Dariusz S. Przybylski, Ph.D. - Publications

Affiliations: 
2005 Columbia University, New York, NY 
Area:
General Biophysics

16 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2015 Jovanovic M, Rooney MS, Mertins P, Przybylski D, Chevrier N, Satija R, Rodriguez EH, Fields AP, Schwartz S, Raychowdhury R, Mumbach MR, Eisenhaure T, Rabani M, Gennert D, Lu D, et al. Immunogenetics. Dynamic profiling of the protein life cycle in response to pathogens. Science (New York, N.Y.). 347: 1259038. PMID 25745177 DOI: 10.1126/Science.1259038  0.314
2014 Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, ... ... Przybylski D, et al. The genomic substrate for adaptive radiation in African cichlid fish. Nature. 513: 375-81. PMID 25186727 DOI: 10.1038/Nature13726  0.337
2013 Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, Boisvert S, Chapman JA, Chapuis G, Chikhi R, Chitsaz H, Chou WC, Corbeil J, Del Fabbro C, Docking TR, ... ... Przybylski D, et al. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2: 10. PMID 23870653 DOI: 10.1186/2047-217X-2-10  0.42
2013 Amemiya CT, Alföldi J, Lee AP, Fan S, Philippe H, Maccallum I, Braasch I, Manousaki T, Schneider I, Rohner N, Organ C, Chalopin D, Smith JJ, Robinson M, Dorrington RA, ... ... Przybylski D, et al. The African coelacanth genome provides insights into tetrapod evolution. Nature. 496: 311-6. PMID 23598338 DOI: 10.1038/Nature12027  0.344
2012 Ribeiro FJ, Przybylski D, Yin S, Sharpe T, Gnerre S, Abouelleil A, Berlin AM, Montmayeur A, Shea TP, Walker BJ, Young SK, Russ C, Nusbaum C, MacCallum I, Jaffe DB. Finished bacterial genomes from shotgun sequence data. Genome Research. 22: 2270-7. PMID 22829535 DOI: 10.1101/Gr.141515.112  0.378
2011 Earl D, Bradnam K, St John J, Darling A, Lin D, Fass J, Yu HO, Buffalo V, Zerbino DR, Diekhans M, Nguyen N, Ariyaratne PN, Sung WK, Ning Z, Haimel M, ... ... Przybylski D, et al. Assemblathon 1: a competitive assessment of de novo short read assembly methods. Genome Research. 21: 2224-41. PMID 21926179 DOI: 10.1101/Gr.126599.111  0.402
2011 Gnerre S, Maccallum I, Przybylski D, Ribeiro FJ, Burton JN, Walker BJ, Sharpe T, Hall G, Shea TP, Sykes S, Berlin AM, Aird D, Costello M, Daza R, Williams L, et al. High-quality draft assemblies of mammalian genomes from massively parallel sequence data. Proceedings of the National Academy of Sciences of the United States of America. 108: 1513-8. PMID 21187386 DOI: 10.1073/Pnas.1017351108  0.424
2009 Maccallum I, Przybylski D, Gnerre S, Burton J, Shlyakhter I, Gnirke A, Malek J, McKernan K, Ranade S, Shea TP, Williams L, Young S, Nusbaum C, Jaffe DB. ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads. Genome Biology. 10: R103. PMID 19796385 DOI: 10.1186/Gb-2009-10-10-R103  0.385
2008 Przybylski D, Rost B. Powerful fusion: PSI-BLAST and consensus sequences. Bioinformatics (Oxford, England). 24: 1987-93. PMID 18678588 DOI: 10.1093/Bioinformatics/Btn384  0.557
2007 Przybylski D, Rost B. Consensus sequences improve PSI-BLAST through mimicking profile-profile alignments Nucleic Acids Research. 35: 2238-2246. PMID 17369271 DOI: 10.1093/Nar/Gkm107  0.582
2004 Przybylski D, Rost B. Improving fold recognition without folds. Journal of Molecular Biology. 341: 255-69. PMID 15312777 DOI: 10.1016/J.Jmb.2004.05.041  0.617
2004 Bigelow HR, Petrey DS, Liu J, Przybylski D, Rost B. Predicting transmembrane beta-barrels in proteomes. Nucleic Acids Research. 32: 2566-77. PMID 15141026 DOI: 10.1093/Nar/Gkh580  0.571
2003 Eyrich VA, Przybylski D, Koh IY, Grana O, Pazos F, Valencia A, Rost B. CAFASP3 in the spotlight of EVA. Proteins. 53: 548-60. PMID 14579345 DOI: 10.1002/Prot.10534  0.567
2003 Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Graña O, Pazos F, Valencia A, Sali A, Rost B. EVA: Evaluation of protein structure prediction servers. Nucleic Acids Research. 31: 3311-5. PMID 12824315 DOI: 10.1093/Nar/Gkg619  0.586
2002 Przybylski D, Rost B. Alignments grow, secondary structure prediction improves. Proteins. 46: 197-205. PMID 11807948 DOI: 10.1002/Prot.10029  0.584
2001 Eyrich VA, Martí-Renom MA, Przybylski D, Madhusudhan MS, Fiser A, Pazos F, Valencia A, Sali A, Rost B. EVA: continuous automatic evaluation of protein structure prediction servers. Bioinformatics (Oxford, England). 17: 1242-3. PMID 11751240 DOI: 10.1093/Bioinformatics/17.12.1242  0.59
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