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Jason Brickner - Publications

Affiliations: 
Northwestern University, Evanston, IL 
Area:
Gene gating
Website:
http://www.ibis.northwestern.edu/faculty/brickner.html
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56 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 VanBelzen J, Duan C, Brickner DG, Brickner JH. ChEC-seq2: an improved Chromatin Endogenous Cleavage sequencing method and bioinformatic analysis pipeline for mapping protein-DNA interactions. Biorxiv : the Preprint Server For Biology. PMID 37905156 DOI: 10.1101/2023.10.15.562421  0.312
2023 Brickner JH. The nuclear pore complex as a platform for epigenetic regulation. The Journal of Cell Biology. 222. PMID 37603083 DOI: 10.1083/jcb.202307078  0.39
2023 Brickner JH. Inheritance of epigenetic transcriptional memory through read-write replication of a histone modification. Annals of the New York Academy of Sciences. PMID 37391188 DOI: 10.1111/nyas.15033  0.465
2022 Sump B, Brickner J. Establishment and inheritance of epigenetic transcriptional memory. Frontiers in Molecular Biosciences. 9: 977653. PMID 36120540 DOI: 10.3389/fmolb.2022.977653  0.852
2022 Sump B, Brickner DG, D'Urso A, Kim SH, Brickner JH. Mitotically heritable, RNA polymerase II-independent H3K4 dimethylation stimulates transcriptional memory. Elife. 11. PMID 35579426 DOI: 10.7554/eLife.77646  0.834
2021 Sumner MC, Brickner J. The Nuclear Pore Complex as a Transcription Regulator. Cold Spring Harbor Perspectives in Biology. PMID 34127448 DOI: 10.1101/cshperspect.a039438  0.824
2021 Sumner MC, Torrisi SB, Brickner DG, Brickner JH. Random sub-diffusion and capture of genes by the nuclear pore reduces dynamics and coordinates inter-chromosomal movement. Elife. 10. PMID 34002694 DOI: 10.7554/eLife.66238  0.758
2019 Brickner DG, Randise-Hinchliff C, Corbin ML, Liang JM, Kim S, Sump B, D'Urso A, Kim SH, Satomura A, Schmit H, Coukos R, Hwang S, Watson R, Brickner JH. The Role of Transcription Factors and Nuclear Pore Proteins in Controlling the Spatial Organization of the Yeast Genome. Developmental Cell. 49: 936-947.e4. PMID 31211995 DOI: 10.1016/j.devcel.2019.05.023  0.791
2017 Sump B, Brickner JH. Nup98 regulation of histone methylation promotes normal gene expression and may drive leukemogenesis. Genes & Development. 31: 2201-2203. PMID 29284709 DOI: 10.1101/gad.310359.117  0.829
2017 Sood V, Brickner JH. Genetic and Epigenetic Strategies Potentiate Gal4 Activation to Enhance Fitness in Recently Diverged Yeast Species. Current Biology : Cb. PMID 29153325 DOI: 10.1016/j.cub.2017.10.035  0.847
2017 Satomura A, Brickner JH. Nuclear Pore Complexes: A Scaffold Regulating Developmental Transcription? Trends in Cell Biology. PMID 28734734 DOI: 10.1016/j.tcb.2017.07.002  0.777
2017 Sood V, Cajigas I, D'Urso A, Light WH, Brickner JH. Epigenetic Transcriptional Memory of GAL Genes Depends on Growth in Glucose and the Tup1 Transcription Factor in Saccharomyces cerevisiae. Genetics. PMID 28607146 DOI: 10.1534/Genetics.117.201632  0.812
2017 D'Urso A, Brickner JH. Memory Is the Treasury and Guardian of All Things. Molecular Cell. 66: 5-6. PMID 28388441 DOI: 10.1016/j.molcel.2017.03.012  0.827
2017 Brickner J. Genetic and epigenetic control of the spatial organization of the genome. Molecular Biology of the Cell. 28: 364-369. PMID 28137949 DOI: 10.1091/Mbc.E16-03-0149  0.508
2016 D'Urso A, Brickner JH. Epigenetic transcriptional memory. Current Genetics. PMID 27807647 DOI: 10.1007/s00294-016-0661-8  0.804
2016 Brickner DG, Sood V, Tutucci E, Coukos R, Viets K, Singer R, Brickner JH. Subnuclear positioning and interchromosomal clustering of the GAL1-10 locus are controlled by separable, interdependent mechanisms. Molecular Biology of the Cell. PMID 27489341 DOI: 10.1091/Mbc.E16-03-0174  0.837
2016 Randise-Hinchliff C, Brickner JH. Transcription factors dynamically control the spatial organization of the yeast genome. Nucleus (Austin, Tex.). 0. PMID 27442220 DOI: 10.1080/19491034.2016.1212797  0.859
2016 D'Urso A, Takahashi YH, Xiong B, Marone J, Coukos R, Randise-Hinchliff C, Wang JP, Shilatifard A, Brickner JH. Set1/COMPASS and Mediator are repurposed to promote epigenetic transcriptional memory. Elife. 5. PMID 27336723 DOI: 10.7554/Elife.16691  0.829
2016 Randise-Hinchliff C, Coukos R, Sood V, Sumner MC, Zdraljevic S, Meldi Sholl L, Garvey Brickner D, Ahmed S, Watchmaker L, Brickner JH. Strategies to regulate transcription factor-mediated gene positioning and interchromosomal clustering at the nuclear periphery. The Journal of Cell Biology. PMID 26953353 DOI: 10.1083/Jcb.201508068  0.813
2015 Brickner DG, Coukos R, Brickner JH. INO1 transcriptional memory leads to DNA zip code-dependent interchromosomal clustering. Microbial Cell. 2: 481-490. PMID 26688804 DOI: 10.15698/mic2015.12.242  0.509
2014 Egecioglu DE, D'Urso A, Brickner DG, Light WH, Brickner JH. Approaches to studying subnuclear organization and gene-nuclear pore interactions. Methods in Cell Biology. 122: 463-85. PMID 24857743 DOI: 10.1016/B978-0-12-417160-2.00021-7  0.811
2014 D'Urso A, Brickner JH. Mechanisms of epigenetic memory. Trends in Genetics : Tig. 30: 230-6. PMID 24780085 DOI: 10.1016/j.tig.2014.04.004  0.827
2014 Sood V, Brickner JH. Nuclear pore interactions with the genome. Current Opinion in Genetics & Development. 25: 43-9. PMID 24480294 DOI: 10.1016/j.gde.2013.11.018  0.868
2013 Light WH, Brickner JH. Nuclear pore proteins regulate chromatin structure and transcriptional memory by a conserved mechanism. Nucleus (Austin, Tex.). 4: 357-60. PMID 23962805 DOI: 10.4161/Nucl.26209  0.868
2013 Light WH, Freaney J, Sood V, Thompson A, D'Urso A, Horvath CM, Brickner JH. A conserved role for human Nup98 in altering chromatin structure and promoting epigenetic transcriptional memory. Plos Biology. 11: e1001524. PMID 23555195 DOI: 10.1371/Journal.Pbio.1001524  0.831
2013 Gaur NA, Hasek J, Brickner DG, Qiu H, Zhang F, Wong CM, Malcova I, Vasicova P, Brickner JH, Hinnebusch AG. Vps factors are required for efficient transcription elongation in budding yeast. Genetics. 193: 829-51. PMID 23335340 DOI: 10.1534/Genetics.112.146308  0.509
2012 Randise-Hinchliff CE, Brickner JH. A new direction for gene looping. Developmental Cell. 23: 919-21. PMID 23153489 DOI: 10.1016/j.devcel.2012.10.024  0.785
2012 Brickner DG, Brickner JH. Interchromosomal clustering of active genes at the nuclear pore complex. Nucleus (Austin, Tex.). 3: 487-92. PMID 23099887 DOI: 10.4161/nucl.22663  0.536
2012 Brickner DG, Ahmed S, Meldi L, Thompson A, Light W, Young M, Hickman TL, Chu F, Fabre E, Brickner JH. Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery. Developmental Cell. 22: 1234-46. PMID 22579222 DOI: 10.1016/J.Devcel.2012.03.012  0.818
2011 Brickner JH. Nuclear architecture: the cell biology of a laminopathy. Current Biology : Cb. 21: R807-9. PMID 21996501 DOI: 10.1016/j.cub.2011.09.006  0.364
2011 Meldi L, Brickner JH. Compartmentalization of the nucleus. Trends in Cell Biology. 21: 701-8. PMID 21900010 DOI: 10.1016/j.tcb.2011.08.001  0.408
2011 Leung A, Cajigas I, Jia P, Ezhkova E, Brickner JH, Zhao Z, Geng F, Tansey WP. Histone H2B ubiquitylation and H3 lysine 4 methylation prevent ectopic silencing of euchromatic loci important for the cellular response to heat. Molecular Biology of the Cell. 22: 2741-53. PMID 21680712 DOI: 10.1091/Mbc.E11-05-0426  0.771
2011 Egecioglu D, Brickner JH. Gene positioning and expression. Current Opinion in Cell Biology. 23: 338-45. PMID 21292462 DOI: 10.1016/j.ceb.2011.01.001  0.846
2011 Brickner DG, Brickner JH. Gene positioning is regulated by phosphorylation of the nuclear pore complex by Cdk1. Cell Cycle (Georgetown, Tex.). 10: 392-5. PMID 21228627 DOI: 10.4161/cc.10.3.14644  0.595
2010 Ahmed S, Brickner JH. A role for DNA sequence in controlling the spatial organization of the genome. Nucleus (Austin, Tex.). 1: 402-6. PMID 21326823 DOI: 10.4161/Nucl.1.5.12637  0.685
2010 Brickner DG, Light W, Brickner JH. Quantitative localization of chromosomal loci by immunofluorescence. Methods in Enzymology. 470: 569-80. PMID 20946825 DOI: 10.1016/S0076-6879(10)70022-7  0.804
2010 Light WH, Brickner DG, Brand VR, Brickner JH. Interaction of a DNA zip code with the nuclear pore complex promotes H2A.Z incorporation and INO1 transcriptional memory. Molecular Cell. 40: 112-25. PMID 20932479 DOI: 10.1016/J.Molcel.2010.09.007  0.856
2010 Brickner DG, Brickner JH. Cdk phosphorylation of a nucleoporin controls localization of active genes through the cell cycle. Molecular Biology of the Cell. 21: 3421-32. PMID 20702586 DOI: 10.1091/mbc.E10-01-0065  0.413
2010 Brickner JH. Transcriptional memory: staying in the loop. Current Biology : Cb. 20: R20-1. PMID 20152138 DOI: 10.1016/j.cub.2009.11.013  0.564
2010 Ahmed S, Brickner DG, Light WH, Cajigas I, McDonough M, Froyshteter AB, Volpe T, Brickner JH. DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery. Nature Cell Biology. 12: 111-8. PMID 20098417 DOI: 10.1038/Ncb2011  0.839
2010 Ahmed S, Brickner DG, Light WH, Cajigas I, McDonough M, Froyshteter AB, Volpe T, Brickner JH. Erratum: DNA zip codes control an ancient mechanism for gene targeting to the nuclear periphery Nature Cell Biology. 12: 306-306. DOI: 10.1038/Ncb0310-306A  0.797
2009 Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner JH, Gerton JL. Cohesinopathy mutations disrupt the subnuclear organization of chromatin. The Journal of Cell Biology. 187: 455-62. PMID 19948494 DOI: 10.1083/Jcb.200906075  0.829
2009 Brickner JH. Transcriptional memory at the nuclear periphery. Current Opinion in Cell Biology. 21: 127-33. PMID 19181512 DOI: 10.1016/j.ceb.2009.01.007  0.586
2009 Gard S, Light W, Xiong B, Bose T, McNairn AJ, Harris B, Fleharty B, Seidel C, Brickner JH, Gerton JL. Cohesinopathy mutations disrupt the subnuclear organization of chromatin (The Journal of Cell Biology (2009) 187, 4, (455-462)) Journal of Cell Biology. 187: 749. DOI: 10.1083/Jcb.20090607520091116C  0.763
2007 Ahmed S, Brickner JH. Regulation and epigenetic control of transcription at the nuclear periphery. Trends in Genetics : Tig. 23: 396-402. PMID 17566592 DOI: 10.1016/J.Tig.2007.05.009  0.724
2007 Brickner DG, Cajigas I, Fondufe-Mittendorf Y, Ahmed S, Lee PC, Widom J, Brickner JH. H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state. Plos Biology. 5: e81. PMID 17373856 DOI: 10.1371/Journal.Pbio.0050081  0.849
2006 Walther TC, Brickner JH, Aguilar PS, Bernales S, Pantoja C, Walter P. Eisosomes mark static sites of endocytosis. Nature. 439: 998-1003. PMID 16496001 DOI: 10.1038/Nature04472  0.783
2005 Kaiser SE, Brickner JH, Reilein AR, Fenn TD, Walter P, Brunger AT. Structural basis of FFAT motif-mediated ER targeting. Structure (London, England : 1993). 13: 1035-45. PMID 16004875 DOI: 10.1016/j.str.2005.04.010  0.493
2004 Brickner JH, Walter P. Gene recruitment of the activated INO1 locus to the nuclear membrane. Plos Biology. 2: e342. PMID 15455074 DOI: 10.1371/Journal.Pbio.0020342  0.633
2004 Sipos G, Brickner JH, Brace EJ, Chen L, Rambourg A, Kepes F, Fuller RS. Soi3p/Rav1p functions at the early endosome to regulate endocytic trafficking to the vacuole and localization of trans-Golgi network transmembrane proteins. Molecular Biology of the Cell. 15: 3196-209. PMID 15090613 DOI: 10.1091/mbc.E03-10-0755  0.761
2001 Brickner JH, Blanchette JM, Sipos G, Fuller RS. The Tlg SNARE complex is required for TGN homotypic fusion. The Journal of Cell Biology. 155: 969-78. PMID 11739408 DOI: 10.1083/Jcb.200104093  0.754
1997 Brickner JH, Fuller RS. SOI1 encodes a novel, conserved protein that promotes TGN-endosomal cycling of Kex2p and other membrane proteins by modulating the function of two TGN localization signals. The Journal of Cell Biology. 139: 23-36. PMID 9314526 DOI: 10.1083/jcb.139.1.23  0.638
1996 Redding K, Brickner JH, Marschall LG, Nichols JW, Fuller RS. Allele-specific suppression of a defective trans-Golgi network (TGN) localization signal in Kex2p identifies three genes involved in localization of TGN transmembrane proteins. Molecular and Cellular Biology. 16: 6208-17. PMID 8887651 DOI: 10.1128/Mcb.16.11.6208  0.653
1996 Brickner JH, Lynch TJ, Zeilinger D, Orias E. Identification, mapping and linkage analysis of randomly amplified DNA polymorphisms in Tetrahymena thermophila. Genetics. 143: 811-21. PMID 8725229  0.243
1995 Lynch TJ, Brickner J, Nakano KJ, Orias E. Genetic map of randomly amplified DNA polymorphisms closely linked to the mating type locus of Tetrahymena thermophila. Genetics. 141: 1315-25. PMID 8601476  0.26
1994 Feaver WJ, Henry NL, Bushnell DA, Sayre MH, Brickner JH, Gileadi O, Kornberg RD. Yeast TFIIE. Cloning, expression, and homology to vertebrate proteins. The Journal of Biological Chemistry. 269: 27549-53. PMID 7961670  0.462
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