| Year |
Citation |
Score |
| 2022 |
Du J, Vandavasi VG, Molloy KR, Yang H, Massenburg LN, Singh A, Kwansa AL, Yingling YG, O'Neill H, Chait BT, Kumar M, Nixon BT. Evidence for Plant-Conserved Region Mediated Trimeric CESAs in Plant Cellulose Synthase Complexes. Biomacromolecules. PMID 35948425 DOI: 10.1021/acs.biomac.2c00550 |
0.311 |
|
| 2020 |
Kim HS, Brown NA, Zauscher S, Yingling YG. Effect of octadecylamine surfactant on DNA interactions with graphene surfaces. Langmuir : the Acs Journal of Surfaces and Colloids. PMID 31917584 DOI: 10.1021/Acs.Langmuir.9B02926 |
0.321 |
|
| 2020 |
Singh A, Kwansa AL, Kim HS, Williams JT, Yang H, Li NK, Kubicki JD, Roberts AW, Haigler CH, Yingling YG. In silico structure prediction of full-length cotton cellulose synthase protein (GhCESA1) and its hierarchical complexes Cellulose. 27: 5597-5616. DOI: 10.1007/S10570-020-03194-7 |
0.423 |
|
| 2019 |
Brabham C, Singh A, Stork J, Rong Y, Kumar I, Kikuchi K, Yingling YG, Brutnell TP, Rose JKC, Debolt S. Biochemical and physiological flexibility accompanies reduced cellulose biosynthesis in Brachypodium . Aob Plants. 11: plz041. PMID 31636881 DOI: 10.1093/Aobpla/Plz041 |
0.419 |
|
| 2019 |
Yang H, McManus JB, Oehme D, Singh A, Yingling YG, Tien M, Kubicki JD. Simulations of Cellulose Synthesis Initiation and Termination in Bacteria. The Journal of Physical Chemistry. B. PMID 30983346 DOI: 10.1021/Acs.Jpcb.9B02433 |
0.315 |
|
| 2018 |
Gu R, Oweida T, Yingling YG, Chilkoti A, Zauscher S. Enzymatic synthesis of nucleobase-modified single-stranded DNA offers tunable resistance to nuclease degradation. Biomacromolecules. PMID 30011192 DOI: 10.1021/Acs.Biomac.8B00816 |
0.303 |
|
| 2018 |
Li NK, Roberts S, Quiroz FG, Chilkoti A, Yingling YG. Sequence directionality dramatically affects LCST behavior of elastin-like polypeptides. Biomacromolecules. PMID 29665334 DOI: 10.1021/Acs.Biomac.8B00099 |
0.347 |
|
| 2018 |
Scavuzzo-Duggan TR, Chaves AM, Singh A, Sethaphong L, Slabaugh E, Yingling YG, Haigler CH, Roberts AW. Cellulose synthase 'class specific regions' are intrinsically disordered and functionally undifferentiated. Journal of Integrative Plant Biology. PMID 29380536 DOI: 10.1111/Jipb.12637 |
0.752 |
|
| 2017 |
Xiong R, Kim HS, Zhang S, Kim S, Korolovych VF, Ma R, Yingling YG, Lu C, Tsukruk VV. Template-Guided Assembly of Silk Fibroin on Cellulose Nanofibers for Robust Nanostructures with Ultrafast Water Transport. Acs Nano. PMID 29131636 DOI: 10.1021/Acsnano.7B04235 |
0.352 |
|
| 2017 |
Li NK, Kuang H, Fuss WH, Zauscher S, Kokkoli E, Yingling YG. Salt Responsive Morphologies of ssDNA-Based Triblock Polyelectrolytes in Semi-Dilute Regime: Effect of Volume Fractions and Polyelectrolyte Length. Macromolecular Rapid Communications. PMID 28895249 DOI: 10.1002/Marc.201700422 |
0.316 |
|
| 2017 |
Peerless JS, Bowers GH, Kwansa AL, Yingling YG. Effect of C 60 adducts on the dynamic structure of aromatic solvation shells Chemical Physics Letters. 678: 79-84. DOI: 10.1016/J.Cplett.2017.04.010 |
0.336 |
|
| 2016 |
Nash JA, Tucker TL, Therriault W, Yingling YG. Binding of single stranded nucleic acids to cationic ligand functionalized gold nanoparticles. Biointerphases. 11: 04B305. PMID 27835922 DOI: 10.1116/1.4966653 |
0.352 |
|
| 2016 |
Nixon BT, Mansouri K, Singh A, Du J, Davis JK, Lee JG, Slabaugh E, Vandavasi VG, O'Neill H, Roberts EM, Roberts AW, Yingling YG, Haigler CH. Comparative Structural and Computational Analysis Supports Eighteen Cellulose Synthases in the Plant Cellulose Synthesis Complex. Scientific Reports. 6: 28696. PMID 27345599 DOI: 10.1038/Srep28696 |
0.31 |
|
| 2016 |
Kim HS, Eom D, Koo YM, Yingling YG. The effect of imidazolium cations on the structure and activity of the Candida antarctica Lipase B enzyme in ionic liquids. Physical Chemistry Chemical Physics : Pccp. PMID 27306260 DOI: 10.1039/C6Cp02355J |
0.367 |
|
| 2016 |
Rangnekar A, Nash JA, Goodfred B, Yingling YG, LaBean TH. Design of Potent and Controllable Anticoagulants Using DNA Aptamers and Nanostructures. Molecules (Basel, Switzerland). 21. PMID 26861277 DOI: 10.3390/Molecules21020202 |
0.304 |
|
| 2016 |
Kim HS, Huang SM, Yingling YG. Sequence dependent interaction of single stranded DNA with graphitic flakes: atomistic molecular dynamics simulations Mrs Advances. 1: 1883-1889. DOI: 10.1557/Adv.2016.91 |
0.326 |
|
| 2016 |
Sethaphong L, Davis JK, Slabaugh E, Singh A, Haigler CH, Yingling YG. Prediction of the structures of the plant-specific regions of vascular plant cellulose synthases and correlated functional analysis Cellulose. 23: 145-161. DOI: 10.1007/S10570-015-0789-6 |
0.765 |
|
| 2016 |
Grant AM, Kim HS, Dupnock TL, Hu K, Yingling YG, Tsukruk VV. Silk Fibroin-Substrate Interactions at Heterogeneous Nanocomposite Interfaces Advanced Functional Materials. DOI: 10.1002/Adfm.201601268 |
0.322 |
|
| 2015 |
Hrmova M, Nagarajan Y, Rongala J, Luang S, Singh A, Shadiac N, Hayes J, Sutton T, Gilliham M, Tyerman S, McPhee G, Voelcker NH, Mertens HD, Kirby N, Lee JG, ... Yingling YG, et al. Na+-Dependent Anion Transport by a Barley Efflux Protein Revealed through an Integrative Platform. The Plant Cell. PMID 26672067 DOI: 10.1105/Tpc.15.00625 |
0.357 |
|
| 2015 |
Peerless JS, Bowers GH, Kwansa AL, Yingling YG. Fullerenes in Aromatic Solvents: Correlation between Solvation-Shell Structure, Solvate Formation, and Solubility. The Journal of Physical Chemistry. B. 119: 15344-52. PMID 26560403 DOI: 10.1021/Acs.Jpcb.5B09386 |
0.377 |
|
| 2015 |
Nash JA, Singh A, Li NK, Yingling YG. Characterization of Nucleic Acid Compaction with Histone-Mimic Nanoparticles through All-Atom Molecular Dynamics. Acs Nano. PMID 26522008 DOI: 10.1021/Acsnano.5B05684 |
0.316 |
|
| 2015 |
Li NK, Fuss WH, Tang L, Gu R, Chilkoti A, Zauscher S, Yingling YG. Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles. Soft Matter. PMID 26315065 DOI: 10.1039/C5Sm01742D |
0.313 |
|
| 2015 |
Yang H, Zimmer J, Yingling YG, Kubicki JD. How Cellulose Elongates-A QM/MM Study of the Molecular Mechanism of Cellulose Polymerization in Bacterial CESA. The Journal of Physical Chemistry. B. 119: 6525-35. PMID 25942604 DOI: 10.1021/Acs.Jpcb.5B01433 |
0.308 |
|
| 2015 |
Li NK, Fuss WH, Yingling YG. An Implicit Solvent Ionic Strength (ISIS) method to model polyelectrolyte systems with dissipative particle dynamics Macromolecular Theory and Simulations. 24: 7-12. DOI: 10.1002/Mats.201400043 |
0.31 |
|
| 2014 |
Slabaugh E, Sethaphong L, Xiao C, Amick J, Anderson CT, Haigler CH, Yingling YG. Computational and genetic evidence that different structural conformations of a non-catalytic region affect the function of plant cellulose synthase. Journal of Experimental Botany. 65: 6645-53. PMID 25262226 DOI: 10.1093/Jxb/Eru383 |
0.767 |
|
| 2014 |
Li NK, García Quiroz F, Hall CK, Chilkoti A, Yingling YG. Molecular description of the LCST behavior of an elastin-like polypeptide. Biomacromolecules. 15: 3522-30. PMID 25142785 DOI: 10.1021/Bm500658W |
0.356 |
|
| 2014 |
Kim HS, Ha SH, Sethaphong L, Koo YM, Yingling YG. The relationship between enhanced enzyme activity and structural dynamics in ionic liquids: a combined computational and experimental study. Physical Chemistry Chemical Physics : Pccp. 16: 2944-53. PMID 24424278 DOI: 10.1039/C3Cp52516C |
0.75 |
|
| 2014 |
Slabaugh E, Davis JK, Haigler CH, Yingling YG, Zimmer J. Cellulose synthases: new insights from crystallography and modeling. Trends in Plant Science. 19: 99-106. PMID 24139443 DOI: 10.1016/J.Tplants.2013.09.009 |
0.391 |
|
| 2014 |
Kim HS, Yingling YG. Persistence Length of Single Stranded DNA: Effect of Length, Sequence and Surface Biophysical Journal. 106: 278a. DOI: 10.1016/J.Bpj.2013.11.1626 |
0.36 |
|
| 2013 |
Sethaphong L, Haigler CH, Kubicki JD, Zimmer J, Bonetta D, DeBolt S, Yingling YG. Tertiary model of a plant cellulose synthase. Proceedings of the National Academy of Sciences of the United States of America. 110: 7512-7. PMID 23592721 DOI: 10.1073/Pnas.1301027110 |
0.765 |
|
| 2013 |
Yi H, Thakur S, Sethaphong L, Yingling YG. X3DBio2: A visual analysis tool for biomolecular structure comparison Proceedings of Spie - the International Society For Optical Engineering. 8654. DOI: 10.1117/12.2002626 |
0.75 |
|
| 2013 |
Pani RC, Bond BD, Krishnan G, Yingling YG. Correlating fullerene diffusion with the polythiophene morphology: Molecular dynamics simulations Soft Matter. 9: 10048-10055. DOI: 10.1039/C3Sm51906F |
0.565 |
|
| 2013 |
Singh A, Li N, Yingling YG. Tuning DNA Bending with Charged Nanoparticles: Molecular Simulations Biophysical Journal. 104: 29a. DOI: 10.1016/J.Bpj.2012.11.196 |
0.3 |
|
| 2012 |
Railsback JG, Singh A, Pearce RC, McKnight TE, Collazo R, Sitar Z, Yingling YG, Melechko AV. Weakly charged cationic nanoparticles induce DNA bending and strand separation. Advanced Materials (Deerfield Beach, Fla.). 24: 4261-5. PMID 22711427 DOI: 10.1002/Adma.201104891 |
0.323 |
|
| 2012 |
Pani RC, Yingling YG. Role of solvent and dendritic architecture on the redox core encapsulation. The Journal of Physical Chemistry. A. 116: 7593-9. PMID 22698071 DOI: 10.1021/Jp304253G |
0.573 |
|
| 2012 |
Marlowe AE, Singh A, Yingling YG. The effect of point mutations on structure and mechanical properties of collagen-like fibril: A molecular dynamics study Materials Science and Engineering C. 32: 2583-2588. DOI: 10.1016/J.Msec.2012.07.044 |
0.311 |
|
| 2012 |
Kim HS, Pani R, Ha SH, Koo YM, Yingling YG. The role of hydrogen bonding in water-mediated glucose solubility in ionic liquids Journal of Molecular Liquids. 166: 25-30. DOI: 10.1016/J.Molliq.2011.11.008 |
0.554 |
|
| 2012 |
Singh A, Li N, Yingling YG. Interactions of Gold Nanoparticles with DNA: Interplay of Sequence, Ligands Charge and Polarity Biophysical Journal. 102: 638a. DOI: 10.1016/J.Bpj.2011.11.3474 |
0.308 |
|
| 2012 |
Singh A, Sethaphong L, Yingling YG. Structure Prediction of a Cellulose Synthase Protein and the Effect of Mutations Biophysical Journal. 102: 250a. DOI: 10.1016/J.Bpj.2011.11.1379 |
0.766 |
|
| 2011 |
Singh A, Sethaphong L, Yingling YG. Interactions of cations with RNA loop-loop complexes. Biophysical Journal. 101: 727-35. PMID 21806941 DOI: 10.1016/J.Bpj.2011.06.033 |
0.768 |
|
| 2011 |
Singh A, Yingling YG. Simulations of stretching single stranded DNA Materials Research Society Symposium Proceedings. 1301: 143-147. DOI: 10.1557/Opl.2011.569 |
0.343 |
|
| 2011 |
Singh A, Yingling YG. Molecular Dynamics Simulation Studies on the Hybridization Events of Surface Immobilized DNA Biophysical Journal. 100: 78a. DOI: 10.1016/J.Bpj.2010.12.635 |
0.328 |
|
| 2011 |
Sethaphong L, Yingling Y. Nucleic Acid Helical Conformation and Sequence Effects on Cationic Binding Biophysical Journal. 100: 77a-78a. DOI: 10.1016/J.Bpj.2010.12.631 |
0.776 |
|
| 2011 |
Vargas A, Sethaphong L, Yingling Y. Computational Prediction of Cellulose Synthase Protein Structure Biophysical Journal. 100: 205a. DOI: 10.1016/J.Bpj.2010.12.1334 |
0.759 |
|
| 2011 |
Marlowe AE, Yingling YG. Characterization of Osteogenesis Imperfecta Mutations in Type I Collagen: A Molecular Dynamics Study Biophysical Journal. 100: 150a. DOI: 10.1016/J.Bpj.2010.12.1029 |
0.308 |
|
| 2010 |
Sethaphong L, Singh A, Marlowe AE, Yingling YG. The sequence of HIV-1 TAR RNA helix controls cationic distribution Journal of Physical Chemistry C. 114: 5506-5512. DOI: 10.1021/Jp906147Q |
0.764 |
|
| 2010 |
Marlowe AE, Yingling YG. The Effect of Genetic Mutations on Structural and Mechanical Properties of Collagen: Molecular Dynamics Simulations Biophysical Journal. 98: 568a. DOI: 10.1016/J.Bpj.2009.12.3081 |
0.356 |
|
| 2010 |
Sethaphong L, Singh A, Marlowe AE, Yingling Y. Cationic Sequence Dependence in Nucleic Acid Structures Biophysical Journal. 98: 42a-43a. DOI: 10.1016/J.Bpj.2009.12.244 |
0.766 |
|
| 2010 |
Singh A, Sethaphong L, Yingling YG. Molecular Dynamics and Distribution of Ions in Kissing Loop Biophysical Journal. 98: 264a. DOI: 10.1016/J.Bpj.2009.12.1439 |
0.778 |
|
| 2009 |
Semichaevsky A, Singh A, Yingling YG. Computational Discovery Of The Electronegative Channel In RNA Loop-loop Interactions Biophysical Journal. 96: 83a. DOI: 10.1016/J.Bpj.2008.12.334 |
0.391 |
|
| 2009 |
Kasprzak WK, Yingling YG, Simon AE, Shapiro BA. Computational and Experimental Determination of the tRNA-like Structure in the 3′UTR of the Turnip Crinkle Virus (TCV) Biophysical Journal. 96: 19a-20a. DOI: 10.1016/J.Bpj.2008.12.1003 |
0.409 |
|
| 2008 |
Shapiro BA, Bindewald E, Kasprzak W, Yingling Y. Protocols for the in silico design of RNA nanostructures. Methods in Molecular Biology (Clifton, N.J.). 474: 93-115. PMID 19031063 DOI: 10.1007/978-1-59745-480-3_7 |
0.33 |
|
| 2008 |
Stupina VA, Meskauskas A, McCormack JC, Yingling YG, Shapiro BA, Dinman JD, Simon AE. The 3' proximal translational enhancer of Turnip crinkle virus binds to 60S ribosomal subunits. Rna (New York, N.Y.). 14: 2379-93. PMID 18824512 DOI: 10.1261/Rna.1227808 |
0.37 |
|
| 2008 |
McCormack JC, Yuan X, Yingling YG, Kasprzak W, Zamora RE, Shapiro BA, Simon AE. Structural domains within the 3' untranslated region of Turnip crinkle virus. Journal of Virology. 82: 8706-20. PMID 18579599 DOI: 10.1128/Jvi.00416-08 |
0.32 |
|
| 2008 |
Bindewald E, Hayes R, Yingling YG, Kasprzak W, Shapiro BA. RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. Nucleic Acids Research. 36: D392-7. PMID 17947325 DOI: 10.1093/Nar/Gkm842 |
0.38 |
|
| 2008 |
Semichaevsky AV, Marlowe AE, Yingling YG. Comparing ion distributions around RNA and DNA helical and loop-loop motifs Materials Research Society Symposium Proceedings. 1130: 56-61. DOI: 10.1557/Proc-1130-W05-05 |
0.4 |
|
| 2007 |
Yingling YG, Shapiro BA. Computational design of an RNA hexagonal nanoring and an RNA nanotube. Nano Letters. 7: 2328-34. PMID 17616164 DOI: 10.1021/Nl070984R |
0.331 |
|
| 2007 |
Shapiro BA, Yingling YG, Kasprzak W, Bindewald E. Bridging the gap in RNA structure prediction. Current Opinion in Structural Biology. 17: 157-65. PMID 17383172 DOI: 10.1016/J.Sbi.2007.03.001 |
0.379 |
|
| 2007 |
Yingling YG, Shapiro BA. The impact of dyskeratosis congenita mutations on the structure and dynamics of the human telomerase RNA pseudoknot domain. Journal of Biomolecular Structure & Dynamics. 24: 303-20. PMID 17206847 DOI: 10.1080/07391102.2007.10531238 |
0.418 |
|
| 2006 |
Yingling YG, Shapiro BA. The prediction of the wild-type telomerase RNA pseudoknot structure and the pivotal role of the bulge in its formation. Journal of Molecular Graphics & Modelling. 25: 261-74. PMID 16481205 DOI: 10.1016/J.Jmgm.2006.01.003 |
0.42 |
|
| 2005 |
Yingling YG, Shapiro BA. Dynamic behavior of the telomerase RNA hairpin structure and its relationship to dyskeratosis congenita. Journal of Molecular Biology. 348: 27-42. PMID 15808851 DOI: 10.1016/J.Jmb.2005.02.015 |
0.436 |
|
| 2003 |
Zhigilei LV, Yingling YG, Itina TE, Schoolcraft TA, Garrison BJ. Molecular dynamics simulations of matrix-assisted laser desorption - Connections to experiment International Journal of Mass Spectrometry. 226: 85-106. DOI: 10.1016/S1387-3806(02)00962-4 |
0.307 |
|
| 2003 |
Garrison BJ, Delcorte A, Zhigilei LV, Itina TE, Krantzman KD, Yingling YG, McQuaw CM, Smiley EJ, Winograd N. Big molecule ejection - SIMS vs. MALDI Applied Surface Science. 203: 69-71. DOI: 10.1016/S0169-4332(02)00661-X |
0.303 |
|
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