. DOI: 10.1109/ISCAS.2016.7527465  1
2015 Balomenos AD, Tsakanikas P, Manolakos ES. Tracking single-cells in overcrowded bacterial colonies. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2015: 6473-6. PMID 26737775 DOI: 10.1109/EMBC.2015.7319875  1
2015 Sharma A, Manolakos ES. Efficient Multicriteria Protein Structure Comparison on Modern Processor Architectures. Biomed Research International. 2015: 563674. PMID 26605332 DOI: 10.1155/2015/563674  1
2015 Manatakis DV, Manolakos ES. Estimating the Spatiotemporal Evolution Characteristics of Diffusive Hazards Using Wireless Sensor Networks Ieee Transactions On Parallel and Distributed Systems. 26: 2444-2458. DOI: 10.1109/TPDS.2014.2357033  1
2015 Kouskoumvekakis E, Soudris D, Manolakos ES. Many-core CPUs can deliver scalable performance to stochastic simulations of large-scale biochemical reaction networks Proceedings of the 2015 International Conference On High Performance Computing and Simulation, Hpcs 2015. 517-524. DOI: 10.1109/HPCSim.2015.7237084  1
2015 Koutsouradis E, Provelengios G, Kouskoumvekakis E, Manolakos ES. Scalable FPGA accelerator of the NRM algorithm for efficient stochastic simulation of large-scale biochemical reaction networks Proceedings - 18th Euromicro Conference On Digital System Design, Dsd 2015. 583-590. DOI: 10.1109/DSD.2015.53  1
2014 Ouzounoglou E, Kalamatianos D, Emmanouilidou E, Xilouri M, Stefanis L, Vekrellis K, Manolakos ES. In silico modeling of the effects of alpha-synuclein oligomerization on dopaminergic neuronal homeostasis. Bmc Systems Biology. 8: 54. PMID 24885905 DOI: 10.1186/1752-0509-8-54  1
2014 Logaras E, Hazapis OG, Manolakos ES. Python to accelerate embedded SoC design: A case study for systems biology Acm Transactions On Embedded Computing Systems. 13. DOI: 10.1145/2560032  1
2014 Manatakis DV, Nennes MG, Bakas IG, Manolakos ES. Simulation-driven emulation of collaborative algorithms to assess their requirements for a large-scale WSN implementation Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 8360-8364. DOI: 10.1109/ICASSP.2014.6855232  1
2013 Liarokapis MV, Artemiadis PK, Kyriakopoulos KJ, Manolakos ES. A learning scheme for reach to grasp movements: on EMG-based interfaces using task specific motion decoding models. Ieee Journal of Biomedical and Health Informatics. 17: 915-21. PMID 25055370 DOI: 10.1109/Jbhi.2013.2259594  1
2013 Stamoulias I, Manolakos ES. Parallel architectures for the kNN classifier - Design of soft IP cores and FPGA implementations Transactions On Embedded Computing Systems. 13. DOI: 10.1145/2514641.2514649  1
2013 Sharma A, Papanikolaou A, Manolakos ES. Accelerating all-to-All protein structures comparison with tmalign using a noc many-cores processor architecture Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium Workshops and Phd Forum, Ipdpsw 2013. 510-519. DOI: 10.1109/IPDPSW.2013.222  1
2013 Bogdos N, Manolakos ES. A tool for simulation and geo-animation of wildfires with fuel editing and hotspot monitoring capabilities Environmental Modelling and Software. 46: 182-195. DOI: 10.1016/J.Envsoft.2013.03.009  1
2012 Liarokapis MV, Artemiadis PK, Katsiaris PT, Kyriakopoulos KJ, Manolakos ES. Learning human reach-to-grasp strategies: Towards EMG-based control of robotic arm-hand systems Proceedings - Ieee International Conference On Robotics and Automation. 2287-2292. DOI: 10.1109/ICRA.2012.6225047  1
2012 Hazapis OG, Logaras E, Manolakos ES. A soft IP core generating SoCs for the efficient stochastic simulation of large Biomolecular Networks using FPGAs 2012 19th Ieee International Conference On Electronics, Circuits, and Systems, Icecs 2012. 77-80. DOI: 10.1109/ICECS.2012.6463795  1
2012 Passas N, Fried M, Manolakos ES. PeerAssist: A P2P platform supporting virtual communities to assist independent living of senior citizens Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7657: 25-32. DOI: 10.1007/978-3-642-35395-6_4  1
2011 Giannopoulou EG, Lepouras G, Manolakos ES. Visualizing meta-features in proteomic maps. Bmc Bioinformatics. 12: 308. PMID 21798033 DOI: 10.1186/1471-2105-12-308  1
2011 Tsakanikas P, Manolakos ES. Protein spot detection and quantification in 2-DE gel images using machine-learning methods. Proteomics. 11: 2038-50. PMID 21500344 DOI: 10.1002/Pmic.201000601  1
2011 Bedoya D, Manolakos ES, Novotny V. Prediction of biological integrity based on environmental similarity--revealing the scale-dependent link between study area and top environmental predictors. Water Research. 45: 2359-74. PMID 21342700 DOI: 10.1016/J.Watres.2011.01.007  1
2011 Manatakis DV, Manolakos ES. Collaborative sensor network algorithm for predicting the spatiotemporal evolution of hazardous phenomena Conference Proceedings - Ieee International Conference On Systems, Man and Cybernetics. 3439-3445. DOI: 10.1109/ICSMC.2011.6084201  1
2011 Manatakis DV, Manolakos ES. Predictive modeling of the spatiotemporal evolution of an environmental hazard and its sensor network implementation Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2056-2059. DOI: 10.1109/ICASSP.2011.5946729  1
2011 Tsakanikas P, Manolakos ES. A fully automated 2-DE gel image analysis pipeline for high throughput proteomics Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 605-608. DOI: 10.1109/ICASSP.2011.5946476  1
2011 Hazapis OG, Manolakos ES. Scalable FRM-SSA SoC design for the simulation of networks with thousands of biochemical reactions in real time Proceedings - 21st International Conference On Field Programmable Logic and Applications, Fpl 2011. 459-463. DOI: 10.1109/FPL.2011.90  1
2011 Bedoya D, Manolakos ES, Novotny V. Characterization of biological responses under different environmental conditions: A hierarchical modeling approach Ecological Modelling. 222: 532-545. DOI: 10.1016/J.Ecolmodel.2010.10.007  1
2010 Sekkas O, Manatakis DV, Manolakos ES, Hadjiefthymiades S. Sensor and computing infrastructure for environmental risks: The SCIER system Advanced Icts For Disaster Management and Threat Detection: Collaborative and Distributed Frameworks. 262-278. DOI: 10.4018/978-1-61520-987-3.ch016  1
2010 Manolakos ES, Galatopoullos DG. Service-oriented architectures for pervasive computing Handbook of Research On P2p and Grid Systems For Service-Oriented Computing: Models, Methodologies and Applications. 1: 147-174. DOI: 10.4018/978-1-61520-686-5.ch007  1
2010 Manolakos ES, Stamoulias I. IP-cores design for the kNN classifier Iscas 2010 - 2010 Ieee International Symposium On Circuits and Systems: Nano-Bio Circuit Fabrics and Systems. 4133-4136. DOI: 10.1109/ISCAS.2010.5537602  1
2010 Manolakos ES, Stamoulias I. Flexible IP cores for the k-NN classification problem and their FPGA implementation Proceedings of the 2010 Ieee International Symposium On Parallel and Distributed Processing, Workshops and Phd Forum, Ipdpsw 2010. DOI: 10.1109/IPDPSW.2010.5470733  1
2010 Tragas P, Manolakos ES. Traceability from "farm to fork" using RFID technology 2010 Ieee International Conference On Electronics, Circuits, and Systems, Icecs 2010 - Proceedings. 958-961. DOI: 10.1109/ICECS.2010.5724672  1
2010 Logaras E, Manolakos ES. SysPy: Using python for processor-centric SoC design 2010 Ieee International Conference On Electronics, Circuits, and Systems, Icecs 2010 - Proceedings. 762-765. DOI: 10.1109/ICECS.2010.5724624  1
2010 Samalekas K, Logaras E, Manolakos ES. Embedded web server for the AVR Butterfly enabling immediate access to wireless sensor node readings Lecture Notes of the Institute For Computer Sciences, Social-Informatics and Telecommunications Engineering. 29: 145-158. DOI: 10.1007/978-3-642-11870-8_10  1
2010 Manolakos ES, Logaras E, Paschos F. Wireless sensor network application for fire hazard detection and monitoring Lecture Notes of the Institute For Computer Sciences, Social-Informatics and Telecommunications Engineering. 29: 1-15. DOI: 10.1007/978-3-642-11870-8_1  1
2009 Tsakanikas P, Manolakos ES. Improving 2-DE gel image denoising using contourlets. Proteomics. 9: 3877-88. PMID 19670247 DOI: 10.1002/Pmic.200701027  1
2009 Giannopoulou EG, Garbis SD, Vlahou A, Kossida S, Lepouras G, Manolakos ES. Proteomic feature maps: a new visualization approach in proteomics analysis. Journal of Biomedical Informatics. 42: 644-53. PMID 19535004 DOI: 10.1016/J.Jbi.2009.01.007  1
2009 Novotny V, Bedoya D, Virani H, Manolakos E. Linking indices of biotic integrity to environmental and land use variables: multimetric clustering and predictive models. Water Science and Technology : a Journal of the International Association On Water Pollution Research. 59: 1-8. PMID 19151479 DOI: 10.2166/Wst.2009.769  1
2009 Bedoya D, Novotny V, Manolakos ES. Instream and offstream environmental conditions and stream biotic integrity. Importance of scale and site similarities for learning and prediction Ecological Modelling. 220: 2393-2406. DOI: 10.1016/J.Ecolmodel.2009.06.017  1
2008 Galatopoullos DG, Kalofonos DN, Manolakos ES. A P2P SOA enabling group collaboration through service composition Proceedings of the 5th International Conference On Pervasive Services, Icps 2008. 111-120. DOI: 10.1145/1387269.1387289  1
2008 Karras K, Manolakos ES. An embedded dynamically self-reconfigurable master-slaves MPSoC architecture Proceedings - 2008 International Conference On Field Programmable Logic and Applications, Fpl. 431-434. DOI: 10.1109/FPL.2008.4629976  1
2008 Ventoura S, Giannopoulou EG, Manolakos ES. ProtCV: A tool for extracting, visualizing and validating protein clusters using mass spectra peak-lists Proceedings - Ieee Symposium On Computer-Based Medical Systems. 221-223. DOI: 10.1109/CBMS.2008.95  1
2008 Giannopoulou EG, Lepouras G, Manolakos ES. VIP: Visualization of integrated proteomics data 8th Ieee International Conference On Bioinformatics and Bioengineering, Bibe 2008. DOI: 10.1109/BIBE.2008.4696670  1
2008 Tsakanikas P, Manolakos ES. Active contours based segmentation of 2DGE proteomics images European Signal Processing Conference 1
2008 Manolakos ES, Manatakis DV, Xanthopoulos G. Temperature field modeling and simulation of wireless sensor network behavior during a spreading wildfire European Signal Processing Conference 1
2007 Manolakos E, Virani H, Novotny V. Extracting knowledge on the links between the water body stressors and biotic integrity. Water Research. 41: 4041-50. PMID 17643465 DOI: 10.1016/J.Watres.2007.05.002  1
2005 Andrade-Cetto L, Manolakos ES. A graphical model formulation of the DNA base-calling problem 2005 Ieee Workshop On Machine Learning For Signal Processing. 369-374. DOI: 10.1109/MLSP.2005.1532931  1
2005 Andrade-Cetto L, Manolakos ES. Feature extraction for DNA base-calling using NNLS Ieee Workshop On Statistical Signal Processing Proceedings. 2005: 1408-1413.  1
2004 Andrade L, Manolakos ES. Robust normalization of DNA chromatograms by regression for improved base-calling Journal of the Franklin Institute. 341: 3-22. DOI: 10.1016/J.Jfranklin.2003.12.006  1
2004 Galatopoullos DG, Funk AP, Manolakos ES. Integrating Java and Matlab components into the same parallel and distributed application using JavaPorts Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 183-192.  1
2004 Manolakos ES, Galatopoullos DG, Funk AP. Distributed Matlab based signal and image processing using JavaPorts Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 5.  1
2003 Andrade L, Manolakos ES. Automatic estimation of mobility shift coefficients in DNA chromatograms Neural Networks For Signal Processing - Proceedings of the Ieee Workshop. 2003: 91-100. DOI: 10.1109/NNSP.2003.1318007  1
2003 Molina C, Manolakos E. Journal of VLSI Signal Processing Systems for Signal, Image, and Video Technology: Guest Editors' Introduction Journal of Vlsi Signal Processing Systems For Signal, Image, and Video Technology. 35: 227-228. DOI: 10.1023/B:VLSI.0000003054.66141.9f  1
2003 Andrade L, Manolakos ES. Signal Background Estimation and Baseline Correction Algorithms for Accurate DNA Sequencing Journal of Vlsi Signal Processing Systems For Signal, Image, and Video Technology. 35: 229-243. DOI: 10.1023/B:VLSI.0000003022.86639.1f  1
2002 Andrade L, Manolakos ES. Accurate estimation of the signal baseline in DNA chromatograms Neural Networks For Signal Processing - Proceedings of the Ieee Workshop. 2002: 35-44. DOI: 10.1109/NNSP.2002.1030015  1
2002 Manolakos ES. Clustering methods for accurate DNA base-calling Conference Record of the Asilomar Conference On Signals, Systems and Computers. 1: 311-315.  1
2001 Manolakos ES, Galatopoullos DG, Funk A. Component-based peer-to-peer distributed processing in heterogeneous networks using JavaPorts Proceedings - Ieee International Symposium On Network Computing and Applications, Nca 2001. 234-237. DOI: 10.1109/NCA.2001.962538  1
2001 Fridman J, Manolakos ES. Distributed memory parallel architecture based on modular linear arrays for 2-D separable transforms computation Journal of Vlsi Signal Processing Systems For Signal, Image, and Video Technology. 28: 187-203. DOI: 10.1023/A:1011113507906  1
2000 Stone A, Manolakos ES. DG2VHDL: a tool to facilitate the high level synthesis of parallel processing array architectures Journal of Vlsi Signal Processing Systems For Signal, Image, and Video Technology. 24: 99-120. DOI: 10.1023/A:1008122812813  1
2000 Manolakos ES, Stellakis HM. Systematic synthesis of parallel architectures for the computation of higher order cumulants Parallel Computing. 26: 655-676. DOI: 10.1016/S0167-8191(99)00125-8  1
2000 Pereira MS, Andrade L, Difrawy SE, Karger BL, Manolakos ES. Statistical learning formulation of the DNA base-calling problem and its solution in a Bayesian EM framework Discrete Applied Mathematics. 104: 229-258. DOI: 10.1016/S0166-218X(00)00192-X  1
1999 Galatopoullos DG, Manolakos ES. Developing parallel applications using the JavaPorts environment Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1586: 814-828. DOI: 10.1007/BFb0097968  1
1999 Manolakos ES, Galatopoullos DG. JavaPorts: an environment to facilitate parallel computing on a heterogeneous cluster of workstations Informatica (Ljubljana). 23: 97-105.  1
1998 Markogiannakis S, Manolakos ES. Recovering depth from stereo using ART neural networks Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 2: 1225-1228. DOI: 10.1109/ICASSP.1998.675492  1
1997 Kumar VP, Manolakos ES. Unsupervised statistical neural networks for model-based object recognition Ieee Transactions On Signal Processing. 45: 2709-2718. DOI: 10.1109/78.650097  1
1997 Fridman J, Manolakos ES. Discrete wavelet transform: Data dependence analysis and synthesis of distributed memory and control array architectures Ieee Transactions On Signal Processing. 45: 1291-1308. DOI: 10.1109/78.575701  1
1997 Fridman J, Manolakos ES. On the Scalability of 2-D Discrete Wavelet Transform Algorithms Multidimensional Systems and Signal Processing. 8: 185-218. DOI: 10.1023/A:1008229209464  1
1997 Lentz KP, Manolakos ES, Czeck E, Heller J. Multiple Experiment Environments for Testing Journal of Electronic Testing: Theory and Applications (Jetta). 11: 247-262. DOI: 10.1023/A:1008218506450  1
1996 Kechriotis GI, Manolakos ES. Hopfield neural network implementation of the optimal CDMA multiuser detector Ieee Transactions On Neural Networks. 7: 131-141. DOI: 10.1109/72.478397  1
1996 Stellakis HM, Manolakos ES. Adaptive computation of higher-order moments and its systolic realization International Journal of Adaptive Control and Signal Processing. 10: 283-302. DOI: 10.1002/(Sici)1099-1115(199603)10:2/3<283::Aid-Acs351>3.0.Co;2-B  1
1995 Monsen PT, Dzwonczyk M, Manolakos ES. Analog neural network-based helicopter gearbox health monitoring system Journal of the Acoustical Society of America. 98: 3235-3249. PMID 8550948 DOI: 10.1121/1.413813  1
1995 Kechriotis GI, An M, Bletsas M, Tolimieri R, Manolakos ES. A New Approach for Computing Multidimensional DFT's on Parallel Machines and its Implementation on the iPSC/860 Hypercube Ieee Transactions On Signal Processing. 43: 272-285. DOI: 10.1109/78.365307  1
1995 An M, Anupindi N, Bletsas M, Kechriotis G, Lu C, Manolakos ES, Tolimieri R. Comparison of 2-D FFT implementations on the intel paragon massively parallel supercomputer Icassp, Ieee International Conference On Acoustics, Speech and Signal Processing - Proceedings. 4: 2755-2758.  1
1994 Kechriotis G, Manolakos ES. Training Fully Recurrent Neural Networks with Complex Weights Ieee Transactions On Circuits and Systems Ii: Analog and Digital Signal Processing. 41: 235-238. DOI: 10.1109/82.279210  1
1994 Kechriotis G, Zervas E, Manolakos ES. Using Recurrent Neural Networks for Adaptive Communication Channel Equalization Ieee Transactions On Neural Networks. 5: 267-278. DOI: 10.1109/72.279190  1
1994 Stellakis HM, Manolakos ES. An array of processors for the real-time estimation of fourth- and lower-order moments Signal Processing. 36: 341-354. DOI: 10.1016/0165-1684(94)90032-9  1
1993 Al-Asaad H, Manolakos ES. A two-phase reconfiguration strategy for extracting linear arrays out of two-dimensional architectures Proceedings - Ieee International Symposium On Defect and Fault Tolerance in Vlsi Systems. 1993: 56-63. DOI: 10.1109/DFTVS.1993.595634  1
1991 Manolakos ES, Stellakis HM, Brooks DH. Parallel Processing for Biomedical Signal Processing Higher Order Spectral Analysis — An Application Computer. 24: 33-43. DOI: 10.1109/2.73511  1
1988 Manolakos ES, Kung SY. CORP - A NEW RECOVERY PROCEDURE FOR VLSI PROCESSOR ARRAYS . 91-95.  1
1984 Lagodimos AG, Manolakos E. Computer-aided selection of ISO manufacturing limits for interference fit joints Computers in Industry. 5: 21-29. DOI: 10.1016/0166-3615(84)90034-4  0.01
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