Mark Niedre - Publications

Affiliations: 
Electrical and Computer Engineering Northeastern University, Boston, MA, United States 
Area:
Electronics and Electrical Engineering, Biomedical Engineering

55 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 Mu Y, Pera V, Niedre M. Multiplexed fluorescence mediated tomography with temporal and spectral data. Journal of Biomedical Optics. 21: 105001. PMID 27699390 DOI: 10.1117/1.JBO.21.10.105001  1
2016 Markovic S, Belz J, Kumar R, Cormack RA, Sridhar S, Niedre M. Near-infrared fluorescence imaging platform for quantifying in vivo nanoparticle diffusion from drug loaded implants. International Journal of Nanomedicine. 11: 1213-23. PMID 27069363 DOI: 10.2147/IJN.S93324  1
2016 Pera V, Brooks DH, Niedre M. Multiplexed fluorescence tomography with spectral and temporal data: demixing with intrinsic regularization. Biomedical Optics Express. 7: 111-31. PMID 26819822 DOI: 10.1364/BOE.7.000111  1
2015 Mu Y, Niedre M. Fast single photon avalanche photodiode-based time-resolved diffuse optical tomography scanner. Biomedical Optics Express. 6: 3596-609. PMID 26417526 DOI: 10.1364/BOE.6.003596  1
2015 Markovic S, Li S, Niedre M. Performance of computer vision in vivo flow cytometry with low fluorescence contrast. Journal of Biomedical Optics. 20: 035005. PMID 25822954 DOI: 10.1117/1.JBO.20.3.035005  1
2015 Kumar R, Belz J, Markovic S, Jadhav T, Fowle W, Niedre M, Cormack R, Makrigiorgos MG, Sridhar S. Nanoparticle-based brachytherapy spacers for delivery of localized combined chemoradiation therapy. International Journal of Radiation Oncology, Biology, Physics. 91: 393-400. PMID 25636762 DOI: 10.1016/j.ijrobp.2014.10.041  1
2015 Pera V, Brooks DH, Niedre M. A sparse nonnegative demixing algorithm with intrinsic regularization for multiplexed fluorescence tomography Proceedings - International Symposium On Biomedical Imaging. 2015: 1044-1047. DOI: 10.1109/ISBI.2015.7164050  1
2015 Markovic S, Li S, Camps O, Sznaier M, Niedre M. Computer vision In Vivo flow cytometry of low-abundance circulating cells Bio-Optics: Design and Application, Boda 2015 1
2014 Markovic S, Siyuan Li, Tianxue Zhang, Niedre M. Toward lower contrast computer vision in vivo flow cytometry. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2014: 4256-9. PMID 25570932 DOI: 10.1109/EMBC.2014.6944564  1
2014 Mu Y, Niedre M. A fast SPAD-based small animal imager for early-photon diffuse optical tomography. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2014: 2833-6. PMID 25570581 DOI: 10.1109/EMBC.2014.6944213  1
2014 Pera V, Brooks DH, Niedre M. On the use of the Cramér-Rao lower bound for diffuse optical imaging system design. Journal of Biomedical Optics. 19: 025002. PMID 24503635 DOI: 10.1117/1.JBO.19.2.025002  1
2014 Hollmann JL, Arambel P, Piet J, Shefelbine S, Markovic S, Niedre M, Dimarzio CA. Bone optical spectroscopy for the measurement of hemoglobin content Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9155. DOI: 10.1117/12.2060716  1
2014 Markovic S, Kumar R, Belz J, Sridhar S, Niedre M. Fluorescence quantification of nanoparticle diffusion from smart brachytherapy spacers in vivo Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1109/NEBEC.2014.6972866  1
2014 Belz J, Kumar R, Markovic S, Niedre M, Sridhar S, Nguyen P, Damico A, Makrigiorgos M, Cormack R. Localized tumor delivery of radiosensitizers and chemotherapeutics using 'INCeRT' implants Proceedings of the Ieee Annual Northeast Bioengineering Conference, Nebec. 2014. DOI: 10.1109/NEBEC.2014.6972728  1
2013 Markovic S, Li B, Pera V, Sznaier M, Camps O, Niedre M. A computer vision approach to rare cell in vivo fluorescence flow cytometry. Cytometry. Part a : the Journal of the International Society For Analytical Cytology. 83: 1113-23. PMID 24273157 DOI: 10.1002/cyto.a.22397  1
2013 Mu Y, Valim N, Niedre M. Evaluation of a fast single-photon avalanche photodiode for measurement of early transmitted photons through diffusive media. Optics Letters. 38: 2098-100. PMID 23938989 DOI: 10.1364/OL.38.002098  1
2013 Pestana N, Mortensen LJ, Runnels JP, Vickers D, Murthy SK, Lin CP, Niedre M. Improved diffuse fluorescence flow cytometer prototype for high sensitivity detection of rare circulating cells in vivo. Journal of Biomedical Optics. 18: 077002. PMID 23831714 DOI: 10.1117/1.JBO.18.7.077002  1
2013 Pera V, Zettergren E, Brooks DH, Niedre M. Maximum likelihood tomographic reconstruction of extremely sparse solutions in diffuse fluorescence flow cytometry. Optics Letters. 38: 2357-9. PMID 23811927 DOI: 10.1364/OL.38.002357  1
2013 Valim N, Brock J, Leeser M, Niedre M. The effect of temporal impulse response on experimental reduction of photon scatter in time-resolved diffuse optical tomography. Physics in Medicine and Biology. 58: 335-49. PMID 23257349 DOI: 10.1088/0031-9155/58/2/335  1
2013 Pestana N, Walsh D, Hatch A, Hahn P, Jaffe GJ, Murthy SK, Niedre M. A dedicated low-cost fluorescence microfluidic device reader for point-of-care ocular diagnostics Journal of Medical Devices, Transactions of the Asme. 7. DOI: 10.1115/1.4023995  1
2013 Mu Y, Valim N, Niedre M. Fast avalanche photodiode-based small animal time-resolved diffuse f2l0u13o trhee socpteicnal cseoc iety (osa) tomography imager Optical Molecular Probes, Imaging and Drug Delivery, Omp 2013 1
2013 Pestana N, Pera V, Lin CP, Niedre M. Multi-wavelength fluorescence diffuse fluorescence flow cytometry fo2r0 1d3 tehtee ocptticiaol sno caienty d(o sa) enumeration of very rare circulating cells in vivo Optical Molecular Probes, Imaging and Drug Delivery, Omp 2013 1
2012 Dimarzio CA, Niedre M. Pre-clinical optical molecular imaging in the lung: technological challenges and future prospects. Journal of Thoracic Disease. 4: 556-7. PMID 23205277 DOI: 10.3978/j.issn.2072-1439.2012.08.11  1
2012 Zettergren E, Swamy T, Runnels J, Lin CP, Niedre M. Tomographic sensing and localization of fluorescently labeled circulating cells in mice in vivo. Physics in Medicine and Biology. 57: 4627-41. PMID 22750660 DOI: 10.1088/0031-9155/57/14/4627  1
2012 Zettergren E, Vickers D, Runnels J, Murthy SK, Lin CP, Niedre M. Instrument for fluorescence sensing of circulating cells with diffuse light in mice in vivo. Journal of Biomedical Optics. 17: 037001. PMID 22502573 DOI: 10.1117/1.JBO.17.3.037001  1
2012 Valim N, Niedre M. Instrumentation considerations for measurement of early arriving photons in diffuse optical tomography Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8215. DOI: 10.1117/12.908774  1
2012 Brock J, Leeser M, Niedre M. Heterogeneous tasks and conduits framework for rapid application portability and deployment 2012 Innovative Parallel Computing, Inpar 2012. DOI: 10.1109/InPar.2012.6339588  1
2012 Valim N, Niedre M. The effect of instrumentation on the experimental reduction of photon scatter in time-resolved diffuse fluorescence tomography Biomedical Optics, Biomed 2012 1
2012 Zettergren E, Runnels J, Lin CP, Niedre M. Small animal tomographic In Vivo flow cytometry with diffuse fluorescent light Biomedical Optics, Biomed 2012 1
2011 Zettergren E, Vickers D, Runnels J, Lin CP, Niedre MJ. Validation of a device for fluorescence sensing of rare circulating cells with diffusive light in an optical flow phantom model. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2011: 486-9. PMID 22254354 DOI: 10.1109/IEMBS.2011.6090071  1
2011 Li Z, Niedre M. Hybrid use of early and quasi-continuous wave photons in time-domain tomographic imaging for improved resolution and quantitative accuracy. Biomedical Optics Express. 2: 665-79. PMID 21412471 DOI: 10.1364/BOE.2.000665  1
2011 Jarvi MT, Niedre MJ, Patterson MS, Wilson BC. The influence of oxygen depletion and photosensitizer triplet-state dynamics during photodynamic therapy on accurate singlet oxygen luminescence monitoring and analysis of treatment dose response. Photochemistry and Photobiology. 87: 223-34. PMID 21143603 DOI: 10.1111/j.1751-1097.2010.00851.x  1
2011 Zettergren E, Vickers D, Niedre M. Sensing and enumerating rare circulating cells with diffuse light Progress in Biomedical Optics and Imaging - Proceedings of Spie. 7902. DOI: 10.1117/12.875332  1
2010 Valim N, Brock J, Niedre M. Experimental measurement of time-dependent photon scatter for diffuse optical tomography. Journal of Biomedical Optics. 15: 065006. PMID 21198170 DOI: 10.1117/1.3523371  1
2010 Niedre M, Ntziachristos V. Comparison of fluorescence tomographic imaging in mice with early-arriving and quasi-continuous-wave photons. Optics Letters. 35: 369-71. PMID 20125724 DOI: 10.1364/OL.35.000369  1
2009 Niedre M, Ntziachristos V. Complete angle small animal fluorescence imaging with early-arriving photons. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 2009: 6331-4. PMID 19964155 DOI: 10.1109/IEMBS.2009.5333167  1
2008 Niedre MJ, de Kleine RH, Aikawa E, Kirsch DG, Weissleder R, Ntziachristos V. Early photon tomography allows fluorescence detection of lung carcinomas and disease progression in mice in vivo. Proceedings of the National Academy of Sciences of the United States of America. 105: 19126-31. PMID 19015534 DOI: 10.1073/pnas.0804798105  1
2008 Chen J, Lovell JF, Lo PC, Stefflova K, Niedre M, Wilson BC, Zheng G. A tumor mRNA-triggered photodynamic molecular beacon based on oligonucleotide hairpin control of singlet oxygen production. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 7: 775-81. PMID 18597024 DOI: 10.1039/b800653a  1
2008 Moriyama EH, Niedre MJ, Jarvi MT, Mocanu JD, Moriyama Y, Subarsky P, Li B, Lilge LD, Wilson BC. The influence of hypoxia on bioluminescence in luciferase-transfected gliosarcoma tumor cells in vitro. Photochemical & Photobiological Sciences : Official Journal of the European Photochemistry Association and the European Society For Photobiology. 7: 675-80. PMID 18528551 DOI: 10.1039/b719231b  1
2008 Haller J, Hyde D, Deliolanis N, De Kleine R, Niedre M, Ntziachristos V. Visualization of pulmonary inflammation using noninvasive fluorescence molecular imaging Journal of Applied Physiology. 104: 795-802. PMID 18202169 DOI: 10.1152/japplphysiol.00959.2007  1
2008 Niedre M, Ntziachristos V. Elucidating structure and function in vivo with hybrid fluorescence and magnetic resonance imaging Proceedings of the Ieee. 96: 382-396. DOI: 10.1109/JPROC.2007.913498  1
2007 Baeten J, Niedre M, Dunham J, Ntziachristos V. Development of fluorescent materials for Diffuse Fluorescence Tomography standards and phantoms. Optics Express. 15: 8681-94. PMID 19547203 DOI: 10.1364/OE.15.008681  1
2007 Moriyama EH, Jarvi M, Niedre M, Mocanu JD, Moriyama Y, Buhong L, Lilge L, Wilson BC. In vitro influence of hypoxia on bioluminescence imaging in brain tumor cells Progress in Biomedical Optics and Imaging - Proceedings of Spie. 6449. DOI: 10.1117/12.696720  1
2006 Deliolanis N, Lasser T, Niedre M, Soubret A, Ntziachristos V. In-vivo lung cancer imaging in mice using 360 degrees free-space fluorescence molecular tomography. Conference Proceedings : ... Annual International Conference of the Ieee Engineering in Medicine and Biology Society. Ieee Engineering in Medicine and Biology Society. Annual Conference. 1: 2370-2. PMID 17946109 DOI: 10.1109/IEMBS.2006.260683  1
2006 Niedre MJ, Turner GM, Ntziachristos V. Time-resolved imaging of optical coefficients through murine chest cavities. Journal of Biomedical Optics. 11: 064017. PMID 17212540 DOI: 10.1117/1.2400702  1
2006 Jarvi MT, Niedre MJ, Patterson MS, Wilson BC. Singlet oxygen luminescence dosimetry (SOLD) for photodynamic therapy: current status, challenges and future prospects. Photochemistry and Photobiology. 82: 1198-210. PMID 16808593 DOI: 10.1562/2006-05-03-IR-891  1
2006 Niedre MJ, Turner GM, Ntziachristos V. Time-gated imaging through murine chest cavities Optics Infobase Conference Papers 1
2006 Niedre MJ, Turner GM, Ntziachristos V. Complete-angle projection diffuse fluorescence molecular tomography with early photons Optics Infobase Conference Papers 1
2005 Niedre MJ, Patterson MS, Giles A, Wilson BC. Imaging of photodynamically generated singlet oxygen luminescence in vivo. Photochemistry and Photobiology. 81: 941-3. PMID 15865471 DOI: 10.1562/2005-03-15-TSN-462  1
2005 Skrzypczak-Jankun E, Borbulevych OY, Melillo A, Keck R, Soriano-Garcia M, Aniola J, Niedre M, Lilge L, Selman SH, Jankun J. Aspirin blocks binding of photosensitizer SnET2 into human serum albumin: implications for photodynamic therapy International Journal of Molecular Medicine. 15: 777-783. PMID 15806298  1
2005 Niedre MJ, Yu CS, Patterson MS, Wilson BC. Singlet oxygen luminescence as an in vivo photodynamic therapy dose metric: validation in normal mouse skin with topical amino-levulinic acid. British Journal of Cancer. 92: 298-304. PMID 15655542 DOI: 10.1038/sj.bjc.6602331  1
2004 Chen J, Stefflova K, Niedre MJ, Wilson BC, Chance B, Glickson JD, Zheng G. Protease-triggered photosensitizing beacon based on singlet oxygen quenching and activation. Journal of the American Chemical Society. 126: 11450-1. PMID 15366886 DOI: 10.1021/ja047392k  1
2003 Niedre MJ, Secord AJ, Patterson MS, Wilson BC. In vitro tests of the validity of singlet oxygen luminescence measurements as a dose metric in photodynamic therapy. Cancer Research. 63: 7986-94. PMID 14633731  1
2002 Niedre M, Patterson MS, Wilson BC. Direct near-infrared luminescence detection of singlet oxygen generated by photodynamic therapy in cells in vitro and tissues in vivo. Photochemistry and Photobiology. 75: 382-91. PMID 12003128 DOI: 10.1562/0031-8655(2002)075<0382:DNILDO>2.0.CO;2  1
2002 Niedre MJ, Patterson MS, Boruvka N, Wilson BC. Measurement of singlet oxygen luminescence from AML5 cells sensitized with ALA-induced PpIX in suspension during photodynamic therapy and correlation with cell viability after treatment Proceedings of Spie - the International Society For Optical Engineering. 4612: 93-101. DOI: 10.1117/12.469336  1
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