Kevin Chou - Publications

Affiliations: 
Mechanical Engineering The University of Alabama, Tuscaloosa, AL 
Area:
Mechanical Engineering

76 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Chou KC, Cheng X, Xiao X. pLoc_bal-mEuk: predict subcellular localization of eukaryotic proteins by general PseAAC and quasi-balancing training dataset. Medicinal Chemistry (Shariqah (United Arab Emirates)). PMID 30569871 DOI: 10.2174/1573406415666181218102517  0.56
2018 Xiao X, Cheng X, Chen G, Mao Q, Chou KC. pLoc_bal-mVirus: predict subcellular localization of multi-label virus proteins by PseAAC and IHTS treatment to balance training dataset. Medicinal Chemistry (Shariqah (United Arab Emirates)). PMID 30556503 DOI: 10.2174/1573406415666181217114710  0.56
2018 Xiao X, Xu ZC, Qiu WR, Wang P, Ge HT, Chou KC. iPSW(2L)-PseKNC: A two-layer predictor for identifying promoters and their strength by hybrid features via pseudo K-tuple nucleotide composition. Genomics. PMID 30529532 DOI: 10.1016/j.ygeno.2018.12.001  0.56
2018 Cheng X, Xiao X, Chou KC. pLoc_bal-mPlant: predict subcellular localization of plant proteins by general PseAAC and balancing training dataset. Current Pharmaceutical Design. PMID 30451108 DOI: 10.2174/1381612824666181119145030  0.56
2018 Jia J, Li X, Qiu W, Xiao X, Chou KC. iPPI-PseAAC(CGR): Identify protein-protein interactions by incorporating chaos game representation into PseAAC. Journal of Theoretical Biology. PMID 30312687 DOI: 10.1016/j.jtbi.2018.10.021  0.56
2018 Cheng X, Xiao X, Chou KC. pLoc_bal-mGneg: predict subcellular localization of Gram-negative bacterial proteins by quasi-balancing training dataset and general PseAAC. Journal of Theoretical Biology. PMID 30201434 DOI: 10.1016/j.jtbi.2018.09.005  0.56
2018 Chou KC, Cheng X, Xiao X. pLoc_bal-mHum: Predict subcellular localization of human proteins by PseAAC and quasi-balancing training dataset. Genomics. PMID 30179658 DOI: 10.1016/j.ygeno.2018.08.007  0.56
2018 Cheng X, Lin WZ, Xiao X, Chou KC. pLoc_bal-mAnimal: predict subcellular localization of animal proteins by balancing training dataset and PseAAC. Bioinformatics (Oxford, England). PMID 30010789 DOI: 10.1093/bioinformatics/bty628  0.56
2018 Liu B, Li K, Huang DS, Chou KC. iEnhancer-EL: Identifying enhancers and their strength with ensemble learning approach. Bioinformatics (Oxford, England). PMID 29878118 DOI: 10.1093/bioinformatics/bty458  0.56
2018 Xiao X, Cheng X, Chen G, Mao Q, Chou KC. pLoc-mGpos: Predict subcellular localization of Gram-positive bacterial proteins by quasi-balancing training dataset and PseAAC. Genomics. PMID 29842950 DOI: 10.1016/j.ygeno.2018.05.017  0.56
2018 Liu B, Weng F, Huang DS, Chou KC. iRO-3wPseKNC: Identify DNA replication origins by three-window-based PseKNC. Bioinformatics (Oxford, England). PMID 29684124 DOI: 10.1093/bioinformatics/bty312  0.56
2017 Cheng X, Xiao X, Chou KC. Erratum to "pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC" [Gene 628 (2017) 315-321]. Gene. PMID 29190459 DOI: 10.1016/j.gene.2017.11.060  0.56
2017 Cheng X, Xiao X, Chou KC. pLoc-mHum: predict subcellular localization of multi-location human proteins via general PseAAC to winnow out the crucial GO information. Bioinformatics (Oxford, England). PMID 29106451 DOI: 10.1093/bioinformatics/btx711  0.56
2017 Cheng X, Xiao X, Chou KC. Erratum to "pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC" [Gene 628 (2017) 315-321]. Gene. PMID 29055672 DOI: 10.1016/j.gene.2017.10.042  0.56
2017 Cheng X, Zhao SG, Lin WZ, Xiao X, Chou KC. pLoc-mAnimal: predict subcellular localization of animal proteins with both single and multiple sites. Bioinformatics (Oxford, England). PMID 29036535 DOI: 10.1093/bioinformatics/btx476  0.56
2017 Cheng X, Xiao X, Chou KC. pLoc-mGneg: Predict subcellular localization of Gram-negative bacterial proteins by deep gene ontology learning via general PseAAC. Genomics. PMID 28989035 DOI: 10.1016/j.ygeno.2017.10.002  0.56
2017 Liu B, Yang F, Huang DS, Chou KC. iPromoter-2L: a two-layer predictor for identifying promoters and their types by multi-window-based PseKNC. Bioinformatics (Oxford, England). PMID 28968797 DOI: 10.1093/bioinformatics/btx579  0.56
2017 Cheng X, Xiao X, Chou KC. pLoc-mEuk: Predict subcellular localization of multi-label eukaryotic proteins by extracting the key GO information into general PseAAC. Genomics. PMID 28818512 DOI: 10.1016/j.ygeno.2017.08.005  0.56
2017 Cheng X, Zhao SG, Xiao X, Chou KC. iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals. Bioinformatics (Oxford, England). 33: 2610. PMID 28810696 DOI: 10.1093/bioinformatics/btx387  0.56
2017 Cheng X, Xiao X, Chou KC. pLoc-mVirus: Predict subcellular localization of multi-location virus proteins via incorporating the optimal GO information into general PseAAC. Gene. PMID 28728979 DOI: 10.1016/j.gene.2017.07.036  0.56
2017 Cheng X, Xiao X, Chou KC. pLoc-mPlant: predict subcellular localization of multi-location plant proteins by incorporating the optimal GO information into general PseAAC. Molecular Biosystems. PMID 28702580 DOI: 10.1039/c7mb00267j  0.56
2017 Liu B, Yang F, Chou KC. 2L-piRNA: A Two-Layer Ensemble Classifier for Identifying Piwi-Interacting RNAs and Their Function. Molecular Therapy. Nucleic Acids. 7: 267-277. PMID 28624202 DOI: 10.1016/j.omtn.2017.04.008  0.56
2017 Cheng X, Zhao SG, Xiao X, Chou KC. iATC-mHyb: a hybrid multi-label classifier for predicting the classification of anatomical therapeutic chemicals. Oncotarget. PMID 28455987 DOI: 10.18632/oncotarget.17028  0.56
2017 Liu B, Wu H, Zhang D, Wang X, Chou KC. Pse-Analysis: a python package for DNA/RNA and protein/ peptide sequence analysis based on pseudo components and kernel methods. Oncotarget. PMID 28076851 DOI: 10.18632/oncotarget.14524  0.56
2016 Cheng X, Zhao SG, Xiao X, Chou KC. iATC-mISF: a multi-label classifier for predicting the classes of anatomical therapeutic chemicals. Bioinformatics (Oxford, England). PMID 27742696 DOI: 10.1093/bioinformatics/btw644  0.56
2016 Jia J, Zhang L, Liu Z, Xiao X, Chou KC. pSumo-CD: Predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC. Bioinformatics (Oxford, England). PMID 27354696 DOI: 10.1093/bioinformatics/btw387  0.56
2016 Jia J, Liu Z, Xiao X, Liu B, Chou KC. iPPBS-Opt: A Sequence-Based Ensemble Classifier for Identifying Protein-Protein Binding Sites by Optimizing Imbalanced Training Datasets. Molecules (Basel, Switzerland). 21. PMID 26797600 DOI: 10.3390/molecules21010095  0.56
2016 Xu Y, Chou KC. Recent Progress in Predicting Posttranslational Modification Sites in Proteins. Current Topics in Medicinal Chemistry. 16: 591-603. PMID 26286211 DOI: 10.2174/1568026615666150819110421  0.56
2016 Chen J, Li T, Li X, Chou KC, Hou X. Some New Perspective on the Reaction Mechanism of MgO-SiO2-H2O System International Journal of Applied Ceramic Technology. DOI: 10.1111/ijac.12607  0.56
2016 Yang YT, Tang HW, Chou KY. Numerical simulation and optimization of nanofluid in a C-shaped chaotic channel Numerical Heat Transfer; Part a: Applications. 70: 366-383. DOI: 10.1080/10407782.2016.1173490  0.48
2016 Jiang H, Chou KW, Petrash S, Williams G, Thieme J, Nykypanchuk D, Li L, Muto A, Chen-Wiegart YCK. Environmentally induced chemical and morphological heterogeneity of zinc oxide thin films Applied Physics Letters. 109. DOI: 10.1063/1.4962203  0.32
2016 Pang Y, Sun D, Gu Q, Chou KC, Wang X, Li Q. Comprehensive Determination of Kinetic Parameters in Solid-State Phase Transitions: An Extended Jonhson-Mehl-Avrami-Kolomogorov Model with Analytical Solutions Crystal Growth and Design. 16: 2404-2415. DOI: 10.1021/acs.cgd.6b00187  0.56
2016 Qiu WR, Sun BQ, Xiao X, Xu D, Chou KC. iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory Molecular Informatics. DOI: 10.1002/minf.201600010  0.56
2016 Chou KC. Meet our editorial board member Protein and Peptide Letters. 23: 503.  0.56
2015 Zhu Y, Cong QW, Liu Y, He L, Cai L, Chou KC. Antithrombin is an importantly inhibitory role against blood clots. Current Topics in Medicinal Chemistry. PMID 26411319 DOI: 10.2174/1568026616666150923152745  0.44
2015 Jia J, Liu Z, Xiao X, Liu B, Chou KC. Identification of protein-protein binding sites by incorporating the physicochemical properties and stationary wavelet transforms into pseudo amino acid composition. Journal of Biomolecular Structure & Dynamics. 1-38. PMID 26375780 DOI: 10.1080/07391102.2015.1095116  0.56
2015 Cai L, Yang YH, He L, Chou KC. Modulation of cytokine network in the comorbidity of schizophrenia and tuberculosis. Current Topics in Medicinal Chemistry. PMID 26286214 DOI: 10.2174/1568026615666150819105033  0.56
2015 Liu B, Liu F, Wang X, Chen J, Fang L, Chou KC. Pse-in-One: a web server for generating various modes of pseudo components of DNA, RNA, and protein sequences. Nucleic Acids Research. 43: W65-71. PMID 25958395 DOI: 10.1093/nar/gkv458  0.56
2015 Liu B, Liu F, Fang L, Wang X, Chou KC. repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects. Bioinformatics (Oxford, England). 31: 1307-9. PMID 25504848 DOI: 10.1093/bioinformatics/btu820  0.56
2015 Xu R, Zhou J, Liu B, He Y, Zou Q, Wang X, Chou KC. Identification of DNA-binding proteins by incorporating evolutionary information into pseudo amino acid composition via the top-n-gram approach. Journal of Biomolecular Structure & Dynamics. 33: 1720-30. PMID 25252709 DOI: 10.1080/07391102.2014.968624  0.56
2014 Liu B, Xu J, Lan X, Xu R, Zhou J, Wang X, Chou KC. iDNA-Prot|dis: identifying DNA-binding proteins by incorporating amino acid distance-pairs and reduced alphabet profile into the general pseudo amino acid composition. Plos One. 9: e106691. PMID 25184541 DOI: 10.1371/journal.pone.0106691  0.56
2014 Liu B, Zhang D, Xu R, Xu J, Wang X, Chen Q, Dong Q, Chou KC. Combining evolutionary information extracted from frequency profiles with sequence-based kernels for protein remote homology detection. Bioinformatics (Oxford, England). 30: 472-9. PMID 24318998 DOI: 10.1093/bioinformatics/btt709  0.56
2013 Chen L, Huang T, Zhang J, Zheng MY, Feng KY, Cai YD, Chou KC. Predicting drugs side effects based on chemical-chemical interactions and protein-chemical interactions Biomed Research International. 2013. PMID 24078917 DOI: 10.1155/2013/485034  0.56
2013 Jiang Y, Huang T, Chen L, Gao YF, Cai Y, Chou KC. Signal propagation in protein interaction network during colorectal cancer progression. Biomed Research International. 2013: 287019. PMID 23586028 DOI: 10.1155/2013/287019  0.56
2013 Lin WZ, Fang JA, Xiao X, Chou KC. iLoc-Animal: a multi-label learning classifier for predicting subcellular localization of animal proteins. Molecular Biosystems. 9: 634-44. PMID 23370050 DOI: 10.1039/c3mb25466f  0.56
2012 Lin WZ, Fang JA, Xiao X, Chou KC. Predicting secretory proteins of malaria parasite by incorporating sequence evolution information into pseudo amino acid composition via grey system model. Plos One. 7: e49040. PMID 23189138 DOI: 10.1371/journal.pone.0049040  0.56
2012 Li BQ, Huang T, Liu L, Cai YD, Chou KC. Identification of colorectal cancer related genes with mrmr and shortest path in protein-protein interaction network Plos One. 7. PMID 22496748 DOI: 10.1371/Journal.Pone.0033393  0.56
2012 Huang T, Wang J, Cai YD, Yu H, Chou KC. Hepatitis C virus network based classification of hepatocellular cirrhosis and carcinoma. Plos One. 7: e34460. PMID 22493692 DOI: 10.1371/Journal.Pone.0034460  0.56
2012 Li BQ, Hu LL, Niu S, Cai YD, Chou KC. Predict and analyze S-nitrosylation modification sites with the mRMR and IFS approaches. Journal of Proteomics. 75: 1654-65. PMID 22178444 DOI: 10.1016/J.Jprot.2011.12.003  0.32
2012 Cai L, Huang W, Chou KC. Prostate cancer with variants in CYP17 and UGT2B17 genes: a meta-analysis. Protein and Peptide Letters. 19: 62-9. PMID 21919858 DOI: 10.2174/092986612798472848  0.44
2011 Huang T, Chen L, Cai YD, Chou KC. Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property Plos One. 6. PMID 21980418 DOI: 10.1371/Journal.Pone.0025297  0.56
2011 Lin WZ, Fang JA, Xiao X, Chou KC. iDNA-Prot: identification of DNA binding proteins using random forest with grey model. Plos One. 6: e24756. PMID 21935457 DOI: 10.1371/journal.pone.0024756  0.56
2011 Huang T, Niu S, Xu Z, Huang Y, Kong X, Cai YD, Chou KC. Predicting transcriptional activity of multiple site p53 mutants based on hybrid properties. Plos One. 6: e22940. PMID 21857971 DOI: 10.1371/Journal.Pone.0022940  0.56
2011 Hu LL, Huang T, Cai YD, Chou KC. Prediction of body fluids where proteins are secreted into based on protein interaction network Plos One. 6. PMID 21829572 DOI: 10.1371/Journal.Pone.0022989  0.56
2011 Wang P, Hu L, Liu G, Jiang N, Chen X, Xu J, Zheng W, Li L, Tan M, Chen Z, Song H, Cai YD, Chou KC. Prediction of antimicrobial peptides based on sequence alignment and feature selection methods. Plos One. 6: e18476. PMID 21533231 DOI: 10.1371/Journal.Pone.0018476  0.44
2011 Hu L, Huang T, Shi X, Lu WC, Cai YD, Chou KC. Predicting functions of proteins in mouse based on weighted protein-protein interaction network and protein hybrid properties. Plos One. 6: e14556. PMID 21283518 DOI: 10.1371/Journal.Pone.0014556  0.56
2011 Hu LL, Wan SB, Niu S, Shi XH, Li HP, Cai YD, Chou KC. Prediction and analysis of protein palmitoylation sites. Biochimie. 93: 489-96. PMID 21075167 DOI: 10.1016/J.Biochi.2010.10.022  0.32
2011 Kandaswamy KK, Chou KC, Martinetz T, Möller S, Suganthan PN, Sridharan S, Pugalenthi G. AFP-Pred: A random forest approach for predicting antifreeze proteins from sequence-derived properties. Journal of Theoretical Biology. 270: 56-62. PMID 21056045 DOI: 10.1016/J.Jtbi.2010.10.037  0.56
2010 Chen L, Huang T, Shi XH, Cai YD, Chou KC. Analysis of protein pathway networks using hybrid properties Molecules. 15: 8177-8192. PMID 21076385 DOI: 10.3390/Molecules15118177  0.56
2010 Huang T, Shi XH, Wang P, He Z, Feng KY, Hu L, Kong X, Li YX, Cai YD, Chou KC. Analysis and prediction of the metabolic stability of proteins based on their sequential features, subcellular locations and interaction networks Plos One. 5. PMID 20532046 DOI: 10.1371/Journal.Pone.0010972  0.56
2007 Sirois S, Touaibia M, Chou KC, Roy R. Glycosylation of HIV-1 gp120 V3 loop: towards the rational design of a synthetic carbohydrate vaccine. Current Medicinal Chemistry. 14: 3232-42. PMID 18220757 DOI: 10.2174/092986707782793826  0.56
2006 Chou KC, Wei DQ, Du QS, Sirois S, Zhong WZ. Progress in computational approach to drug development against SARS. Current Medicinal Chemistry. 13: 3263-70. PMID 17168850 DOI: 10.2174/092986706778773077  0.56
2006 Kem W, Soti F, Wildeboer K, LeFrancois S, MacDougall K, Wei DQ, Chou KC, Arias HR. The nemertine toxin anabaseine and its derivative DMXBA (GTS-21): Chemical and pharmacological properties Marine Drugs. 4: 255-273. DOI: 10.3390/md403255  0.56
2005 Sirois S, Sing T, Chou KC. HIV-1 gp120 V3 loop for structure-based drug design. Current Protein & Peptide Science. 6: 413-22. PMID 16248793 DOI: 10.2174/138920305774329359  0.56
2005 Xiao X, Shao S, Ding Y, Huang Z, Chen X, Chou KC. An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation. Journal of Theoretical Biology. 235: 555-65. PMID 15935173 DOI: 10.1016/j.jtbi.2005.02.008  0.56
2005 Sirois S, Hatzakis G, Wei D, Du Q, Chou KC. Assessment of chemical libraries for their druggability. Computational Biology and Chemistry. 29: 55-67. PMID 15680586 DOI: 10.1016/j.compbiolchem.2004.11.003  0.56
2004 Cai YD, Zhou GP, Jen CH, Lin SL, Chou KC. Identify catalytic triads of serine hydrolases by support vector machines. Journal of Theoretical Biology. 228: 551-7. PMID 15178202 DOI: 10.1016/J.Jtbi.2004.02.019  0.56
2004 Sirois S, Wei DQ, Du Q, Chou KC. Virtual screening for SARS-CoV protease based on KZ7088 pharmacophore points. Journal of Chemical Information and Computer Sciences. 44: 1111-22. PMID 15154780 DOI: 10.1021/ci034270n  0.56
2004 Chou KC, Cai YD. A novel approach to predict active sites of enzyme molecules. Proteins. 55: 77-82. PMID 14997541 DOI: 10.1002/Prot.10622  0.36
2004 Cai YD, Ricardo PW, Jen CH, Chou KC. Application of SVM to predict membrane protein types. Journal of Theoretical Biology. 226: 373-6. PMID 14759643 DOI: 10.1016/J.Jtbi.2003.08.015  0.56
2004 Cai YD, Liu XJ, Li YX, Xu XB, Chou KC. Prediction of beta-turns with learning machines. Peptides. 24: 665-9. PMID 12895651 DOI: 10.1016/S0196-9781(03)00133-5  0.4
2003 Cai YD, Liu XJ, Chou KC. Prediction of protein secondary structure content by artificial neural network. Journal of Computational Chemistry. 24: 727-31. PMID 12666164 DOI: 10.1002/Jcc.10222  0.32
2003 Cai YD, Liu XJ, Xu XB, Chou KC. Support vector machines for the classification and prediction of beta-turn types. Journal of Peptide Science : An Official Publication of the European Peptide Society. 8: 297-301. PMID 12148778 DOI: 10.1002/Psc.401  0.44
2003 Cai YD, Liu XJ, Xu XB, Chou KC. Support Vector Machines for predicting HIV protease cleavage sites in protein. Journal of Computational Chemistry. 23: 267-74. PMID 11924738 DOI: 10.1002/Jcc.10017  0.36
2002 Cai YD, Liu XJ, Xu XB, Chou KC. Artificial neural network method for predicting protein secondary structure content. Computers & Chemistry. 26: 347-50. PMID 12139417 DOI: 10.1016/S0097-8485(01)00125-5  0.36
2002 Cai YD, Liu XJ, Xu XB, Chou KC. Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect. Journal of Cellular Biochemistry. 84: 343-8. PMID 11787063 DOI: 10.1002/Jcb.10030  0.4
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