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Kris Laukens, Ph.D. - Publications

Affiliations: 
2003 Universitaire Instelling Antwerpen (Belgium) 
Area:
Plant Physiology, Molecular Biology
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu Y, Zhang Y, Vennekens T, Lippens JL, Duijsens L, Bui-Thi D, Laukens K, de Vijlder T. MeRgeION: a Multifunctional R Pipeline for Small Molecule LC-MS/MS Data Processing, Searching, and Organizing. Analytical Chemistry. PMID 37218737 DOI: 10.1021/acs.analchem.2c04343  0.313
2021 Van Houtven J, Cuypers B, Meysman P, Hooyberghs J, Laukens K, Valkenborg D. Constrained Standardization of Count Data from Massive Parallel Sequencing. Journal of Molecular Biology. 433: 166966. PMID 33794260 DOI: 10.1016/j.jmb.2021.166966  0.373
2021 Bittremieux W, Adams C, Laukens K, Dorrestein PC, Bandeira N. Open Science Resources for the Mass Spectrometry-Based Analysis of SARS-CoV-2. Journal of Proteome Research. PMID 33605735 DOI: 10.1021/acs.jproteome.0c00929  0.311
2020 Van Houtven J, Boonen K, Baggerman G, Askenazi M, Laukens K, Hooyberghs J, Valkenborg D. PRiSM: a prototype for exhaustive, restriction-free database searching for mass spectrometry-based identification. Rapid Communications in Mass Spectrometry : Rcm. e8962. PMID 33009686 DOI: 10.1002/rcm.8962  0.361
2020 Liu Y, Mrzic A, Meysman P, De Vijlder T, Romijn EP, Valkenborg D, Bittremieux W, Laukens K. MESSAR: Automated recommendation of metabolite substructures from tandem mass spectra. Plos One. 15: e0226770. PMID 31945070 DOI: 10.1371/journal.pone.0226770  0.365
2019 Agten A, Van Houtven J, Askenazi M, Burzykowski T, Laukens K, Valkenborg D. Visualizing the agreement of peptide assignments between different search engines. Journal of Mass Spectrometry : Jms. PMID 31713933 DOI: 10.1002/jms.4471  0.3
2019 Bittremieux W, Laukens K, Noble WS. Extremely Fast and Accurate Open Modification Spectral Library Searching of High-Resolution Mass Spectra Using Feature Hashing and Graphics Processing Units. Journal of Proteome Research. PMID 31448616 DOI: 10.1021/acs.jproteome.9b00291  0.389
2019 Lermyte F, Dittwald P, Claesen J, Baggerman G, Sobott F, O'Connor PB, Laukens K, Hooyberghs J, Gambin A, Valkenborg D. MIND: A double-linear model to accurately determine monoisotopic precursor mass in high-resolution top-down proteomics. Analytical Chemistry. PMID 31283196 DOI: 10.1021/Acs.Analchem.9B02682  0.308
2019 Van Houtven J, Agten A, Boonen K, Baggerman G, Hooyberghs J, Laukens K, Valkenborg D. QCQuan: A Web Tool for the Automated Assessment of Protein Expression and Data Quality of Labeled Mass Spectrometry Experiments. Journal of Proteome Research. PMID 30942071 DOI: 10.1021/Acs.Jproteome.9B00072  0.386
2018 Bittremieux W, Meysman P, Noble WS, Laukens K. Fast open modification spectral library searching through approximate nearest neighbor indexing. Journal of Proteome Research. PMID 30184435 DOI: 10.1021/acs.jproteome.8b00359  0.37
2018 Beirnaert C, Meysman P, Vu TN, Hermans N, Apers S, Pieters L, Covaci A, Laukens K. speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification. Plos Computational Biology. 14: e1006018. PMID 29494588 DOI: 10.1371/Journal.Pcbi.1006018  0.319
2016 Titeca K, Meysman P, Gevaert K, Tavernier J, Laukens K, Martens L, Eyckerman S. SFINX: Straightforward Filtering Index for Affinity Purification-Mass Spectrometry Data Analysis. Journal of Proteome Research. 15: 332-8. PMID 26616242 DOI: 10.1021/Acs.Jproteome.5B00666  0.385
2016 Moretto M, Sonego P, Dierckxsens N, Brilli M, Bianco L, Ledezma-Tejeida D, Gama-Castro S, Galardini M, Romualdi C, Laukens K, Collado-Vides J, Meysman P, Engelen K. COLOMBOS v3.0: leveraging gene expression compendia for cross-species analyses. Nucleic Acids Research. 44: D620-3. PMID 26586805 DOI: 10.1093/nar/gkv1251  0.313
2015 Kelchtermans P, Silva AS, Argentini A, Staes A, Vandenbussche J, Laukens K, Valkenborg D, Martens L. Open-Source, Platform-Independent Library and Online Scripting Environment for Accessing Thermo Scientific RAW Files. Journal of Proteome Research. 14: 4940-3. PMID 26477298 DOI: 10.1021/Acs.Jproteome.5B00778  0.443
2015 Bittremieux W, Willems H, Kelchtermans P, Martens L, Laukens K, Valkenborg D. iMonDB: Mass Spectrometry Quality Control through Instrument Monitoring. Journal of Proteome Research. 14: 2360-6. PMID 25798920 DOI: 10.1021/Acs.Jproteome.5B00127  0.319
2015 Laukens K, Naulaerts S, Berghe WV. Bioinformatics approaches for the functional interpretation of protein lists: from ontology term enrichment to network analysis. Proteomics. 15: 981-96. PMID 25430566 DOI: 10.1002/pmic.201400296  0.305
2014 Vu TN, Mrzic A, Valkenborg D, Maes E, Lemière F, Goethals B, Laukens K. Unravelling associations between unassigned mass spectrometry peaks with frequent itemset mining techniques. Proteome Science. 12: 54. PMID 25429250 DOI: 10.1186/S12953-014-0054-1  0.399
2014 Dittwald P, Nghia VT, Harris GA, Caprioli RM, Van de Plas R, Laukens K, Gambin A, Valkenborg D. Towards automated discrimination of lipids versus peptides from full scan mass spectra. Eupa Open Proteomics. 4: 87-100. PMID 25414814 DOI: 10.1016/J.Euprot.2014.05.002  0.363
2014 Vu TN, Bittremieux W, Valkenborg D, Goethals B, Lemière F, Laukens K. Efficient reduction of candidate matches in peptide spectrum library searching using the top k most intense peaks. Journal of Proteome Research. 13: 4175-83. PMID 25004400 DOI: 10.1021/Pr401269Z  0.324
2014 Bittremieux W, Kelchtermans P, Valkenborg D, Martens L, Laukens K. jqcML: an open-source java API for mass spectrometry quality control data in the qcML format. Journal of Proteome Research. 13: 3484-7. PMID 24906114 DOI: 10.1021/Pr401274Z  0.325
2014 Ghavidel FZ, Mertens I, Baggerman G, Laukens K, Burzykowski T, Valkenborg D. The use of the isotopic distribution as a complementary quality metric to assess tandem mass spectra results. Journal of Proteomics. 98: 150-8. PMID 24384257 DOI: 10.1016/j.jprot.2013.12.013  0.381
2007 Thomsen AL, Laukens K, Matthiesen R, Jensen ON. Organization of proteomics data with YassDB. Methods in Molecular Biology (Clifton, N.J.). 367: 271-87. PMID 17185782 DOI: 10.1385/1-59745-275-0:271  0.365
2006 Laukens K, Matthiesen R, Lemière F, Esmans E, Onckelen HV, Jensen ON, Witters E. Integration of gel-based proteome data with pProRep. Bioinformatics (Oxford, England). 22: 2838-40. PMID 17032679 DOI: 10.1093/Bioinformatics/Btl487  0.307
2003 Witters E, Laukens K, Deckers P, Van Dongen W, Esmans E, Van Onckelen H. Fast liquid chromatography coupled to electrospray tandem mass spectrometry peptide sequencing for cross-species protein identification. Rapid Communications in Mass Spectrometry : Rcm. 17: 2188-94. PMID 14515316 DOI: 10.1002/Rcm.1173  0.362
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