Barry Demchak, Ph.D. - Publications

Affiliations: 
2013 Computer Science and Engineering University of California, San Diego, La Jolla, CA 
Area:
Computer Science

21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Qu K, Garamszegi S, Wu F, Thorvaldsdottir H, Liefeld T, Ocana M, Borges-Rivera D, Pochet N, Robinson JT, Demchak B, Hull T, Ben-Artzi G, Blankenberg D, Barber GP, Lee BT, et al. Integrative genomic analysis by interoperation of bioinformatics tools in GenomeSpace. Nature Methods. PMID 26780094 DOI: 10.1038/nmeth.3732  0.72
2015 Pratt D, Chen J, Welker D, Rivas R, Pillich R, Rynkov V, Ono K, Miello C, Hicks L, Szalma S, Stojmirovic A, Dobrin R, Braxenthaler M, Kuentzer J, Demchak B, et al. NDEx, the Network Data Exchange. Cell Systems. 1: 302-305. PMID 26594663 DOI: 10.1016/j.cels.2015.10.001  0.72
2015 Summer G, Kelder T, Ono K, Radonjic M, Heymans S, Demchak B. cyNeo4j: connecting Neo4j and Cytoscape. Bioinformatics (Oxford, England). 31: 3868-9. PMID 26272981 DOI: 10.1093/bioinformatics/btv460  0.72
2014 Pico AR, Bader GD, Demchak B, Guitart Pla O, Hull T, Longabaugh W, Lopes C, Lotia S, Molenaar P, Montojo J, Morris JH, Ono K, Schwikowski B, Welker D, Ideker T. The Cytoscape app article collection. F1000research. 3: 138. PMID 25580224 DOI: 10.12688/f1000research.4642.1  0.72
2014 Ono K, Demchak B, Ideker T. Cytoscape tools for the web age: D3.js and Cytoscape.js exporters. F1000research. 3: 143. PMID 25520778 DOI: 10.12688/f1000research.4510.2  0.72
2014 Su G, Morris JH, Demchak B, Bader GD. Biological network exploration with cytoscape 3. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. 47: 8.13.1-8.13.24. PMID 25199793 DOI: 10.1002/0471250953.bi0813s47  0.72
2014 Demchak B, Hull T, Reich M, Liefeld T, Smoot M, Ideker T, Mesirov JP. Cytoscape: the network visualization tool for GenomeSpace workflows. F1000research. 3: 151. PMID 25165537 DOI: 10.12688/f1000research.4492.2  0.72
2014 Welker D, Demchak B. Porting and using PanGIA for Cytoscape 3: challenges and solutions. F1000research. 3: 150. PMID 25075307 DOI: 10.12688/f1000research.4546.1  0.72
2014 Dutkowski J, Ono K, Kramer M, Yu M, Pratt D, Demchak B, Ideker T. NeXO Web: the NeXO ontology database and visualization platform. Nucleic Acids Research. 42: D1269-74. PMID 24271398 DOI: 10.1093/nar/gkt1192  0.72
2013 Altschul S, Demchak B, Durbin R, Gentleman R, Krzywinski M, Li H, Nekrutenko A, Robinson J, Rasband W, Taylor J, Trapnell C. The anatomy of successful computational biology software. Nature Biotechnology. 31: 894-7. PMID 24104757 DOI: 10.1038/nbt.2721  0.72
2012 Demchak B, Krüger I. Policy Driven Development: Flexible Policy Insertion for Large Scale Systems. Proceedings. Ieee International Symposium On Policies For Distributed Systems and Networks. 2012: 17-24. PMID 25383258 DOI: 10.1109/POLICY.2012.13  0.72
2012 Krüger I, Demchak B, Menarini M. Dynamic Service Composition and Deployment with OpenRichServices Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 7365: 120-146. DOI: 10.1007/978-3-642-30835-2-9  0.72
2011 Demchak B, Kerr J, Raab F, Patrick K, Krüger IH. PALMS: A modern coevolution of community and computing using policy driven development Proceedings of the Annual Hawaii International Conference On System Sciences. 2735-2744. DOI: 10.1109/HICSS.2012.464  0.72
2008 Demchak B, Ermagan V, Farcas C, Farcas E, Krüger IH, Menarini M. Rich services: Addressing challenges of ultra-large-scale software-intensive systems International Conference On Software Engineering - Proceedings of the 2nd International Workshop On Ultra-Large-Scale Software-Intensive Systems, Ulssis'08. 29-32. DOI: 10.1145/1370700.1370709  0.72
2008 Demchak B, Ermagan V, Farcas E, Huang TJ, Krüger IH, Menarini M. A rich services approach to CoCoME Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5153: 85-115. DOI: 10.1007/978-3-540-85289-6_5  0.72
2008 Demchak B, Krüger IH. Rich feeds for RESCUE Proceedings of Iscram 2008 - 5th International Conference On Information Systems For Crisis Response and Management. 566-575.  0.72
2007 Demchak B, Griswold WG, Lenert LA. Data quality for situational awareness during mass-casualty events. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 176-80. PMID 18693821  0.72
2007 Demchak B, Farcas C, Farcas E, Krüger IH. The treasure map for Rich Services 2007 Ieee International Conference On Information Reuse and Integration, Ieee Iri-2007. 400-405. DOI: 10.1109/IRI.2007.4296653  0.72
2007 Arrott M, Demchak B, Ermagan V, Farcas C, Farcas E, Krüger IH, Menarini M. Rich services: The integration piece of the SOA puzzle Proceedings - 2007 Ieee International Conference On Web Services, Icws 2007. 176-183. DOI: 10.1109/ICWS.2007.155  0.72
2006 Demchak B, Chan TC, Griswold WG, Lenert LA. Situational awareness during mass-casualty events: command and control. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 905. PMID 17238524  0.72
2006 Brown SW, Griswold WG, Demchak B, Lenert LA. Middleware for reliable mobile medical workflow support in disaster settings. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 309-13. PMID 17238353  0.72
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