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Nicole M. Donofrio - Publications

Affiliations: 
Department of Plant and Soil Science University of Delaware, Newark, DE, United States 
Area:
Plant Pathology Agriculture, Molecular Biology, Microbiology Biology, Genetics
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37 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wockenfuss A, Chan K, Cooper JG, Chaya T, Mauriello MA, Yannarell SM, Maresca JA, Donofrio NM. A strain shows antimicrobial activity against soilborne and foliar fungi and oomycetes. Frontiers in Fungal Biology. 5: 1332755. PMID 38465255 DOI: 10.3389/ffunb.2024.1332755  0.337
2023 Cooper JG, Donofrio NM, Caplan JL, Chaya TR. Visualizing Early Infection Sites of Rice Blast Disease (Magnaporthe oryzae) on Barley (Hordeum vulgare) Using a Basic Microscope and a Smartphone. Journal of Visualized Experiments : Jove. PMID 37010277 DOI: 10.3791/64794  0.338
2021 Wisser RJ, Oppenheim SJ, Ernest EG, Mhora TT, Dumas MD, Gregory NF, Evans TA, Donofrio NM. Genome assembly of a Mesoamerican derived variety of lima bean: a foundational cultivar in the Mid-Atlantic USA. G3 (Bethesda, Md.). PMID 34542584 DOI: 10.1093/g3journal/jkab207  0.674
2020 Prusky D, de Assis LJ, Baroncelli R, Benito EP, del Castillo VC, Chaya T, Covo S, Díaz-Mínguez JM, Donofrio NM, Espeso E, Fernandes TR, Goldman GH, Judelson H, Nordzieke D, Di Pietro A, et al. Nutritional factors modulating plant and fruit susceptibility to pathogens: BARD workshop, Haifa, Israel, February 25–26, 2018 Phytoparasitica. 48: 317-333. DOI: 10.1007/S12600-020-00803-W  0.436
2019 Porto BN, Caixeta ET, Mathioni SM, Vidigal PMP, Zambolim L, Zambolim EM, Donofrio N, Polson SW, Maia TA, Chen C, Adetunji M, Kingham B, Dalio RJD, Resende MLV. Genome sequencing and transcript analysis of Hemileia vastatrix reveal expression dynamics of candidate effectors dependent on host compatibility. Plos One. 14: e0215598. PMID 30998802 DOI: 10.1371/Journal.Pone.0215598  0.765
2019 Davis RE, Shao J, Zhao Y, Wei W, Bottner-Parker K, Silver A, Stump Z, Gasparich GE, Donofrio N. Complete Genome Sequence of Spiroplasma phoeniceum Strain P40, a Plant Pathogen Isolated from Diseased Plants of Madagascar Periwinkle [ (L.) G. Don]. Microbiology Resource Announcements. 8. PMID 30938707 DOI: 10.1128/MRA.01612-18  0.335
2018 Raman V, Meyers BC, Dean RA, Donofrio NM. Characterizing Small RNAs in Filamentous Fungi Using the Rice Blast Fungus, Magnaporthe oryzae, as an Example. Methods in Molecular Biology (Clifton, N.J.). 1848: 53-66. PMID 30182228 DOI: 10.1007/978-1-4939-8724-5_5  0.374
2017 Todd AR, Donofrio N, Sripathi VR, McClean PE, Lee RK, Pastor-Corrales M, Kalavacharla VK. Marker-Assisted Molecular Profiling, Deletion Mutant Analysis, and RNA-Seq Reveal a Disease Resistance Cluster Associated with Uromyces appendiculatus Infection in Common Bean Phaseolus vulgaris L. International Journal of Molecular Sciences. 18. PMID 28545258 DOI: 10.3390/Ijms18061109  0.438
2017 Raman V, Simon SA, Demirci F, Nakano M, Meyers BC, Donofrio NM. Small RNA Functions Are Required for Growth and Development of Magnaporthe oryzae. Molecular Plant-Microbe Interactions : Mpmi. MPMI11160236R. PMID 28504560 DOI: 10.1094/Mpmi-11-16-0236-R  0.477
2017 Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N. Complete Genome Sequence of Spiroplasma citri Strain R8-A2(T), Causal Agent of Stubborn Disease in Citrus Species. Genome Announcements. 5. PMID 28428304 DOI: 10.1128/Genomea.00206-17  0.402
2016 Zhang N, Luo J, Rossman AY, Aoki T, Chuma I, Crous PW, Dean R, de Vries RP, Donofrio N, Hyde KD, Lebrun MH, Talbot NJ, Tharreau D, Tosa Y, Valent B, et al. Generic names in Magnaporthales. Ima Fungus. 7: 155-9. PMID 27433445 DOI: 10.5598/imafungus.2016.07.01.09  0.307
2016 Huang K, Caplan J, Sweigard J, Czymmek K, Donofrio N. Optimization of the HyPer sensor for robust real-time detection of hydrogen peroxide in the rice blast fungus. Molecular Plant Pathology. PMID 26950262 DOI: 10.1111/Mpp.12392  0.351
2016 Kness AA, Johnson G, Everts KL, Evans TA, Donofrio NM, Ernest EG. Managing Pod Rot of Lima Bean Caused by Phytophthora capsici with Fungicides in the Mid-Atlantic Region Plant Health Progress. 17: 130-132. DOI: 10.1094/Php-Br-16-0015  0.624
2015 Spence CA, Lakshmanan V, Donofrio N, Bais HP. Crucial Roles of Abscisic Acid Biogenesis in Virulence of Rice Blast Fungus Magnaporthe oryzae. Frontiers in Plant Science. 6: 1082. PMID 26648962 DOI: 10.3389/Fpls.2015.01082  0.435
2015 Davis RE, Shao J, Zhao Y, Gasparich GE, Gaynor BJ, Donofrio N. Complete Genome Sequence of Spiroplasma turonicum Strain Tab4cT, a Parasite of a Horse Fly, Haematopota sp. (Diptera: Tabanidae). Genome Announcements. 3. PMID 26586899 DOI: 10.1128/Genomea.01367-15  0.427
2015 Davis RE, Shao J, Dally EL, Zhao Y, Gasparich GE, Gaynor BJ, Athey JC, Harrison NA, Donofrio N. Complete Genome Sequence of Spiroplasma kunkelii Strain CR2-3x, Causal Agent of Corn Stunt Disease in Zea mays L. Genome Announcements. 3. PMID 26494665 DOI: 10.1128/Genomea.01216-15  0.403
2014 Donofrio NM, Wilson RA. Redox and rice blast: new tools for dissecting molecular fungal-plant interactions. The New Phytologist. 201: 367-9. PMID 26013301 DOI: 10.1111/Nph.12623  0.379
2014 Mäkelä MR, Donofrio N, Vries Rd. Editorial: Plant biomass degradation by fungi Fungal Genetics and Biology. 72. PMID 25241328 DOI: 10.1016/J.Fgb.2014.09.003  0.355
2014 Mäkelä MR, Donofrio N, Vries RPd. Plant biomass degradation by fungi Fungal Genetics and Biology. 72: 2-9. PMID 25192611 DOI: 10.1016/J.Fgb.2014.08.010  0.377
2014 Spence C, Alff E, Johnson C, Ramos C, Donofrio N, Sundaresan V, Bais H. Natural rice rhizospheric microbes suppress rice blast infections. Bmc Plant Biology. 14: 130. PMID 24884531 DOI: 10.1186/1471-2229-14-130  0.423
2014 Spence CA, Raman V, Donofrio NM, Bais HP. Global gene expression in rice blast pathogen Magnaporthe oryzae treated with a natural rice soil isolate. Planta. 239: 171-85. PMID 24126723 DOI: 10.1007/S00425-013-1974-1  0.497
2013 Mathioni SM, Patel N, Riddick B, Sweigard JA, Czymmek KJ, Caplan JL, Kunjeti SG, Kunjeti S, Raman V, Hillman BI, Kobayashi DY, Donofrio NM. Transcriptomics of the rice blast fungus Magnaporthe oryzae in response to the bacterial antagonist Lysobacter enzymogenes reveals candidate fungal defense response genes. Plos One. 8: e76487. PMID 24098512 DOI: 10.1371/Journal.Pone.0076487  0.706
2013 Raman V, Simon SA, Romag A, Demirci F, Mathioni SM, Zhai J, Meyers BC, Donofrio NM. Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae. Bmc Genomics. 14: 326. PMID 23663523 DOI: 10.1186/1471-2164-14-326  0.756
2012 Donofrio NM, Raman V. Roles and delivery mechanisms of fungal effectors during infection development: common threads and new directions. Current Opinion in Microbiology. 15: 692-8. PMID 23164582 DOI: 10.1016/J.Mib.2012.10.004  0.477
2012 Kunjeti SG, Evans TA, Marsh AG, Gregory NF, Kunjeti S, Meyers BC, Kalavacharla VS, Donofrio NM. RNA-Seq reveals infection-related global gene changes in Phytophthora phaseoli, the causal agent of lima bean downy mildew. Molecular Plant Pathology. 13: 454-66. PMID 22112294 DOI: 10.1111/J.1364-3703.2011.00761.X  0.723
2011 Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM. Suppression of plant-generated reactive oxygen species is required for successful infection by the rice blast fungus. Virulence. 2: 559-62. PMID 21971181 DOI: 10.4161/Viru.2.6.18007  0.446
2011 Mathioni SM, Beló A, Townsend JP, Donofrio NM. Getting the most out of your fungal microarray data: two cost- and time-effective methods. Methods in Molecular Biology (Clifton, N.J.). 722: 61-77. PMID 21590413 DOI: 10.1007/978-1-61779-040-9_5  0.706
2011 Huang K, Czymmek KJ, Caplan JL, Sweigard JA, Donofrio NM. HYR1-mediated detoxification of reactive oxygen species is required for full virulence in the rice blast fungus. Plos Pathogens. 7: e1001335. PMID 21533213 DOI: 10.1371/Journal.Ppat.1001335  0.524
2011 Mathioni SM, Beló A, Rizzo CJ, Dean RA, Donofrio NM. Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses. Bmc Genomics. 12: 49. PMID 21247492 DOI: 10.1186/1471-2164-12-49  0.748
2010 Raffaele S, Farrer RA, Cano LM, Studholme DJ, MacLean D, Thines M, Jiang RH, Zody MC, Kunjeti SG, Donofrio NM, Meyers BC, Nusbaum C, Kamoun S. Genome evolution following host jumps in the Irish potato famine pathogen lineage. Science (New York, N.Y.). 330: 1540-3. PMID 21148391 DOI: 10.1126/Science.1193070  0.766
2010 Rudrappa T, Biedrzycki ML, Kunjeti SG, Donofrio NM, Czymmek KJ, Paré PW, Bais HP. The rhizobacterial elicitor acetoin induces systemic resistance in Arabidopsis thaliana. Communicative & Integrative Biology. 3: 130-8. PMID 20585504 DOI: 10.4161/Cib.3.2.10584  0.738
2008 Oh Y, Donofrio N, Pan H, Coughlan S, Brown DE, Meng S, Mitchell T, Dean RA. Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae. Genome Biology. 9: R85. PMID 18492280 DOI: 10.1186/Gb-2008-9-5-R85  0.435
2007 Betts MF, Tucker SL, Galadima N, Meng Y, Patel G, Li L, Donofrio N, Floyd A, Nolin S, Brown D, Mandel MA, Mitchell TK, Xu JR, Dean RA, Farman ML, et al. Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae. Fungal Genetics and Biology : Fg & B. 44: 1035-49. PMID 17600737 DOI: 10.1016/J.Fgb.2007.05.001  0.381
2006 Donofrio NM, Oh Y, Lundy R, Pan H, Brown DE, Jeong JS, Coughlan S, Mitchell TK, Dean RA. Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea Fungal Genetics and Biology. 43: 605-617. PMID 16731015 DOI: 10.1016/J.Fgb.2006.03.005  0.472
2005 Dean R, Mitchell T, Donofrio N, Jeong JS, Powell A. Fungal biology reaps the benefit of genomics. Genome Biology. 6: 336. PMID 16086860 DOI: 10.1186/Gb-2005-6-8-336  0.374
2005 Dean RA, Talbot NJ, Ebbole DJ, Farman ML, Mitchell TK, Orbach MJ, Thon M, Kulkarni R, Xu JR, Pan H, Read ND, Lee YI, Carbone I, Brown D, Yeon YO, ... Donofrio N, et al. The genome sequence of the rice blast fungus Magnaporthe grisea Nature. 434: 980-986. PMID 15846337 DOI: 10.1038/Nature03449  0.523
2005 Donofrio N, Rajagopalon R, Brown D, Diener S, Windham D, Nolin S, Floyd A, Mitchell T, Galadima N, Tucker S, Orbach MJ, Patel G, Farman M, Pampanwar V, Soderlund C, et al. 'PACLIMS': a component LIM system for high-throughput functional genomic analysis. Bmc Bioinformatics. 6: 94. PMID 15826298 DOI: 10.1186/1471-2105-6-94  0.431
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