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Alexei V. Tkachenko - Publications

Affiliations: 
University of Michigan, Ann Arbor, Ann Arbor, MI 
Area:
Molecular Physics, General Biophysics
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Logan JA, Michelson A, Pattammattel A, Yan H, Gang O, Tkachenko AV. Symmetry-specific characterization of bond orientation order in DNA-assembled nanoparticle lattices. The Journal of Chemical Physics. 159. PMID 37862110 DOI: 10.1063/5.0168604  0.359
2022 Mushnoori S, Logan JA, Tkachenko AV, Dutt M. Controlling morphology in hybrid isotropic/patchy particle assemblies. The Journal of Chemical Physics. 156: 024501. PMID 35032996 DOI: 10.1063/5.0076914  0.318
2018 Patra N, Tkachenko AV. Programmable self-assembly of diamond polymorphs from chromatic patchy particles Physical Review E. 98. DOI: 10.1103/Physreve.98.032611  0.721
2017 Halverson JD, Tkachenko AV. Communication: Programmable self-assembly of thin-shell mesostructures. The Journal of Chemical Physics. 147: 141103. PMID 29031249 DOI: 10.1063/1.4999654  0.43
2017 Patra N, Tkachenko AV. Layer-by-layer assembly of patchy particles as a route to nontrivial structures. Physical Review. E. 96: 022601. PMID 28950567 DOI: 10.1103/Physreve.96.022601  0.73
2016 Tkachenko AV. Generic phase diagram of binary superlattices. Proceedings of the National Academy of Sciences of the United States of America. PMID 27566403 DOI: 10.1073/Pnas.1525358113  0.408
2016 Liu W, Halverson J, Tian Y, Tkachenko AV, Gang O. Self-organized architectures from assorted DNA-framed nanoparticles. Nature Chemistry. 8: 867-73. PMID 27554413 DOI: 10.1038/Nchem.2540  0.448
2016 Sutter E, Sutter P, Tkachenko AV, Krahne R, de Graaf J, Arciniegas M, Manna L. In situ microscopy of the self-assembly of branched nanocrystals in solution. Nature Communications. 7: 11213. PMID 27040366 DOI: 10.1038/Ncomms11213  0.442
2016 Halverson JD, Tkachenko AV. Sequential programmable self-assembly: Role of cooperative interactions. The Journal of Chemical Physics. 144: 094903. PMID 26957179 DOI: 10.1063/1.4942615  0.545
2016 Liu W, Tagawa M, Xin HL, Wang T, Emamy H, Li H, Yager KG, Starr FW, Tkachenko AV, Gang O. Diamond family of nanoparticle superlattices. Science (New York, N.Y.). 351: 582-6. PMID 26912698 DOI: 10.1126/Science.Aad2080  0.481
2016 Gang O, Tkachenko AV. DNA-programmable particle superlattices: Assembly, phases, and dynamic control Mrs Bulletin. 41: 381-387. DOI: 10.1557/Mrs.2016.92  0.56
2015 Vasilyev OA, Klumov BA, Tkachenko AV. Chromatic patchy particles: Effects of specific interactions on liquid structure. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 92: 012308. PMID 26274163 DOI: 10.1103/Physreve.92.012308  0.401
2015 Tkachenko AV, Maslov S. Spontaneous emergence of autocatalytic information-coding polymers. The Journal of Chemical Physics. 143: 045102. PMID 26233165 DOI: 10.1063/1.4922545  0.337
2014 Srivastava S, Nykypanchuk D, Fukuto M, Halverson JD, Tkachenko AV, Yager KG, Gang O. Two-dimensional DNA-programmable assembly of nanoparticles at liquid interfaces. Journal of the American Chemical Society. 136: 8323-32. PMID 24803304 DOI: 10.1021/Ja501749B  0.493
2013 Vasilyev OA, Klumov BA, Tkachenko AV. Precursors of order in aggregates of patchy particles. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 88: 012302. PMID 23944458 DOI: 10.1103/Physreve.88.012302  0.398
2013 Halverson JD, Tkachenko AV. DNA-programmed mesoscopic architecture. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 87: 062310. PMID 23848678 DOI: 10.1103/Physreve.87.062310  0.472
2013 Vial S, Nykypanchuk D, Yager KG, Tkachenko AV, Gang O. Linear mesostructures in DNA--nanorod self-assembly. Acs Nano. 7: 5437-45. PMID 23651346 DOI: 10.1021/Nn401413B  0.474
2013 Angioletti-Uberti S, Varilly P, Mognetti BM, Tkachenko AV, Frenkel D. Communication: a simple analytical formula for the free energy of ligand-receptor-mediated interactions. The Journal of Chemical Physics. 138: 021102. PMID 23320658 DOI: 10.1063/1.4775806  0.347
2013 Srivastava S, Nykypanchuk D, Maye MM, Tkachenko AV, Gang O. Super-compressible DNA nanoparticle lattices Soft Matter. 9: 10452-10457. DOI: 10.1039/C3Sm51289D  0.455
2012 Chi C, Vargas-Lara F, Tkachenko AV, Starr FW, Gang O. Internal structure of nanoparticle dimers linked by DNA. Acs Nano. 6: 6793-802. PMID 22793369 DOI: 10.1021/Nn301528H  0.495
2011 Martinez-Veracoechea FJ, Mladek BM, Tkachenko AV, Frenkel D. Design rule for colloidal crystals of DNA-functionalized particles. Physical Review Letters. 107: 045902. PMID 21867023 DOI: 10.1103/Physrevlett.107.045902  0.46
2011 Tkachenko AV. Theory of programmable hierarchic self-assembly. Physical Review Letters. 106: 255501. PMID 21770652 DOI: 10.1103/Physrevlett.106.255501  0.482
2011 Martinez-Veracoechea FJ, Mladek BM, Tkachenko AV, Frenkel D. Publisher’s Note: Design Rule for Colloidal Crystals of DNA-Functionalized Particles [Phys. Rev. Lett.107, 045902 (2011)] Physical Review Letters. 107. DOI: 10.1103/Physrevlett.107.079902  0.451
2010 Dreyfus R, Leunissen ME, Sha R, Tkachenko A, Seeman NC, Pine DJ, Chaikin PM. Aggregation-disaggregation transition of DNA-coated colloids: experiments and theory. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 81: 041404. PMID 20481724 DOI: 10.1103/Physreve.81.041404  0.478
2010 Wilson DP, Tkachenko AV, Meiners J. A generalized theory of DNA looping and cyclization Epl (Europhysics Letters). 89: 58005. DOI: 10.1209/0295-5075/89/58005  0.446
2009 Dreyfus R, Leunissen ME, Sha R, Tkachenko AV, Seeman NC, Pine DJ, Chaikin PM. Simple quantitative model for the reversible association of DNA coated colloids. Physical Review Letters. 102: 048301. PMID 19257481 DOI: 10.1103/Physrevlett.102.048301  0.493
2009 Licata NA, Tkachenko AV. Self-assembling DNA-caged particles: nanoblocks for hierarchical self-assembly. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 011404. PMID 19257032 DOI: 10.1103/Physreve.79.011404  0.79
2009 Wilson DP, Meiners J, Lillian T, Tkachenko A, Perkins NC. The Role of Sequence-Dependent Mechanics in DNA Looping Biophysical Journal. 96: 20a. DOI: 10.1016/J.Bpj.2008.12.1005  0.418
2008 Licata NA, Tkachenko AV. Kinetic limitations of cooperativity-based drug delivery systems. Physical Review Letters. 100: 158102. PMID 18518156 DOI: 10.1103/Physrevlett.100.158102  0.698
2008 Licata NA, Tkachenko AV. How to build nanoblocks using DNA scaffolds Epl (Europhysics Letters). 84: 20010. DOI: 10.1209/0295-5075/84/20010  0.785
2008 Licata NA, Tkachenko AV. Dynamics of particles with “key-lock” interactions Epl (Europhysics Letters). 81: 48009. DOI: 10.1209/0295-5075/81/48009  0.751
2007 Licata NA, Tkachenko AV. Colloids with key-lock interactions: nonexponential relaxation, aging, and anomalous diffusion. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 041405. PMID 17994986 DOI: 10.1103/Physreve.76.041405  0.745
2007 Popov YO, Tkachenko AV. Effects of sequence disorder on DNA looping and cyclization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 76: 021901. PMID 17930059 DOI: 10.1103/Physreve.76.021901  0.384
2007 Tkachenko AV. Elasticity of strongly stretched ssDNA Physica a: Statistical Mechanics and Its Applications. 384: 133-136. DOI: 10.1016/J.Physa.2007.04.119  0.328
2006 Tkachenko AV. Electrostatic effects in DNA stretching. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 041801. PMID 17155082 DOI: 10.1103/Physreve.74.041801  0.366
2006 Licata NA, Tkachenko AV. Statistical mechanics of DNA-mediated colloidal aggregation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 041408. PMID 17155058 DOI: 10.1103/Physreve.74.041408  0.771
2006 Licata NA, Tkachenko AV. Errorproof programmable self-assembly of DNA-nanoparticle clusters. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 041406. PMID 17155056 DOI: 10.1103/Physreve.74.041406  0.782
2006 Licata NA, Tkachenko AV. Self-assembly of DNA-coded nanoclusters. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 74: 040401. PMID 17155011 DOI: 10.1103/Physreve.74.040401  0.774
2005 Popov YO, Tkachenko AV. Effects of kinks on DNA elasticity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 71: 051905. PMID 16089569 DOI: 10.1103/Physreve.71.051905  0.4
2005 Blumberg S, Tkachenko AV, Meiners JC. Disruption of protein-mediated DNA looping by tension in the substrate DNA. Biophysical Journal. 88: 1692-701. PMID 15653717 DOI: 10.1529/Biophysj.104.054486  0.443
2004 Tkachenko AV. Unfolding and unzipping of single-stranded DNA by stretching. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 051901. PMID 15600650 DOI: 10.1103/Physreve.70.051901  0.438
2002 Tkachenko AV. Morphological diversity of DNA-colloidal self-assembly. Physical Review Letters. 89: 148303. PMID 12366080 DOI: 10.1103/Physrevlett.89.148303  0.56
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