| Year |
Citation |
Score |
| 2023 |
Filius M, van Wee R, Joo C. Single-Molecule FRET X. Methods in Molecular Biology (Clifton, N.J.). 2694: 203-213. PMID 37824006 DOI: 10.1007/978-1-0716-3377-9_10 |
0.406 |
|
| 2021 |
van Wee R, Filius M, Joo C. Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging. Trends in Biochemical Sciences. PMID 34247944 DOI: 10.1016/j.tibs.2021.05.010 |
0.33 |
|
| 2021 |
van Wee R, Filius M, Joo C. Completing the canvas: advances and challenges for DNA-PAINT super-resolution imaging. Trends in Biochemical Sciences. PMID 34247944 DOI: 10.1016/j.tibs.2021.05.010 |
0.33 |
|
| 2021 |
Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Jung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, ... ... Joo C, et al. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices. Elife. 10. PMID 33779550 DOI: 10.7554/eLife.60416 |
0.725 |
|
| 2021 |
Filius M, Kim SH, Severins I, Joo C. High-Resolution Single-Molecule FRET via DNA eXchange (FRET X). Nano Letters. PMID 33739111 DOI: 10.1021/acs.nanolett.1c00725 |
0.409 |
|
| 2020 |
Park KH, Kim S, Lee SJ, Cho JE, Patil VV, Dumbrepatil AB, Song HN, Ahn WC, Joo C, Lee SG, Shingler V, Woo EJ. Tetrameric architecture of an active phenol-bound form of the AAA transcriptional regulator DmpR. Nature Communications. 11: 2728. PMID 32483114 DOI: 10.1038/S41467-020-16562-5 |
0.33 |
|
| 2020 |
Filius M, Cui TJ, Ananth A, Docter MW, Hegge JW, Van Der Oost J, Joo C. High-Speed Super-Resolution Imaging Using Protein-Assisted DNA-PAINT. Nano Letters. PMID 32168456 DOI: 10.1021/Acs.Nanolett.9B04277 |
0.416 |
|
| 2020 |
Kim S, Loeff L, Colombo S, Jergic S, Brouns SJJ, Joo C. Selective loading and processing of prespacers for precise CRISPR adaptation. Nature. PMID 32076262 DOI: 10.1038/S41586-020-2018-1 |
0.426 |
|
| 2019 |
Restrepo-Pérez L, Wong CH, Maglia G, Dekker C, Joo C. Label-free detection of post-translational modifications with a nanopore. Nano Letters. PMID 31602979 DOI: 10.1021/Acs.Nanolett.9B03134 |
0.35 |
|
| 2019 |
Cui TJ, Klein M, Hegge JW, Chandradoss SD, van der Oost J, Depken M, Joo C. Argonaute bypasses cellular obstacles without hindrance during target search. Nature Communications. 10: 4390. PMID 31558728 DOI: 10.1038/S41467-019-12415-Y |
0.403 |
|
| 2019 |
Restrepo-Pérez L, Huang G, Bohländer PR, Worp N, Eelkema R, Maglia G, Joo C, Dekker C. Resolving Chemical Modifications to a Single Amino Acid within a Peptide Using a Biological Nanopore. Acs Nano. PMID 31536327 DOI: 10.1021/Acsnano.9B05156 |
0.373 |
|
| 2019 |
Hegge JW, Swarts DC, Chandradoss SD, Cui TJ, Kneppers J, Jinek M, Joo C, van der Oost J. DNA-guided DNA cleavage at moderate temperatures by Clostridium butyricum Argonaute. Nucleic Acids Research. PMID 31069393 DOI: 10.1093/Nar/Gkz306 |
0.396 |
|
| 2019 |
Cui TJ, Joo C. Facilitated diffusion of Argonaute-mediated target search. Rna Biology. PMID 31068066 DOI: 10.1080/15476286.2019.1616353 |
0.365 |
|
| 2019 |
Globyte V, Joo C. Single-molecule FRET studies of Cas9 endonuclease. Methods in Enzymology. 616: 313-335. PMID 30691649 DOI: 10.1016/Bs.Mie.2018.11.002 |
0.494 |
|
| 2018 |
Globyte V, Lee SH, Bae T, Kim JS, Joo C. CRISPR/Cas9 searches for a protospacer adjacent motif by lateral diffusion. The Embo Journal. PMID 30573670 DOI: 10.15252/Embj.201899466 |
0.37 |
|
| 2018 |
Severins I, Szczepaniak M, Joo C. Multiplex Single-Molecule DNA Barcoding Using an Oligonucleotide Ligation Assay. Biophysical Journal. PMID 30195940 DOI: 10.1016/J.Bpj.2018.08.013 |
0.49 |
|
| 2018 |
Restrepo-Pérez L, Joo C, Dekker C. Paving the way to single-molecule protein sequencing. Nature Nanotechnology. 13: 786-796. PMID 30190617 DOI: 10.1038/S41565-018-0236-6 |
0.419 |
|
| 2018 |
Fareh M, Joo C. Probing RNA-Protein Interactions with Single-Molecule Pull-Down Assays. Methods in Molecular Biology (Clifton, N.J.). 1814: 267-285. PMID 29956238 DOI: 10.1007/978-1-4939-8591-3_16 |
0.475 |
|
| 2018 |
Loeff L, Brouns SJJ, Joo C. Repetitive DNA Reeling by the Cascade-Cas3 Complex in Nucleotide Unwinding Steps. Molecular Cell. PMID 29706536 DOI: 10.1016/J.Molcel.2018.03.031 |
0.45 |
|
| 2018 |
Globyte V, Kim SH, Joo C. Single-Molecule View of Small RNA-Guided Target Search and Recognition. Annual Review of Biophysics. PMID 29595998 DOI: 10.1146/Annurev-Biophys-070317-032923 |
0.377 |
|
| 2018 |
van Ginkel J, Filius M, Szczepaniak M, Tulinski P, Meyer AS, Joo C. Single-molecule peptide fingerprinting. Proceedings of the National Academy of Sciences of the United States of America. PMID 29531063 DOI: 10.1073/Pnas.1707207115 |
0.375 |
|
| 2017 |
Klum SM, Chandradoss SD, Schirle NT, Joo C, MacRae IJ. Helix-7 in Argonaute2 shapes the microRNA seed region for rapid target recognition. The Embo Journal. PMID 28939659 DOI: 10.15252/Embj.201796474 |
0.318 |
|
| 2017 |
Kim SH, Ahn T, Cui TJ, Chauhan S, Sung J, Joo C, Kim D. RecA filament maintains structural integrity using ATP-driven internal dynamics. Science Advances. 3: e1700676. PMID 28913424 DOI: 10.1126/Sciadv.1700676 |
0.464 |
|
| 2017 |
Restrepo-Pérez L, John S, Aksimentiev A, Joo C, Dekker C. SDS-assisted protein transport through solid-state nanopores. Nanoscale. PMID 28776058 DOI: 10.1039/C7Nr02450A |
0.392 |
|
| 2017 |
Swarts DC, Szczepaniak M, Sheng G, Chandradoss SD, Zhu Y, Timmers EM, Zhang Y, Zhao H, Lou J, Wang Y, Joo C, van der Oost J. Autonomous Generation and Loading of DNA Guides by Bacterial Argonaute. Molecular Cell. PMID 28262506 DOI: 10.1016/J.Molcel.2017.01.033 |
0.441 |
|
| 2017 |
Filius M, van Ginkel J, Joo C. Engineering ClpXP for Single-Molecule Protein Sequencing Biophysical Journal. 112: 151a. DOI: 10.1016/J.Bpj.2016.11.830 |
0.364 |
|
| 2017 |
Fareh M, van Lopik J, Katechis I, van Rij R, Joo C. Single-Molecule Fluorescence Study of RNA Recognition by Viral RNAi Suppressors Biophysical Journal. 112: 151a. DOI: 10.1016/J.Bpj.2016.11.827 |
0.387 |
|
| 2017 |
Loeff L, Brouns S, Joo C. Repetitive Loop Formation by the CRISPR-Cas3 Helicase Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.430 |
0.421 |
|
| 2017 |
Globyte V, Lee SH, Loeff L, Kim JS, Joo C. Shedding Light on Cas9 Target Search Biophysical Journal. 112: 71. DOI: 10.1016/J.Bpj.2016.11.427 |
0.426 |
|
| 2017 |
Restrepo-Perez L, Soskine M, John S, Aksimentiev A, Maglia G, Joo C, Dekker C. Single-Molecule Protein Fingerprinting with Nanopores Biophysical Journal. 112: 330a. DOI: 10.1016/J.Bpj.2016.11.1789 |
0.402 |
|
| 2017 |
Ju Cui T, Chandradoss SD, Hegge J, van der Oost J, Joo C. Argonaute Target Search is Facilitated by Long Distance Diffusion Biophysical Journal. 112: 314a. DOI: 10.1016/J.Bpj.2016.11.1701 |
0.316 |
|
| 2016 |
Fareh M, Yeom KH, Haagsma AC, Chauhan S, Heo I, Joo C. TRBP ensures efficient Dicer processing of precursor microRNA in RNA-crowded environments. Nature Communications. 7: 13694. PMID 27934859 DOI: 10.1038/Ncomms13694 |
0.305 |
|
| 2016 |
Klein M, Chandradoss SD, Depken M, Joo C. Why Argonaute is needed to make microRNA target search fast and reliable. Seminars in Cell & Developmental Biology. PMID 27235676 DOI: 10.1016/J.Semcdb.2016.05.017 |
0.306 |
|
| 2016 |
Fareh M, Loeff L, Szczepaniak M, Haagsma AC, Yeom KH, Joo C. Single-molecule pull-down for investigating protein-nucleic acid interactions. Methods (San Diego, Calif.). PMID 27017911 DOI: 10.1016/J.Ymeth.2016.03.022 |
0.429 |
|
| 2015 |
Yao Y, Docter M, van Ginkel J, de Ridder D, Joo C. Single-molecule protein sequencing through fingerprinting: computational assessment. Physical Biology. 12: 055003. PMID 26266455 DOI: 10.1088/1478-3975/12/5/055003 |
0.377 |
|
| 2015 |
Blosser TR, Loeff L, Westra ER, Vlot M, Künne T, Sobota M, Dekker C, Brouns SJ, Joo C. Two distinct DNA binding modes guide dual roles of a CRISPR-Cas protein complex. Molecular Cell. 58: 60-70. PMID 25752578 DOI: 10.1016/J.Molcel.2015.01.028 |
0.37 |
|
| 2015 |
Kim TJ, Joo C, Seong J, Vafabakhsh R, Botvinick EL, Berns MW, Palmer AE, Wang N, Ha T, Jakobsson E, Sun J, Wang Y. Distinct mechanisms regulating mechanical force-induced Ca²⁺ signals at the plasma membrane and the ER in human MSCs. Elife. 4: e04876. PMID 25667984 DOI: 10.7554/Elife.04876 |
0.404 |
|
| 2015 |
Kim SH, Park J, Joo C, Kim D, Ha T. Dynamic growth and shrinkage govern the pH dependence of RecA filament stability. Plos One. 10: e0115611. PMID 25608006 DOI: 10.1371/Journal.Pone.0115611 |
0.643 |
|
| 2014 |
Kim SH, Ragunathan K, Park J, Joo C, Kim D, Ha T. Cooperative conformational transitions keep RecA filament active during ATPase cycle. Journal of the American Chemical Society. 136: 14796-800. PMID 25252114 DOI: 10.1021/Ja506363Y |
0.789 |
|
| 2014 |
Chandradoss SD, Haagsma AC, Lee YK, Hwang JH, Nam JM, Joo C. Surface passivation for single-molecule protein studies. Journal of Visualized Experiments : Jove. PMID 24797261 DOI: 10.3791/50549 |
0.356 |
|
| 2014 |
Kim T, Joo C, Seong J, Vafabakhsh R, Botvinick EL, Berns MW, Palmer AE, Wang N, Ha T, Jakobsson E, Sun J, Wang Y. Author response: Distinct mechanisms regulating mechanical force-induced Ca2+ signals at the plasma membrane and the ER in human MSCs Elife. DOI: 10.7554/Elife.04876.015 |
0.4 |
|
| 2014 |
Chandradoss SD, MacRae I, Joo C. Weak Interactions between Risc and mRNA Promote Optimal Targeting in RNA Interference Biophysical Journal. 106: 496a. DOI: 10.1016/J.Bpj.2013.11.2776 |
0.309 |
|
| 2014 |
Blosser T, Westra E, Loeff L, Dekker C, Brouns S, Joo C. Defense Against Viral Attack: Single-Molecule View on a Bacterial Adaptive Immune System Biophysical Journal. 106: 22a. DOI: 10.1016/J.Bpj.2013.11.178 |
0.412 |
|
| 2013 |
Kim SH, Joo C, Ha T, Kim D. Molecular mechanism of sequence-dependent stability of RecA filament. Nucleic Acids Research. 41: 7738-44. PMID 23804763 DOI: 10.1093/Nar/Gkt570 |
0.582 |
|
| 2013 |
Joo C, Fareh M, Kim VN. Bringing single-molecule spectroscopy to macromolecular protein complexes. Trends in Biochemical Sciences. 38: 30-7. PMID 23200186 DOI: 10.1016/J.Tibs.2012.10.005 |
0.484 |
|
| 2013 |
Kim D, Kim SH, Ahn TK, Joo C. RecA Filament Migration on a Single-Stranded DNA Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.464 |
0.478 |
|
| 2013 |
Kim SH, Ragunathan K, Park J, Joo C, Kim D, Ha T. The ATP Hydrolysis Cycle and the Corresponding Motion of RecA Filament on Single-Stranded DNA Biophysical Journal. 104. DOI: 10.1016/J.Bpj.2012.11.2998 |
0.788 |
|
| 2013 |
Ginkel Jv, Meyer A, Joo C. Unfolding and Degradation of Proteins by ClpXP Monitored with Single Molecule FRET Biophysical Journal. 104: 5-5. DOI: 10.1016/J.Bpj.2012.11.2849 |
0.413 |
|
| 2012 |
Joo C, Ha T. Single-molecule FRET with total internal reflection microscopy. Cold Spring Harbor Protocols. 2012. PMID 23209135 DOI: 10.1101/Pdb.Top072058 |
0.6 |
|
| 2012 |
Joo C, Ha T. Prism-type total internal reflection microscopy for single-molecule FRET. Cold Spring Harbor Protocols. 2012. PMID 23209134 DOI: 10.1101/Pdb.Prot072041 |
0.584 |
|
| 2012 |
Joo C, Ha T. Objective-type total internal reflection microscopy (emission) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1192-4. PMID 23118359 DOI: 10.1101/pdb.prot072033 |
0.523 |
|
| 2012 |
Joo C, Ha T. Objective-type total internal reflection microscopy (excitation) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1189-91. PMID 23118358 DOI: 10.1101/Pdb.Prot072025 |
0.576 |
|
| 2012 |
Joo C, Ha T. Imaging and identifying impurities in single-molecule FRET studies. Cold Spring Harbor Protocols. 2012: 1109-12. PMID 23028079 DOI: 10.1101/Pdb.Prot071548 |
0.61 |
|
| 2012 |
Joo C, Ha T. Preparing sample chambers for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1104-8. PMID 23028078 DOI: 10.1101/Pdb.Prot071530 |
0.598 |
|
| 2012 |
Joo C, Ha T. Labeling proteins for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1009-12. PMID 22949718 DOI: 10.1101/Pdb.Prot071035 |
0.585 |
|
| 2012 |
Joo C, Ha T. Labeling DNA (or RNA) for single-molecule FRET. Cold Spring Harbor Protocols. 2012: 1005-8. PMID 22949717 DOI: 10.1101/Pdb.Prot071027 |
0.618 |
|
| 2012 |
Diao J, Ishitsuka Y, Lee H, Joo C, Su Z, Syed S, Shin YK, Yoon TY, Ha T. A single vesicle-vesicle fusion assay for in vitro studies of SNAREs and accessory proteins. Nature Protocols. 7: 921-34. PMID 22582418 DOI: 10.1038/Nprot.2012.020 |
0.712 |
|
| 2012 |
Yeom K, Joo C. Single Molecule Observation of MicroRNA Processing Enzymes at Action Biophysical Journal. 102: 486a. DOI: 10.1016/J.Bpj.2011.11.2665 |
0.307 |
|
| 2011 |
Ragunathan K, Joo C, Ha T. Real-time observation of strand exchange reaction with high spatiotemporal resolution. Structure (London, England : 1993). 19: 1064-73. PMID 21827943 DOI: 10.1016/J.Str.2011.06.009 |
0.793 |
|
| 2011 |
Yeom KH, Heo I, Lee J, Hohng S, Kim VN, Joo C. Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation. Embo Reports. 12: 690-6. PMID 21637296 DOI: 10.1038/Embor.2011.100 |
0.45 |
|
| 2011 |
Yeom K, Heo I, Hohng S, Kim VN, Joo C. Simplex: Single Molecule Approach to Protein Complexes Biophysical Journal. 100: 3-9. DOI: 10.1016/J.Bpj.2010.12.2102 |
0.432 |
|
| 2011 |
Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. First Realization of Single-Molecule Four-Color FRET Biophysical Journal. 100. DOI: 10.1016/J.Bpj.2010.12.2101 |
0.775 |
|
| 2010 |
Lee J, Lee S, Ragunathan K, Joo C, Ha T, Hohng S. Single-molecule four-color FRET. Angewandte Chemie (International Ed. in English). 49: 9922-5. PMID 21104966 DOI: 10.1002/Anie.201005402 |
0.77 |
|
| 2010 |
Yeom K, Kim VN, Joo C. Single-Molecule Study on Microrna Machineries: Micrornaprocessing With Immunoprecipitates At the Single-Molecule Level Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.425 |
0.333 |
|
| 2008 |
Joo C, Balci H, Ishitsuka Y, Buranachai C, Ha T. Advances in single-molecule fluorescence methods for molecular biology. Annual Review of Biochemistry. 77: 51-76. PMID 18412538 DOI: 10.1146/Annurev.Biochem.77.070606.101543 |
0.581 |
|
| 2007 |
Cisse I, Okumus B, Joo C, Ha T. Fueling protein DNA interactions inside porous nanocontainers. Proceedings of the National Academy of Sciences of the United States of America. 104: 12646-50. PMID 17563361 DOI: 10.1073/Pnas.0610673104 |
0.785 |
|
| 2007 |
Cisse I, Okumus B, Joo C, Ha T. Erratum: Single-molecule chemistry and biology special feature: Fueling protein-DNA interactions inside porous nanocontainers (Proceedings of the National Academy of Sciences of the United States (July 31, 2007) 104: 31 (12646-12650) 10.1073/pnas.0610673104) Proceedings of the National Academy of Sciences of the United States of America. 104. DOI: 10.1073/Pnas.0707542104 |
0.756 |
|
| 2006 |
Joo C, McKinney SA, Nakamura M, Rasnik I, Myong S, Ha T. Real-time observation of RecA filament dynamics with single monomer resolution. Cell. 126: 515-27. PMID 16901785 DOI: 10.1016/J.Cell.2006.06.042 |
0.793 |
|
| 2006 |
McKinney SA, Joo C, Ha T. Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophysical Journal. 91: 1941-51. PMID 16766620 DOI: 10.1529/Biophysj.106.082487 |
0.725 |
|
| 2005 |
Myong S, Rasnik I, Joo C, Lohman TM, Ha T. Repetitive shuttling of a motor protein on DNA. Nature. 437: 1321-5. PMID 16251956 DOI: 10.1038/Nature04049 |
0.722 |
|
| 2004 |
Hohng S, Joo C, Ha T. Single-molecule three-color FRET Biophysical Journal. 87: 1328-1337. PMID 15298935 DOI: 10.1529/Biophysj.104.043935 |
0.601 |
|
| 2004 |
Joo C, McKinney SA, Lilley DM, Ha T. Exploring rare conformational species and ionic effects in DNA Holliday junctions using single-molecule spectroscopy. Journal of Molecular Biology. 341: 739-51. PMID 15288783 DOI: 10.1016/J.Jmb.2004.06.024 |
0.742 |
|
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