Masha Sosonkina - Publications

Affiliations: 
Electrical and Computer Engineering Iowa State University, Ames, IA, United States 
Area:
Computer Engineering

90 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any innacuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Fought EL, Sundriyal V, Sosonkina M, Windus TL. Saving time and energy with oversubscription and semi-direct Møller-Plesset second order perturbation methods. Journal of Computational Chemistry. 38: 830-841. PMID 28251680 DOI: 10.1002/jcc.24756  1
2016 Shirokov AM, Shin IJ, Kim Y, Sosonkina M, Maris P, Vary JP. N3LO NN interaction adjusted to light nuclei in ab exitu approach Physics Letters, Section B: Nuclear, Elementary Particle and High-Energy Physics. 761: 87-91. DOI: 10.1016/j.physletb.2016.08.006  1
2016 Carpentieri B, Liao J, Sosonkina M, Bonfiglioli A, Baars S. Using the VBARMS method in parallel computing Parallel Computing. 57: 197-211. DOI: 10.1016/j.parco.2016.01.005  1
2016 Sundriyal V, Sosonkina M. Joint frequency scaling of processor and DRAM Journal of Supercomputing. 72: 1549-1569. DOI: 10.1007/s11227-016-1680-4  1
2016 Sundriyal V, Windus TL, Fought E, Sosonkina M. Power profiling and evaluating the effect of frequency scaling on NWChem Simulation Series. 48: 138-145.  1
2015 Keipert K, Mitra G, Sunriyal V, Leang SS, Sosonkina M, Rendell AP, Gordon MS. Energy-Efficient Computational Chemistry: Comparison of x86 and ARM Systems. Journal of Chemical Theory and Computation. 11: 5055-61. PMID 26574303 DOI: 10.1021/acs.jctc.5b00713  1
2015 Baboulin M, Jamal A, Sosonkina M. Using random butterfly transformations in parallel schur complement-based preconditioning Proceedings of the 2015 Federated Conference On Computer Science and Information Systems, Fedcsis 2015. 649-654. DOI: 10.15439/2015F177  1
2015 Sosonkina M, Watson LT, He J. Remark on algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm DIRECT Acm Transactions On Mathematical Software. 41. DOI: 10.1145/2699459  1
2015 Lawson G, Sosonkina M, Shen Y. Changing CPU frequency in CoMD proxy application offloaded to Intel Xeon Phi co-processors Procedia Computer Science. 51: 100-109. DOI: 10.1016/j.procs.2015.05.207  1
2015 Oryspayev D, Aktulga HM, Sosonkina M, Maris P, Vary JP. Performance analysis of distributed symmetric sparse matrix vector multiplication algorithm for multi-core architectures Concurrency Computation. 27: 5019-5036. DOI: 10.1002/cpe.3499  1
2015 Ngatang I, Sosonkina M. Strategies to hide communication for a classical molecular dynamics proxy application Simulation Series. 47: 210-216.  1
2015 Watson LT, Weinbub J, Sosonkina M, Thacker WI, Rupp K. HPC' 15 Chairs' Message Simulation Series. 47.  1
2014 Carpentieri B, Liao J, Sosonkina M. Variable block algebraic recursive multilevel solver (VBARMS) for sparse linear systems Advances in Parallel Computing. 25: 163-172. DOI: 10.3233/978-1-61499-381-0-163  1
2014 Rémy A, Baboulin M, Sosonkina M, Rozoy B. Locality optimization on a NUMA architecture for hybrid LU factorization Advances in Parallel Computing. 25: 153-162. DOI: 10.3233/978-1-61499-381-0-153  1
2014 Vecharynski E, Saad Y, Sosonkina M. Graph partitioning using matrix values for preconditioning symmetric positive definite systems Siam Journal On Scientific Computing. 36: A63-A87. DOI: 10.1137/120898760  1
2014 Lawson G, Sosonkina M, Shen Y. Energy evaluation for applications with different thread affinities on the Intel xeon phi Proceedings - Symposium On Computer Architecture and High Performance Computing. 22: 54-59. DOI: 10.1109/SBAC-PADW.2014.12  1
2014 Lawson G, Sosonkina M, Shen Y. Performance and energy evaluation of CoMD on Intel Xeon Phi co-processors Proceedings of Co-Hpc 2014: 1st International Workshop On Hardware-Software Co-Design For High Performance Computing - Held in Conjunction With Sc 2014: the International Conference For High Performance Computing, Networking, Storage and Analysis. 49-54. DOI: 10.1109/Co-HPC.2014.12  1
2014 Ji H, Sosonkina M, Li Y. An implementation of block conjugate gradient algorithm on CPU-GPU processors Proceedings of Co-Hpc 2014: 1st International Workshop On Hardware-Software Co-Design For High Performance Computing - Held in Conjunction With Sc 2014: the International Conference For High Performance Computing, Networking, Storage and Analysis. 72-77. DOI: 10.1109/Co-HPC.2014.10  1
2014 Carpentieri B, Liao J, Sosonkina M. VBARMS: A variable block algebraic recursive multilevel solver for sparse linear systems Journal of Computational and Applied Mathematics. 259: 164-173. DOI: 10.1016/j.cam.2013.04.036  1
2014 Sundriyal V, Sosonkina M, Zhang Z. Automatic runtime frequency-scaling system for energy savings in parallel applications Journal of Supercomputing. 68: 777-797. DOI: 10.1007/s11227-013-1062-0  1
2014 Sundriyal V, Sosonkina M, Gaenko A. Energy efficient communications in quantum chemistry applications Computer Science - Research and Development. 29: 149-158. DOI: 10.1007/s00450-012-0229-x  1
2014 Carpentieri B, Liao J, Sosonkina M. Variable block multilevel iterative solution of general sparse linear systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8385: 520-530. DOI: 10.1007/978-3-642-55195-6_49  1
2013 Gaenko A, Windus TL, Sosonkina M, Gordon MS. Design and Implementation of Scientific Software Components to Enable Multiscale Modeling: The Effective Fragment Potential (QM/EFP) Method. Journal of Chemical Theory and Computation. 9: 222-31. PMID 26589025 DOI: 10.1021/ct300614z  1
2013 Dytrych T, Launey KD, Draayer JP, Maris P, Vary JP, Saule E, Catalyurek U, Sosonkina M, Langr D, Caprio MA. Collective modes in light nuclei from first principles. Physical Review Letters. 111: 252501. PMID 24483740 DOI: 10.1103/PhysRevLett.111.252501  1
2013 Sundriyal V, Sosonkina M. Initial investigation of a scheme to use instantaneous CPU power consumption for energy savings format Proc. of E2sc 2013: 1st Int. Workshop On Energy Efficient Supercomputing - Held in Conjunction With Sc 2013: the Int. Conference For High Performance Computing, Networking, Storage and Analysis. DOI: 10.1145/2536430.2536433  1
2013 Oryspayev D, Potter H, Maris P, Sosonkina M, Vary JP, Binder S, Calci A, Langhammer J, Roth R. Leveraging GPUs in Ab initio nuclear physics calculations Proceedings - Ieee 27th International Parallel and Distributed Processing Symposium Workshops and Phd Forum, Ipdpsw 2013. 1365-1372. DOI: 10.1109/IPDPSW.2013.253  1
2013 Sundriyal V, Sosonkina M, Gaenko A, Zhang Z. Energy saving strategies for parallel applications with point-to-point communication phases Journal of Parallel and Distributed Computing. 73: 1157-1169. DOI: 10.1016/j.jpdc.2013.03.006  1
2013 Bogner S, Bulgac A, Carlson J, Engel J, Fann G, Furnstahl RJ, Gandolfi S, Hagen G, Horoi M, Johnson C, Kortelainen M, Lusk E, Maris P, Nam H, Navratil P, ... ... Sosonkina M, et al. Computational nuclear quantum many-body problem: The UNEDF project Computer Physics Communications. 184: 2235-2250. DOI: 10.1016/j.cpc.2013.05.020  1
2013 Sundriyal V, Sosonkina M, Zhang Z. Achieving energy efficiency during collective communications Concurrency Computation Practice and Experience. 25: 2140-2156. DOI: 10.1002/cpe.2911  1
2012 Herath C, Liu F, Marru S, Gunathilake L, Sosonkina M, Vary JP, Maris P, Pierce M. Web service and workflow abstractions to large scale nuclear physics calculations Proceedings - 2012 Ieee 9th International Conference On Services Computing, Scc 2012. 703-710. DOI: 10.1109/SCC.2012.112  1
2012 Sundriyal V, Sosonkina M, Gaenko A. Runtime procedure for energy savings in applications with point-to-point communications Proceedings - Symposium On Computer Architecture and High Performance Computing. 155-162. DOI: 10.1109/SBAC-PAD.2012.20  1
2012 Maris P, Metin Aktulga H, Caprio MA, Ümit V Çatalyürek, Ng EG, Oryspayev D, Potter H, Saule E, Sosonkina M, Vary JP, Yang C, Zhou Z. Large-scale ab initio configuration interaction calculations for light nuclei Journal of Physics: Conference Series. 403. DOI: 10.1088/1742-6596/403/1/012019  1
2012 Talamudupula SK, Sosonkina M, Gaenko A, Schmidt MW. Fragment molecular orbital method adaptations for heterogeneous computing platforms Procedia Computer Science. 9: 489-497. DOI: 10.1016/j.procs.2012.04.052  1
2012 Srinivasa A, Sosonkina M, Maris P, Vary JP. Efficient shared-array accesses in Ab initio nuclear structure calculations on multicore architectures Procedia Computer Science. 9: 256-265. DOI: 10.1016/j.procs.2012.04.027  1
2012 Bruyneel M, Beghin C, Craveur G, Grihon S, Sosonkina M. Stacking sequence optimization for constant stiffness laminates based on a continuous optimization approach Structural and Multidisciplinary Optimization. 46: 783-794. DOI: 10.1007/s00158-012-0806-4  1
2012 Srinivasa A, Sosonkina M. Nonuniform memory affinity strategy in multithreaded sparse matrix computations Simulation Series. 44: 18-25.  1
2011 Radcliffe N, Watson L, Sosonkina M. A comparison of alternatives for communicating with spawned processes Proceedings of the Annual Southeast Conference. 132-137. DOI: 10.1145/2016039.2016078  1
2011 Srinivasa A, Sosonkina M, Maris P, Vary JP. Dynamic adaptations in ab-initio nuclear physics calculations on multicore computer architectures Ieee International Symposium On Parallel and Distributed Processing Workshops and Phd Forum. 1332-1339. DOI: 10.1109/IPDPS.2011.288  1
2011 Sundriyal V, Sosonkina M, Liu F, Schmidt MW. Dynamic frequency scaling and energy saving in quantum chemistry applications Ieee International Symposium On Parallel and Distributed Processing Workshops and Phd Forum. 837-845. DOI: 10.1109/IPDPS.2011.230  1
2011 Liu F, Sosonkina M. A multilevel parallelism support for multi-physics coupling Procedia Computer Science. 4: 261-270. DOI: 10.1016/j.procs.2011.04.028  1
2011 Sundriyal V, Sosonkina M. Per-call energy saving strategies in all-to-all communications Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6960: 188-197. DOI: 10.1007/978-3-642-24449-0_22  1
2010 Seshagiri L, Wu MS, Sosonkina M, Zhang Z, Gordon MS, Schmidt MW. Enhancing adaptive middleware for quantum chemistry applications with a database framework Proceedings of the 2010 Ieee International Symposium On Parallel and Distributed Processing, Workshops and Phd Forum, Ipdpsw 2010. DOI: 10.1109/IPDPSW.2010.5470760  1
2010 Maris P, Sosonkina M, Vary JP, Ng E, Yang C. Scaling of ab-initio nuclear physics calculations on multicore computer architectures Procedia Computer Science. 1: 97-106. DOI: 10.1016/j.procs.2010.04.012  1
2010 Vary JP, Honkanen H, Li J, Maris P, Shirokov AM, Brodsky SJ, Harindranath A, De Teramond GF, Ng EG, Yang C, Sosonkina M. Ab-initio Hamiltonian approach to light nuclei and to quantum field theory Pramana - Journal of Physics. 75: 39-49. DOI: 10.1007/s12043-010-0063-2  1
2010 Liu F, Sosonkina M, Bramley R. A new approach: Component-based multi-physics coupling through CCA-LISI Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6017: 503-518. DOI: 10.1007/978-3-642-12165-4-40  1
2010 Seshagiri L, Wu MS, Sosonkina M, Zhang Z. Exploring tuning strategies for quantum chemistry computations Software Automatic Tuning: From Concepts to State-of-the-Art Results. 193-208. DOI: 10.1007/978-1-4419-6935-4_12  1
2009 He J, Verstak A, Sosonkina M, Watson LT. Performance modeling and analysis of a massively parallel direct - Part 2 International Journal of High Performance Computing Applications. 23: 29-41. DOI: 10.1177/1094342008098463  1
2009 He J, Verstak A, Watson LT, Sosonkina M. Performance modeling and analysis of a massively parallel direct - Part 1 International Journal of High Performance Computing Applications. 23: 14-28. DOI: 10.1177/1094342008098462  1
2009 Liu F, Sosonkina M, Coffey D. Coupling multi-level component interfaces for parallel sparse linear system solvers Proceedings of the 2009 Workshop On Component-Based High-Performance Computing, Cbhpc 2009. DOI: 10.1145/1687774.1687779  1
2009 He J, Watson LT, Sosonkina M. Algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm direct Acm Transactions On Mathematical Software. 36. DOI: 10.1145/1527286.1527291  1
2009 Vary JP, Maris P, Ng E, Yang C, Sosonkina M. Ab initio nuclear structure - The large sparse matrix eigenvalue problem Journal of Physics: Conference Series. 180. DOI: 10.1088/1742-6596/180/1/012083  1
2009 Laghave N, Sosonkina M, Maris P, Vary JP. Benefits of parallel I/O in Ab initio nuclear physics calculations Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5544: 84-93. DOI: 10.1007/978-3-642-01970-8_9  1
2009 Seshagiri L, Sosonkina M, Zhang Z. Electronic structure calculations and adaptation scheme in multi-core computing environments Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5544: 3-12. DOI: 10.1007/978-3-642-01970-8_1  1
2008 Kenny JP, Janssen CL, Gordon MS, Sosonkina M, Windus TL. A component approach to collaborative scientific software development: Tools and techniques utilized by the Quantum Chemistry Science Application Partnership Scientific Programming. 16: 287-296. DOI: 10.3233/SPR-2008-0264  1
2008 Wu MS, Mori H, Bentz J, Windus T, Netzloff H, Sosonkina M, Gordon MS. Constructing a performance database for large-scale quantum chemistry packages Proceedings of the 2008 Spring Simulation Multiconference, Springsim'08. 393-400. DOI: 10.1145/1400549.1400609  1
2008 Sternberg P, Ng EG, Yang C, Maris P, Vary JP, Sosonkina M, Le HV. Accelerating configuration interaction calculations for nuclear structure 2008 Sc - International Conference For High Performance Computing, Networking, Storage and Analysis, Sc 2008. DOI: 10.1109/SC.2008.5220090  1
2008 Kahou GAA, Grigori L, Sosonkina M. A partitioning algorithm for block-diagonal matrices with overlap Parallel Computing. 34: 332-344. DOI: 10.1016/j.parco.2008.01.004  1
2008 He J, Verstak A, Watson LT, Sosonkina M. Design and implementation of a massively parallel version of DIRECT Computational Optimization and Applications. 40: 217-245. DOI: 10.1007/s10589-007-9092-2  1
2008 Sosonkina M, Sharda A, Negoita A, Vary JP. Integration of ab initio nuclear physics calculations with optimization techniques Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5101: 833-842. DOI: 10.1007/978-3-540-69384-0_88  1
2008 Sosonkina M, Liu F, Bramley R. Usability levels for sparse linear algebra components Concurrency Computation Practice and Experience. 20: 1439-1454. DOI: 10.1002/cpe.1277  1
2008 Pérez C, Sosonkina M. Proceeding of the Component Based High Performance Workshop - CompFrame/HPC-GECO Workshop Series, CBHPC'08: Welcome Proceeding of the Component Based High Performance Workshop - Compframe/Hpc-Geco Workshop Series, Cbhpc'08 1
2008 Sosonkina M, Haupt T. HPC'08 preface Proceedings of the 2008 Spring Simulation Multiconference, Springsim'08. 345.  1
2008 Zhang J, Sosonkina M, Watson LT, Cao Y. Analysis of Goldbeter-Koshland switch using the chemical master equation Proceedings of the 2008 International Conference On Bioinformatics and Computational Biology, Biocomp 2008. 361-367.  1
2007 Wu MS, Bentz JL, Peng F, Sosonkina M, Gordon MS, Kendall RA. Integrating performance tools with large-scale scientific software Proceedings - 21st International Parallel and Distributed Processing Symposium, Ipdps 2007; Abstracts and Cd-Rom. DOI: 10.1109/IPDPS.2007.370567  1
2007 Jones J, Sosonkina M, Saad Y. Component-based iterative methods for sparse linear systems Concurrency Computation Practice and Experience. 19: 625-635. DOI: 10.1002/cpe.1057  1
2007 Bonfiglioli A, Carpentieri B, Sosonkina M. EulFS: A parallel CFD code for the simulation of Euler and Navier-Stokes problems on unstructured grids Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 4699: 676-685.  1
2006 Su HJ, McCarthy JM, Sosonkina M, Watson LT. Algorithm 857: POLSYS_GLP - A parallel general linear product homotopy code for solving polynomial systems of equations Acm Transactions On Mathematical Software. 32: 561-579. DOI: 10.1145/1186785.1186789  1
2006 Mateescu G, Sosonkina M. IMAGE: An approach to building standards-based enterprise Grids 20th International Parallel and Distributed Processing Symposium, Ipdps 2006. 2006. DOI: 10.1109/IPDPS.2006.1639661  1
2006 Ustemirov N, Sosonkina M, Gordon MS, Schmidt MW. Dynamic algorithm selection in parallel GAMESS calculations Proceedings of the International Conference On Parallel Processing Workshops. 489-494. DOI: 10.1109/ICPPW.2006.31  1
2006 Sosonkina M, Tsukerman I. Parallel solvers for flexible approximation schemes in multiparticle simulation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3991: 54-62. DOI: 10.1007/11758501_12  1
2006 Sosonkina M. Adapting distributed scientific applications to run-time network conditions Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3732: 747-755. DOI: 10.1007/11558958_90  1
2006 Sosonkina M. Runtime software techniques for enhancing high-performance applications: An introduction Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3732: 690. DOI: 10.1007/11558958_83  1
2006 Kendall RA, Sosonkina M, Gropp WD, Numrich RW, Sterling T. Parallel programming models applicable to cluster computing and beyond Lecture Notes in Computational Science and Engineering. 51: 3-54.  1
2005 Ustemirov N, Sosonkina M. Co-scheduling parallel electronic structure calculations in SMP cluster environments Proceedings - Ieee International Conference On Cluster Computing, Iccc. DOI: 10.1109/CLUSTR.2005.347014  1
2004 Sosonkina M, Saad Y, Cai X. Using the parallel algebraic recursive multilevel solver in modern physical applications Future Generation Computer Systems. 20: 489-500. DOI: 10.1016/S0167-739X(03)00189-4  1
2004 Storie S, Sosonkina M. Packet probing as network load detection for scientific applications at run-time Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 871-880.  1
2004 He J, Sosonkina M, Shaffer CA, Tyson JJ, Watson LT, Zwolak JW. A hierarchical parallel scheme for global parameter estimation in systems biology Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 571-579.  1
2003 Cai X, Sosonkina M. A numerical study of some parallel algebraic preconditioners Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2003. DOI: 10.1109/IPDPS.2003.1213469  1
2003 Guillaume P, Saad Y, Sosonkina M. Rational approximation preconditioners for sparse linear systems Journal of Computational and Applied Mathematics. 158: 419-442. DOI: 10.1016/S0377-0427(03)00480-1  1
2003 Kulkarni D, Sosonkina M. A framework for integrating network information into distributed iterative solution of sparse linear systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2565: 436-450.  1
2003 Li Z, Saad Y, Sosonkina M. pARMS: A parallel version of the algebraic recursive multilevel solver Numerical Linear Algebra With Applications. 10: 485-509.  1
2002 Cai X, Saad Y, Sosonkina M. Parallel iterative methods in modern physical applications Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2330: 345-354.  1
2002 Kulkarni D, Sosonkina M. Dynamic network information collection for distributed scientific application adaptation Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2552: 555-562.  1
2002 Saad Y, Sosonkina M. Parms: A package for solving general sparse linear systems on parallel computers Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2328: 446-457.  1
2001 Sosonkina M, Chen G. Design of a tool for providing dynamic network information to an application Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 2127: 350-357.  1
2000 Sosonkina M, Melson JT, Saad Y, Watson LT. Preconditioning strategies for linear systems arising in tire design Numerical Linear Algebra With Applications. 7: 743-757.  1
1999 Saad Y, Sosonkina M. Non-standard parallel solution strategies for distributed sparse linear systems Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1557: 13-27. DOI: 10.1007/3-540-49164-3_2  1
1999 Saad Y, Sosonkina M. Distributed Schur complement techniques for general sparse linear systems Siam Journal On Scientific Computing. 21: 1337-1356.  1
1999 Sosonkina M, Allison DCS, Watson LT. Parallel adaptive GMRES implementations for homotopy methods Siam Journal On Optimization. 9: 1149-1158.  1
1998 Saad Y, Sosonkina M. Solution of distributed sparse linear systems using PSPARSLIB Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 1541: 503-509.  1
Show low-probability matches.