| Year |
Citation |
Score |
| 2023 |
Guth-Metzler R, Mohamed AM, Cowan ET, Henning A, Ito C, Frenkel-Pinter M, Wartell RM, Glass JB, Williams LD. Goldilocks and RNA: where Mg2+ concentration is just right. Nucleic Acids Research. PMID 36987860 DOI: 10.1093/nar/gkad124 |
0.306 |
|
| 2019 |
Mestre-Fos S, Penev PI, Suttapitugsakul S, Ito C, Petrov AS, Wartell RM, Wu R, Williams LD. G-Quadruplexes in Human Ribosomal RNA. Journal of Molecular Biology. PMID 30885721 DOI: 10.1016/J.Jmb.2019.03.010 |
0.375 |
|
| 2018 |
Wartell RM. Improving the accuracy of the nearest neighbor model of DNA melting: Comment on "DNA melting and energetics of the double helix" by Alexander Vologodskii and Maxim D. Frank-Kamenetskii. Physics of Life Reviews. PMID 29402749 DOI: 10.1016/J.Plrev.2018.01.014 |
0.419 |
|
| 2017 |
Chang CL, Fridman AS, Wartell RM, Hu CK, Lando DY. Relationship between calorimetric profiles and differential melting curves for natural DNAs. International Journal of Biological Macromolecules. PMID 28431946 DOI: 10.1016/J.Ijbiomac.2017.04.048 |
0.429 |
|
| 2016 |
Ramos LM, Smeekens JM, Kovacs NA, Bowman JC, Wartell RM, Wu R, Williams LD. Yeast rRNA Expansion Segments: Folding and Function. Journal of Molecular Biology. PMID 27521697 DOI: 10.1016/J.Jmb.2016.08.008 |
0.425 |
|
| 2016 |
Lanier KA, Athavale SS, Petrov AS, Wartell RM, Williams LD. Imprint of Ancient Evolution on rRNA Folding. Biochemistry. PMID 27428664 DOI: 10.1021/Acs.Biochem.6B00168 |
0.361 |
|
| 2016 |
Lie L, Biliya S, Vannberg F, Wartell RM. Ligation of RNA Oligomers by the Schistosoma mansoni Hammerhead Ribozyme in Frozen Solution. Journal of Molecular Evolution. PMID 26897022 DOI: 10.1007/S00239-016-9729-9 |
0.402 |
|
| 2015 |
Petrov AS, Gulen B, Norris AM, Kovacs NA, Bernier CR, Lanier KA, Fox GE, Harvey SC, Wartell RM, Hud NV, Williams LD. History of the ribosome and the origin of translation. Proceedings of the National Academy of Sciences of the United States of America. PMID 26621738 DOI: 10.1073/Pnas.1509761112 |
0.374 |
|
| 2014 |
Petrov AS, Bernier CR, Hsiao C, Norris AM, Kovacs NA, Waterbury CC, Stepanov VG, Harvey SC, Fox GE, Wartell RM, Hud NV, Williams LD. Evolution of the ribosome at atomic resolution. Proceedings of the National Academy of Sciences of the United States of America. 111: 10251-6. PMID 24982194 DOI: 10.1073/Pnas.1407205111 |
0.346 |
|
| 2013 |
Hsiao C, Chou IC, Okafor CD, Bowman JC, O'Neill EB, Athavale SS, Petrov AS, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA with iron(II) as a cofactor catalyses electron transfer. Nature Chemistry. 5: 525-8. PMID 23695635 DOI: 10.1038/Nchem.1649 |
0.358 |
|
| 2013 |
Hsiao C, Lenz TK, Peters JK, Fang PY, Schneider DM, Anderson EJ, Preeprem T, Bowman JC, O'Neill EB, Lie L, Athavale SS, Gossett JJ, Trippe C, Murray J, Petrov AS, ... Wartell RM, et al. Molecular paleontology: a biochemical model of the ancestral ribosome. Nucleic Acids Research. 41: 3373-85. PMID 23355613 DOI: 10.1093/Nar/Gkt023 |
0.346 |
|
| 2012 |
Athavale SS, Petrov AS, Hsiao C, Watkins D, Prickett CD, Gossett JJ, Lie L, Bowman JC, O'Neill E, Bernier CR, Hud NV, Wartell RM, Harvey SC, Williams LD. RNA folding and catalysis mediated by iron (II). Plos One. 7: e38024. PMID 22701543 DOI: 10.1371/Journal.Pone.0038024 |
0.369 |
|
| 2011 |
Updegrove TB, Wartell RM. The influence of Escherichia coli Hfq mutations on RNA binding and sRNA•mRNA duplex formation in rpoS riboregulation. Biochimica Et Biophysica Acta. 1809: 532-40. PMID 21889623 DOI: 10.1016/J.Bbagrm.2011.08.006 |
0.746 |
|
| 2011 |
Updegrove TB, Correia JJ, Chen Y, Terry C, Wartell RM. The stoichiometry of the Escherichia coli Hfq protein bound to RNA. Rna (New York, N.Y.). 17: 489-500. PMID 21205841 DOI: 10.1261/Rna.2452111 |
0.761 |
|
| 2011 |
Jain K, Updegrove TB, Wartell RM. A thermodynamic perspective of sRNA-mRNA interactions and the role of Hfq Acs Symposium Series. 1082: 111-131. DOI: 10.1021/bk-2011-1082.ch007 |
0.695 |
|
| 2010 |
Mohan S, Hsiao C, Bowman JC, Wartell R, Williams LD. RNA tetraloop folding reveals tension between backbone restraints and molecular interactions. Journal of the American Chemical Society. 132: 12679-89. PMID 20726568 DOI: 10.1021/Ja104387K |
0.423 |
|
| 2010 |
Updegrove TB, Correia JJ, Galletto R, Bujalowski W, Wartell RM. E. coli DNA associated with isolated Hfq interacts with Hfq's distal surface and C-terminal domain. Biochimica Et Biophysica Acta. 1799: 588-96. PMID 20619373 DOI: 10.1016/J.Bbagrm.2010.06.007 |
0.77 |
|
| 2009 |
Mohan S, Hsiao C, VanDeusen H, Gallagher R, Krohn E, Kalahar B, Wartell RM, Williams LD. Mechanism of RNA double helix-propagation at atomic resolution. The Journal of Physical Chemistry. B. 113: 2614-23. PMID 19708202 DOI: 10.1021/Jp8039884 |
0.437 |
|
| 2009 |
Galyuk EN, Wartell RM, Dosin YM, Lando DY. DNA denaturation under freezing in alkaline medium. Journal of Biomolecular Structure & Dynamics. 26: 517-23. PMID 19108591 DOI: 10.1080/07391102.2009.10507267 |
0.371 |
|
| 2008 |
Updegrove T, Wilf N, Sun X, Wartell RM. Effect of Hfq on RprA-rpoS mRNA pairing: Hfq-RNA binding and the influence of the 5' rpoS mRNA leader region. Biochemistry. 47: 11184-95. PMID 18826256 DOI: 10.1021/Bi800479P |
0.777 |
|
| 2007 |
Sun X, Li JM, Wartell RM. Conversion of stable RNA hairpin to a metastable dimer in frozen solution. Rna (New York, N.Y.). 13: 2277-86. PMID 17925345 DOI: 10.1261/Rna.433307 |
0.596 |
|
| 2006 |
Sun X, Wartell RM. Escherichia coli Hfq binds A18 and DsrA domain II with similar 2:1 Hfq6/RNA stoichiometry using different surface sites. Biochemistry. 45: 4875-87. PMID 16605255 DOI: 10.1021/Bi0523613 |
0.605 |
|
| 2005 |
Bourdélat-Parks BN, Wartell RM. Thermodynamics of RNA duplexes with tandem mismatches containing a uracil-uracil pair flanked by C.G/G.C or G.C/A.U closing base pairs. Biochemistry. 44: 16710-7. PMID 16342961 DOI: 10.1021/Bi051659Q |
0.76 |
|
| 2004 |
Bourdélat-Parks BN, Wartell RM. Thermodynamic stability of DNA tandem mismatches. Biochemistry. 43: 9918-25. PMID 15274646 DOI: 10.1021/Bi049161W |
0.743 |
|
| 2003 |
Li J, Bourdelat-Parks B, Boatright JH, Wartell RM. Targeting degradation of RNA by RNase H using DNA hairpins. Biochemistry. 42: 10945-54. PMID 12974629 DOI: 10.1021/Bi034897Z |
0.768 |
|
| 2003 |
Fridman AS, Brabec V, Haroutiunian SG, Wartell RM, Lando DY. Melting of cross-linked DNA v. cross-linking effect caused by local stabilization of the double helix. Journal of Biomolecular Structure & Dynamics. 20: 533-45. PMID 12529152 DOI: 10.1080/07391102.2003.10506870 |
0.418 |
|
| 2003 |
Lando DY, Fridman AS, Wartell R. Thermodynamics of DNA containing very stable chemically modified base pairs. Journal of Biomolecular Structure & Dynamics. 20: 519-31. PMID 12529151 DOI: 10.1080/07391102.2003.10506869 |
0.48 |
|
| 2002 |
Sun X, Zhulin I, Wartell RM. Predicted structure and phyletic distribution of the RNA-binding protein Hfq. Nucleic Acids Research. 30: 3662-71. PMID 12202750 DOI: 10.1093/Nar/Gkf508 |
0.545 |
|
| 1999 |
Zhu J, Wartell RM. The effect of base sequence on the stability of RNA and DNA single base bulges. Biochemistry. 38: 15986-93. PMID 10625466 DOI: 10.1021/Bi9916372 |
0.464 |
|
| 1999 |
Nam KH, Abhiraman S, Wartell RM. The formation of adjacent triplex-duplex domainsin DNA. Nucleic Acids Research. 27: 859-65. PMID 9889284 DOI: 10.1093/Nar/27.3.859 |
0.51 |
|
| 1998 |
Johnson T, Zhu J, Wartell RM. Differences between DNA base pair stacking energies are conserved over a wide range of ionic conditions. Biochemistry. 37: 12343-50. PMID 9724548 DOI: 10.1021/Bi981093O |
0.468 |
|
| 1998 |
Wartell RM, Hosseini S, Powell S, Zhu J. Detecting single base substitutions, mismatches and bulges in DNA by temperature gradient gel electrophoresis and related methods. Journal of Chromatography. A. 806: 169-85. PMID 9639888 DOI: 10.1016/S0021-9673(98)00149-6 |
0.416 |
|
| 1998 |
Li J, Wartell RM. RNase H1 can catalyze RNA/DNA hybrid formation and cleavage with stable hairpin or duplex DNA oligomers. Biochemistry. 37: 5154-61. PMID 9548746 DOI: 10.1021/Bi9730801 |
0.55 |
|
| 1998 |
Li J, Wartell RM. The base-paired strand of a stable hairpin DNA can template RNase H cleavage of a RNA target site. A potential stringency clamp approach to antisense strategy Faseb Journal. 12: A775. |
0.399 |
|
| 1997 |
Zhu J, Wartell RM. The relative stabilities of base pair stacking interactions and single mismatches in long RNA measured by temperature gradient gel electrophoresis. Biochemistry. 36: 15326-35. PMID 9398261 DOI: 10.1021/Bi9716783 |
0.51 |
|
| 1996 |
Ke SH, Wartell RM. The thermal stability of DNA fragments with tandem mismatches at a d(CXYG).d(CY'X'G) site. Nucleic Acids Research. 24: 707-12. PMID 8604314 DOI: 10.1093/Nar/24.4.707 |
0.472 |
|
| 1995 |
Ke SH, Wartell RM. Influence of neighboring base pairs on the stability of single base bulges and base pairs in a DNA fragment. Biochemistry. 34: 4593-600. PMID 7718561 DOI: 10.1021/Bi00014A012 |
0.483 |
|
| 1994 |
Gaal T, Rao L, Estrem ST, Yang J, Wartell RM, Gourse RL. Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoter. Nucleic Acids Research. 22: 2344-50. PMID 8036162 DOI: 10.1093/Nar/22.12.2344 |
0.459 |
|
| 1994 |
Brossette S, Wartell RM. A program for selecting DNA fragments to detect mutations by denaturing gel electrophoresis methods. Nucleic Acids Research. 22: 4321-5. PMID 7937161 DOI: 10.1093/Nar/22.20.4321 |
0.335 |
|
| 1993 |
Ke SH, Kelly PJ, Wartell RM, Hunter S, Varma VA. Selecting DNA fragments for mutation detection by temperature gradient gel electrophoresis: application to the p53 gene cDNA. Electrophoresis. 14: 561-5. PMID 8375344 DOI: 10.1002/Elps.1150140188 |
0.434 |
|
| 1993 |
Ke SH, Wartell RM. Influence of nearest neighbor sequence on the stability of base pair mismatches in long DNA; determination by temperature-gradient gel electrophoresis. Nucleic Acids Research. 21: 5137-43. PMID 8255768 DOI: 10.1093/Nar/21.22.5137 |
0.467 |
|
| 1991 |
Tan GS, Kelly P, Kim J, Wartell RM. Comparison of cAMP receptor protein (CRP) and a cAMP-independent form of CRP by Raman spectroscopy and DNA binding. Biochemistry. 30: 5076-80. PMID 1645189 DOI: 10.1021/Bi00234A034 |
0.382 |
|
| 1990 |
Wartell RM, Hosseini SH, Moran CP. Detecting base pair substitutions in DNA fragments by temperature-gradient gel electrophoresis. Nucleic Acids Research. 18: 2699-705. PMID 2339057 DOI: 10.1093/Nar/18.9.2699 |
0.391 |
|
| 1989 |
McCampbell CR, Wartell RM, Plaskon RR. Inverted repeat sequences can influence the melting transitions of linear DNAs. Biopolymers. 28: 1745-58. PMID 2597728 DOI: 10.1002/Bip.360281008 |
0.474 |
|
| 1988 |
DeGrazia H, Brown D, Cheung S, Wartell RM. Solution conformations of DNAs containing binding sites of the catabolite gene activator protein and lac repressor protein: characterization by Raman spectroscopy. Biochemistry. 27: 6359-65. PMID 2851322 DOI: 10.1021/Bi00417A025 |
0.443 |
|
| 1987 |
Plaskon RR, Wartell RM. Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters. Nucleic Acids Research. 15: 785-96. PMID 3547329 DOI: 10.1093/Nar/15.2.785 |
0.43 |
|
| 1987 |
Dripps D, Wartell RM. DNA bending induced by the catabolite activator protein allows ring formation of a 144 bp DNA. Journal of Biomolecular Structure & Dynamics. 5: 1-13. PMID 2856026 DOI: 10.1080/07391102.1987.10506370 |
0.419 |
|
| 1986 |
Jenkins BG, Wartell RM, Alderfer JL. Conformational properties of poly[d(G-T)].poly[d(C-A)] and poly[d(A-T)] in low- and high-salt solutions: NMR and laser Raman analysis. Biopolymers. 25: 823-49. PMID 3755066 DOI: 10.1002/Bip.360250507 |
0.314 |
|
| 1986 |
Wartell RM, Harrell JT. Characteristics and variations of B-type DNA conformations in solution: a quantitative analysis of Raman band intensities of eight DNAs. Biochemistry. 25: 2664-71. PMID 3718971 DOI: 10.1021/Bi00357A056 |
0.355 |
|
| 1985 |
DeGrazia H, Abhiraman S, Wartell RM. The catabolite activator protein stabilizes its binding site in the E. coli lactose promoter. Nucleic Acids Research. 13: 7483-98. PMID 3903664 DOI: 10.1093/Nar/13.20.7483 |
0.48 |
|
| 1985 |
Wartell RM, Benight AS. Thermal denaturation of DNA molecules: A comparison of theory with experiment Physics Reports. 126: 67-107. DOI: 10.1016/0370-1573(85)90060-2 |
0.696 |
|
| 1983 |
Wells RD, Brennan R, Chapman KA, Goodman TC, Hart PA, Hillen W, Kellogg DR, Kilpatrick MW, Klein RD, Klysik J, Lambert PF, Larson JE, Miglietta JJ, Neuendorf SK, O'Connor TR, ... ... Wartell RM, et al. Left-handed DNA helices, supercoiling, and the B-Z junction. Cold Spring Harbor Symposia On Quantitative Biology. 47: 77-84. PMID 6345066 DOI: 10.1101/Sqb.1983.047.01.010 |
0.355 |
|
| 1983 |
Benight AS, Wartell RM. Influence of base-pair changes and cooperativity parameters on the melting curves of short DNAs. Biopolymers. 22: 1409-25. PMID 6307412 DOI: 10.1002/Bip.360220512 |
0.68 |
|
| 1983 |
Wartell RM, Harrell JT, Zacharias W, Wells RD. Raman spectroscopy study of the B-Z transition in (dG-dC)n.(dG-dC)n and a DNA restriction fragment. Journal of Biomolecular Structure & Dynamics. 1: 83-96. PMID 6101084 DOI: 10.1080/07391102.1983.10507427 |
0.371 |
|
| 1982 |
Wartell RM, Benight AS. Fluctuational base-pair opening in DNA at temperatures below the helix-coil transition region. Biopolymers. 21: 2069-81. PMID 7171728 DOI: 10.1002/Bip.360211011 |
0.713 |
|
| 1982 |
Martin JC, Wartell RM. Changes in raman vibrational bands of calf thymus DNA during the B-to-A transition. Biopolymers. 21: 499-512. PMID 7066469 DOI: 10.1002/Bip.360210303 |
0.311 |
|
| 1982 |
Wartell RM, Klysik J, Hillen W, Wells RD. Junction between Z and B conformations in a DNA restriction fragment: evaluation by Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 79: 2549-53. PMID 7045865 DOI: 10.1073/Pnas.79.8.2549 |
0.366 |
|
| 1981 |
Benight AS, Wartell RM, Howell DK. Theory agrees with experimental thermal denaturation of short DNA restriction fragments. Nature. 289: 203-5. PMID 6256654 DOI: 10.1038/289203A0 |
0.68 |
|
| 1980 |
Wartell RM, Reznikoff WS. Cloning DNA restriction endonuclease fragments with protruding single-stranded ends. Gene. 9: 307-19. PMID 6248431 DOI: 10.1016/0378-1119(90)90329-P |
0.463 |
|
| 1980 |
Wartell RM, Benight AS. The helix-coil transition of dna restriction fragments containing the lactose operon promoter sequence Ferroelectrics. 30: 59-59. DOI: 10.1080/00150198008209487 |
0.66 |
|
| 1978 |
Martin JC, Wartell RM, O'Shea DC. Conformational features of distamycin-DNA and netropsin-DNA complexes by Raman spectroscopy. Proceedings of the National Academy of Sciences of the United States of America. 75: 5483-7. PMID 281697 DOI: 10.1073/Pnas.75.11.5483 |
0.415 |
|
| 1978 |
Broyde S, Wartell RM, Stellman SD, Hingerty B. Minimum energy conformations of DNA dimeric subunits: Potential energy calculations for dGpdC, dApdA, dCpdC, dGpdG, and dTpdT Biopolymers. 17: 1485-1506. DOI: 10.1002/Bip.1978.360170608 |
0.327 |
|
| 1977 |
Wartell RM. The transmission of stability or instability from site specific protein-DNA complexes. Nucleic Acids Research. 4: 2779-97. PMID 909792 DOI: 10.1093/Nar/4.8.2779 |
0.382 |
|
| 1977 |
Oliver AL, Wartell RM, Ratliff RL. Helix coil transitions of d(A)n-d(T)n, d(A-T)n-d(A-T)n, and d(A-A-T)n-d(A-T-T)n; evaluation of parameters governing DNA stability. Biopolymers. 16: 1115-37. PMID 861368 DOI: 10.1002/Bip.1977.360160512 |
0.312 |
|
| 1977 |
Wells RD, Blakesley RW, Hardies SC, Horn GT, Larson JE, Selsing E, Burd JF, Chan HW, Dodgson JB, Jensen KF, Nes IF, Wartell RM. The role of DNA structure in genetic regulation. Crc Critical Reviews in Biochemistry. 4: 305-40. PMID 319949 DOI: 10.3109/10409237709102561 |
0.347 |
|
| 1976 |
Wartell RM. Evidence for long-range interactions in DNA. Analysis of melting curves of block polymers d(C15A15)-d(T15G15),d(C20A15)-d(T15G20), and d(T15G20). Biopolymers. 15: 1461-79. PMID 963244 DOI: 10.1002/Bip.1976.360150803 |
0.378 |
|
| 1976 |
Stellman SD, Broyde SB, Wartell RM. Influence of ribose 2'-O-methylation on GpC conformation by classical potential energy calculations. Biopolymers. 15: 1951-64. PMID 963238 DOI: 10.1002/Bip.1976.360151007 |
0.332 |
|
| 1975 |
Broyde SB, Wartell RM, Stellman SD, Hingerty B, Langridge R. Classical potential energy calculations for ApA, CpC, GpG, and UpU. The influence of the bases on RNA subunit conformations. Biopolymers. 14: 1597-1613. PMID 1156657 DOI: 10.1002/Bip.1975.360140805 |
0.356 |
|
| 1975 |
Broyde SB, Stellman SD, Wartell RM. The A and B conformations of DNA and RNA subunits. Potential energy calculations for dGpdC Biopolymers. 14: 2625-2637. DOI: 10.1002/Bip.1975.360141217 |
0.429 |
|
| 1974 |
Wartell RM, Wells RD. Compatibility of simultaneous binding of actinomycin and netropsin to DNA Federation Proceedings. 33: No. 1461. |
0.325 |
|
| 1973 |
Wartell RM, Wells RD. Netropsin: a probe for conformational differences in DNA Federation Proceedings. 32: 2049. |
0.318 |
|
| Show low-probability matches. |
