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Jacqueline M. Dresch, Ph.D. - Publications

Affiliations: 
2012 Mathematics Michigan State University, East Lansing, MI 
Area:
Applied Mathematics, Molecular Biology, Genetics
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Dresch JM, Conrad RD, Klonaros D, Drewell RA. Investigating the sequence landscape in the initiator core promoter element using an enhanced MARZ algorithm. Peerj. 11: e15597. PMID 37366427 DOI: 10.7717/peerj.15597  0.305
2023 Klonaros D, Dresch JM, Drewell RA. Transcriptome profile in Drosophila Kc and S2 embryonic cell lines. G3 (Bethesda, Md.). PMID 36869676 DOI: 10.1093/g3journal/jkad054  0.31
2019 McCarthy GD, Drewell RA, Dresch JM. Analyzing the stability of gene expression using a simple reaction-diffusion model in an early Drosophila embryo. Mathematical Biosciences. 108239. PMID 31454629 DOI: 10.1016/J.Mbs.2019.108239  0.525
2019 Orlomoski R, Bogle A, Loss J, Simons R, Dresch JM, Drewell RA, Spratt DE. Rapid and efficient purification of Drosophila homeodomain transcription factors for biophysical characterization. Protein Expression and Purification. PMID 30738927 DOI: 10.1016/J.Pep.2019.02.001  0.451
2017 Elmas A, Wang X, Dresch JM. The folded k-spectrum kernel: A machine learning approach to detecting transcription factor binding sites with gapped nucleotide dependencies. Plos One. 12: e0185570. PMID 28982128 DOI: 10.1371/Journal.Pone.0185570  0.535
2016 Dresch JM, Zellers RG, Bork DK, Drewell RA. Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome. Gene Regulation and Systems Biology. 10: 21-33. PMID 27330274 DOI: 10.4137/Grsb.S38462  0.513
2016 Pettie KP, Dresch JM, Drewell RA. Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks. Mechanisms of Development. PMID 27264535 DOI: 10.1016/J.Mod.2016.06.001  0.496
2016 Sayal R, Dresch JM, Pushel I, Taylor BR, Arnosti DN. Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo. Elife. 5. PMID 27152947 DOI: 10.7554/Elife.08445  0.736
2016 Sayal R, Dresch JM, Pushel I, Taylor BR, Arnosti DN. Author response: Quantitative perturbation-based analysis of gene expression predicts enhancer activity in early Drosophila embryo Elife. DOI: 10.7554/Elife.08445.028  0.715
2015 Dresch JM, Arnosti DN. The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code? Cell Systems. 1: 379-380. PMID 27136351 DOI: 10.1016/J.Cels.2015.12.006  0.677
2015 McCarthy GD, Drewell RA, Dresch JM. Global sensitivity analysis of a dynamic model for gene expression in Drosophila embryos. Peerj. 3: e1022. PMID 26157608 DOI: 10.7717/Peerj.1022  0.56
2015 Zellers RG, Drewell RA, Dresch JM. MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding. Bmc Bioinformatics. 16: 30. PMID 25637281 DOI: 10.1186/S12859-014-0446-3  0.533
2015 Dresch JM, Arnosti DN. The Wisdom of Crowds: Can Mathematical Models Crack the cis Regulatory Code? Cell Systems. 1: 379-380. DOI: 10.1016/j.cels.2015.12.006  0.591
2014 Drewell RA, Nevarez MJ, Kurata JS, Winkler LN, Li L, Dresch JM. Deciphering the combinatorial architecture of a Drosophila homeotic gene enhancer. Mechanisms of Development. 131: 68-77. PMID 24514265 DOI: 10.1016/J.Mod.2013.10.002  0.587
2013 Dresch JM, Thompson MA, Arnosti DN, Chiu C. TWO-LAYER MATHEMATICAL MODELING OF GENE EXPRESSION: INCORPORATING DNA-LEVEL INFORMATION AND SYSTEM DYNAMICS. Siam Journal On Applied Mathematics. 73: 804-826. PMID 25328249 DOI: 10.1137/120887588  0.786
2013 Stringham JL, Brown AS, Drewell RA, Dresch JM. Flanking sequence context-dependent transcription factor binding in early Drosophila development. Bmc Bioinformatics. 14: 298. PMID 24093548 DOI: 10.1186/1471-2105-14-298  0.52
2013 Suleimenov Y, Ay A, Samee MA, Dresch JM, Sinha S, Arnosti DN. Global parameter estimation for thermodynamic models of transcriptional regulation. Methods (San Diego, Calif.). 62: 99-108. PMID 23726942 DOI: 10.1016/J.Ymeth.2013.05.012  0.749
2013 Dresch JM, Richards M, Ay A. A primer on thermodynamic-based models for deciphering transcriptional regulatory logic. Biochimica Et Biophysica Acta. 1829: 946-53. PMID 23643643 DOI: 10.1016/J.Bbagrm.2013.04.011  0.744
2012 Chiu C, Fakhouri W, Liu N, Dayringer E, Dresch J, Arnosti D. A two-scale mathematical model for DNA transcription. Mathematical Biosciences. 236: 132-40. PMID 22343054 DOI: 10.1016/J.Mbs.2011.12.006  0.764
2010 Dresch JM, Liu X, Arnosti DN, Ay A. Thermodynamic modeling of transcription: sensitivity analysis differentiates biological mechanism from mathematical model-induced effects. Bmc Systems Biology. 4: 142. PMID 20969803 DOI: 10.1186/1752-0509-4-142  0.748
2010 Fakhouri WD, Ay A, Sayal R, Dresch J, Dayringer E, Arnosti DN. Deciphering a transcriptional regulatory code: modeling short-range repression in the Drosophila embryo. Molecular Systems Biology. 6: 341. PMID 20087339 DOI: 10.1038/Msb.2009.97  0.671
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