Onur Afacan, Ph.D. - Publications

Affiliations: 
2011 Electrical and Computer Engineering Northeastern University, Boston, MA, United States 
Area:
Radiology, Electronics and Electrical Engineering

59 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Sui Y, Afacan O, Gholipour A, Warfield SK. Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 12262: 136-146. PMID 33163994 DOI: 10.1007/978-3-030-59713-9_14  0.44
2020 Coll-Font J, Afacan O, Chow JS, Lee RS, Warfield SK, Kurugol S. Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Medical Image Analysis. 67: 101880. PMID 33147561 DOI: 10.1016/j.media.2020.101880  0.44
2020 Rollins Md Sm CK, Ortinau CM, Stopp C, Friedman KG, Tworetzky W, Gagoski B, Velasco-Annis C, Afacan O, Vasung L, Beaute JI, Rofeberg V, Estroff JA, Grant PE, Soul Mdcm JS, Yang E, et al. Regional brain growth trajectories in fetuses with congenital heart disease. Annals of Neurology. PMID 33084086 DOI: 10.1002/ana.25940  0.44
2020 Wallace TE, Polimeni JR, Stockmann JP, Hoge WS, Kober T, Warfield SK, Afacan O. Dynamic distortion correction for functional MRI using FID navigators. Magnetic Resonance in Medicine. PMID 32970869 DOI: 10.1002/mrm.28505  0.44
2020 Sui Y, Afacan O, Gholipour A, Warfield SK. SLIMM: Slice localization integrated MRI monitoring. Neuroimage. 223: 117280. PMID 32853815 DOI: 10.1016/j.neuroimage.2020.117280  0.44
2020 Campanale CM, Scherrer B, Afacan O, Majeed A, Warfield SK, Sanders SP. Myofiber organization in the failing systemic right ventricle. Journal of Cardiovascular Magnetic Resonance : Official Journal of the Society For Cardiovascular Magnetic Resonance. 22: 49. PMID 32600420 DOI: 10.1186/s12968-020-00637-9  0.44
2020 Ahtam B, Waisbren SE, Anastasoaie V, Berry GT, Brown M, Petrides S, Afacan O, Prabhu SP, Schomer D, Grant PE, Greenstein PE. Identification of Neuronal Structures and Pathways Corresponding to Clinical Functioning in Galactosemia. Journal of Inherited Metabolic Disease. PMID 32592186 DOI: 10.1002/jimd.12279  0.4
2020 Afacan O, Hoge WS, Wallace TE, Gholipour A, Kurugol S, Warfield SK. Simultaneous Motion and Distortion Correction Using Dual-Echo Diffusion-Weighted MRI. Journal of Neuroimaging : Official Journal of the American Society of Neuroimaging. PMID 32374453 DOI: 10.1111/jon.12708  0.44
2020 Jaimes C, Machado-Rivas F, Afacan O, Khan S, Marami B, Ortinau CM, Rollins CK, Velasco-Annis C, Warfield SK, Gholipour A. In vivo characterization of emerging white matter microstructure in the fetal brain in the third trimester. Human Brain Mapping. PMID 32374063 DOI: 10.1002/hbm.25006  0.44
2020 Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Correction to: Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to Tc DTPA. Pediatric Radiology. PMID 32170349 DOI: 10.1007/s00247-020-04654-9  0.44
2020 Kurugol S, Afacan O, Lee RS, Seager CM, Ferguson MA, Stein DR, Nichols RC, Dugan M, Stemmer A, Warfield SK, Chow JS. Prospective pediatric study comparing glomerular filtration rate estimates based on motion-robust dynamic contrast-enhanced magnetic resonance imaging and serum creatinine (eGFR) to Tc DTPA. Pediatric Radiology. PMID 31984436 DOI: 10.1007/s00247-020-04617-0  0.44
2019 Sui Y, Afacan O, Gholipour A, Warfield SK. Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11766: 3-11. PMID 32832937 DOI: 10.1007/978-3-030-32248-9_1  0.44
2019 Coll-Font J, Afacan O, Chow J, Kurugol S. Linear Time Invariant Model based Motion Correction (LiMo-MoCo) of Dynamic Radial Contrast Enhanced MRI. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11765: 430-437. PMID 32483560 DOI: 10.1007/978-3-030-32245-8_48  0.36
2019 Kurugol S, Seager CM, Thaker H, Coll-Font J, Afacan O, Nichols RC, Warfield SK, Lee RS, Chow JS. Feed and wrap magnetic resonance urography provides anatomic and functional imaging in infants without anesthesia. Journal of Pediatric Urology. PMID 31889687 DOI: 10.1016/j.jpurol.2019.11.002  0.44
2019 Coll-Font J, Afacan O, Chow JS, Lee RS, Stemmer A, Warfield SK, Kurugol S. Bulk motion-compensated DCE-MRI for functional imaging of kidneys in newborns. Journal of Magnetic Resonance Imaging : Jmri. PMID 31837071 DOI: 10.1002/jmri.27021  0.44
2019 Afacan O, Estroff JA, Yang E, Barnewolt CE, Connolly SA, Parad RB, Mulkern RV, Warfield SK, Gholipour A. Fetal Echoplanar Imaging: Promises and Challenges. Topics in Magnetic Resonance Imaging : Tmri. 28: 245-254. PMID 31592991 DOI: 10.1097/RMR.0000000000000219  0.44
2019 Wallace TE, Afacan O, Kober T, Warfield SK. Rapid measurement and correction of spatiotemporal B field changes using FID navigators and a multi-channel reference image. Magnetic Resonance in Medicine. PMID 31463976 DOI: 10.1002/mrm.27957  0.44
2019 Afacan O, Wallace TE, Warfield SK. Retrospective correction of head motion using measurements from an electromagnetic tracker. Magnetic Resonance in Medicine. PMID 31400036 DOI: 10.1002/mrm.27934  0.44
2019 Peters JM, Struyven RR, Prohl AK, Vasung L, Stajduhar A, Taquet M, Bushman JJ, Lidov H, Singh JM, Scherrer B, Madsen JR, Prabhu SP, Sahin M, Afacan O, Warfield SK. White matter mean diffusivity correlates with myelination in tuberous sclerosis complex. Annals of Clinical and Translational Neurology. 6: 1178-1190. PMID 31353853 DOI: 10.1002/acn3.793  0.44
2019 Cole AR, Perry DA, Raza A, Nedder AP, Pollack E, Regan WL, van den Bosch SJ, Polizzotti BD, Yang E, Davila D, Afacan O, Warfield SK, Ou Y, Sefton B, Everett AD, et al. Perioperatively Inhaled Hydrogen Gas Diminishes Neurologic Injury Following Experimental Circulatory Arrest in Swine. Jacc. Basic to Translational Science. 4: 176-187. PMID 31061920 DOI: 10.1016/j.jacbts.2018.11.006  0.44
2018 Khan S, Rollins CK, Ortinau CM, Afacan O, Warfield SK, Gholipour A. Tract-Specific Group Analysis in Fetal Cohorts Using Diffusion Tensor Imaging. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 11072: 28-35. PMID 32869014 DOI: 10.1007/978-3-030-00931-1_4  0.44
2018 Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magnetic Resonance in Medicine. PMID 30443929 DOI: 10.1002/mrm.27613  0.44
2018 Ortinau CM, Rollins CK, Gholipour A, Yun HJ, Marshall M, Gagoski B, Afacan O, Friedman K, Tworetzky W, Warfield SK, Newburger JW, Inder TE, Grant PE, Im K. Early-Emerging Sulcal Patterns Are Atypical in Fetuses with Congenital Heart Disease. Cerebral Cortex (New York, N.Y. : 1991). PMID 30272144 DOI: 10.1093/cercor/bhy235  0.44
2018 Khan S, Vasung L, Marami B, Rollins CK, Afacan O, Ortinau CM, Yang E, Warfield SK, Gholipour A. Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. Neuroimage. PMID 30172006 DOI: 10.1016/j.neuroimage.2018.08.030  0.44
2018 Wallace TE, Afacan O, Waszak M, Kober T, Warfield SK. Head motion measurement and correction using FID navigators. Magnetic Resonance in Medicine. PMID 30058216 DOI: 10.1002/mrm.27381  0.44
2018 Martinot AJ, Abbink P, Afacan O, Prohl AK, Bronson R, Hecht JL, Borducchi EN, Larocca RA, Peterson RL, Rinaldi W, Ferguson M, Didier PJ, Weiss D, Lewis MG, De La Barrera RA, et al. Fetal Neuropathology in Zika Virus-Infected Pregnant Female Rhesus Monkeys. Cell. PMID 29606355 DOI: 10.1016/j.cell.2018.03.019  0.44
2017 Kurugol S, Marami B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. Molecular Imaging, Reconstruction and Analysis of Moving Body Organs, and Stroke Imaging and Treatment : Fifth International Workshop, Cmmi 2017, Second International Workshop, Rambo 2017, and First International Workshop, Switch 2017, .... 10555: 75-85. PMID 29457154 DOI: 10.1007/978-3-319-67564-0_8  0.44
2017 Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Medical Image Analysis. 39: 124-132. PMID 28494271 DOI: 10.1016/j.media.2017.04.006  0.44
2017 Marami B, Salehi SSM, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal Slice Registration and Robust Diffusion-Tensor Reconstruction for Improved Fetal Brain Structural Connectivity Analysis. Neuroimage. PMID 28433624 DOI: 10.1016/j.neuroimage.2017.04.033  0.44
2017 Gholipour A, Rollins CK, Velasco-Annis C, Ouaalam A, Akhondi-Asl A, Afacan O, Ortinau CM, Clancy S, Limperopoulos C, Yang E, Estroff JA, Warfield SK. A normative spatiotemporal MRI atlas of the fetal brain for automatic segmentation and analysis of early brain growth. Scientific Reports. 7: 476. PMID 28352082 DOI: 10.1038/s41598-017-00525-w  0.44
2016 Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9902: 544-552. PMID 28127590 DOI: 10.1007/978-3-319-46726-9_63  0.44
2016 Marami B, Scherrer B, Afacan O, Erem B, Warfield S, Gholipour A. Motion-robust diffusion-weighted brain MRI reconstruction through slice-level registration-based motion tracking. Ieee Transactions On Medical Imaging. PMID 28113889 DOI: 10.1109/TMI.2016.2555244  0.44
2016 Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. Ieee Transactions On Medical Imaging. 35: 2258-2269. PMID 27834639 DOI: 10.1109/TMI.2016.2555244  0.44
2016 Hesper T, Bulat E, Bixby S, Akhondi-Asl A, Afacan O, Miller P, Bowen G, Warfield S, Kim YJ. Both 3-T dGEMRIC and Acetabular-Femoral T2 Difference May Detect Cartilage Damage at the Chondrolabral Junction. Clinical Orthopaedics and Related Research. PMID 27807678 DOI: 10.1007/s11999-016-5136-1  0.36
2016 Afacan O, Erem B, Roby DP, Roth N, Roth A, Prabhu SP, Warfield SK. Evaluation of motion and its effect on brain magnetic resonance image quality in children. Pediatric Radiology. PMID 27488508 DOI: 10.1007/s00247-016-3677-9  0.4
2016 Afacan O, Gholipour A, Mulkern RV, Barnewolt CE, Estroff JA, Connolly SA, Parad RB, Bairdain S, Warfield SK. Fetal lung apparent diffusion coefficient measurement using diffusion-weighted MRI at 3 Tesla: Correlation with gestational age. Journal of Magnetic Resonance Imaging : Jmri. PMID 27159847 DOI: 10.1002/jmri.25294  0.4
2016 Kurugol S, Freiman M, Afacan O, Perez-Rossello JM, Callahan MJ, Warfield SK. Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Medical Image Analysis. 32: 173-183. PMID 27111049 DOI: 10.1016/j.media.2016.03.009  0.4
2016 Pier DB, Gholipour A, Afacan O, Velasco-Annis C, Clancy S, Kapur K, Estroff JA, Warfield SK. 3D Super-Resolution Motion-Corrected MRI: Validation of Fetal Posterior Fossa Measurements. Journal of Neuroimaging : Official Journal of the American Society of Neuroimaging. PMID 26990618 DOI: 10.1111/jon.12342  0.4
2015 Stamm A, Singh J, Afacan O, Warfield SK. Analytic quantification of bias and variance of coil sensitivity profile estimators for improved image reconstruction in MRI. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9350: 684-691. PMID 28553674 DOI: 10.1007/978-3-319-24571-3_82  0.44
2015 Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Medical Physics. 42: 6919. PMID 26632048 DOI: 10.1118/1.4935149  0.4
2015 Kurugol S, Freiman M, Afacan O, Domachevsky L, Perez-Rossello JM, Callahan MJ, Warfield SK. Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 9351: 501-509. PMID 26550612 DOI: 10.1007/978-3-319-24574-4_60  0.4
2015 Akhondi-Asl A, Afacan O, Balasubramanian M, Mulkern RV, Warfield SK. Fast myelin water fraction estimation using 2D multislice CPMG. Magnetic Resonance in Medicine. PMID 26536382 DOI: 10.1002/mrm.26034  0.4
2015 Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Information Processing in Medical Imaging : Proceedings of the ... Conference. 24: 69-81. PMID 26167096 DOI: 10.1007/978-3-319-19992-4_6  0.4
2015 Taimouri V, Afacan O, Perez-Rossello JM, Callahan MJ, Mulkern RV, Warfield SK, Freiman M. Spatially constrained incoherent motion method improves diffusion-weighted MRI signal decay analysis in the liver and spleen. Medical Physics. 42: 1895-903. PMID 25832079 DOI: 10.1118/1.4915495  0.44
2015 Velasco-Annis C, Gholipour A, Afacan O, Prabhu SP, Estroff JA, Warfield SK. Normative biometrics for fetal ocular growth using volumetric MRI reconstruction. Prenatal Diagnosis. 35: 400-8. PMID 25601041 DOI: 10.1002/pd.4558  0.4
2015 Stamm A, Singh JM, Scherrer B, Afacan O, Warfield SK. Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9413. DOI: 10.1117/12.2082493  0.4
2015 Scherrer B, Afacan O, Stamm A, Singh J, Warfield SK. Optimized magnetic resonance diffusion protocol for ex-vivo whole human brain imaging with a clinical scanner Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9412. DOI: 10.1117/12.2082387  0.4
2015 Stamm A, Singh J, Afacan O, Warfield SK. Analytic quantification of bias and variance of coil sensitivity profile estimators for improved image reconstruction in MRI Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 9350: 684-691. DOI: 10.1007/978-3-319-24571-3_82  0.4
2014 Gholipour A, Estroff JA, Barnewolt CE, Robertson RL, Grant PE, Gagoski B, Warfield SK, Afacan O, Connolly SA, Neil JJ, Wolfberg A, Mulkern RV. Fetal MRI: A Technical Update with Educational Aspirations. Concepts in Magnetic Resonance. Part a, Bridging Education and Research. 43: 237-266. PMID 26225129 DOI: 10.1002/cmr.a.21321  0.4
2014 Akhondi-Asl A, Afacan O, Mulkern RV, Warfield SK. T2-relaxometry for myelin water fraction xtraction using wald distribution and extended phase graph. Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 17: 145-52. PMID 25320793  0.4
2014 Kurugol S, Freiman M, Afacan O, Perez-Rossello JM, Callahan MJ, Warfield SK. Spatially-constrained probability distribution model of incoherent motion (SPIM) in diffusion weighted MRI signals of crohn’s disease Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8676: 117-127. DOI: 10.1007/978-3-319-13692-9_11  0.4
2014 Akhondi-Asl A, Afacan O, Mulkern RV, Warfield SK. T2-relaxometry for myelin water fraction extraction using wald distribution and extended phase graph Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8675: 145-152. DOI: 10.1007/978-3-319-10443-0_19  0.4
2013 Freiman M, Afacan O, Mulkern RV, Warfield SK. Improved multi B-value diffusion-weighted MRI of the body by simultaneous model estimation and image reconstruction (SMEIR). Medical Image Computing and Computer-Assisted Intervention : Miccai ... International Conference On Medical Image Computing and Computer-Assisted Intervention. 16: 1-8. PMID 24505737 DOI: 10.1007/978-3-642-40760-4_1  0.4
2013 Taimouri V, Freiman M, Afacan O, Warfield SK. Spatially constrained incoherent motion (SCIM) model improves quantitative diffusion-weighted MRI analysis of Crohn's disease patients Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8198: 11-19. DOI: 10.1007/978-3-642-41083-3_2  0.4
2012 Afacan O, Hoge WS, Janoos F, Brooks DH, Morocz IA. Rapid full-brain fMRI with an accelerated multi shot 3D EPI sequence using both UNFOLD and GRAPPA. Magnetic Resonance in Medicine : Official Journal of the Society of Magnetic Resonance in Medicine / Society of Magnetic Resonance in Medicine. 67: 1266-74. PMID 22095768 DOI: 10.1002/mrm.23106  0.4
2011 Ferris CF, Smerkers B, Kulkarni P, Caffrey M, Afacan O, Toddes S, Stolberg T, Febo M. Functional magnetic resonance imaging in awake animals. Reviews in the Neurosciences. 22: 665-74. PMID 22098446 DOI: 10.1515/RNS.2011.050  0.4
2009 Afacan O, Hoge S, Brooks DH, Mórocz IA. Increasing temporal resolution in hybrid 3D EPI FMRI studies using unfold Proceedings - 2009 Ieee International Symposium On Biomedical Imaging: From Nano to Macro, Isbi 2009. 654-657. DOI: 10.1109/ISBI.2009.5193132  0.4
2007 Mitsouras D, Mulkern RV, Afacan O, Brooks DH, Rybicki FJ. Basis function cross-correlations for robust k-space sample density compensation, with application to the design of radiofrequency excitations. Magnetic Resonance in Medicine. 57: 338-52. PMID 17260377 DOI: 10.1002/mrm.21125  0.4
2007 Afacan O, Mitsouras D, Brooks DH, Mulkern RV, Rybicki FJ. Comparing MR imaging properties of spiral trajectories using the singular spectrum of the analytical fourier basis cross-correlation matrix 2007 4th Ieee International Symposium On Biomedical Imaging: From Nano to Macro - Proceedings. 1080-1083. DOI: 10.1109/ISBI.2007.357043  0.4
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