| Year |
Citation |
Score |
| 2023 |
Liu B, Yang D, Wang D, Liang C, Wang J, Lisch D, Zhao M. Heritable changes of epialleles near genes in maize can be triggered in the absence of CHH methylation. Plant Physiology. PMID 38109503 DOI: 10.1093/plphys/kiad668 |
0.384 |
|
| 2023 |
Liu B, Yang D, Wang D, Liang C, Wang J, Lisch D, Zhao M. The initiation and maintenance of CHH methylation and its effects on gene expression are unique in maize. Biorxiv : the Preprint Server For Biology. PMID 37131670 DOI: 10.1101/2023.04.15.537008 |
0.372 |
|
| 2022 |
Li T, Yin L, Stoll CE, Lisch D, Zhao M. Conserved non-coding sequences and de novo Mutator insertion alleles are imprinted in maize. Plant Physiology. PMID 36173333 DOI: 10.1093/plphys/kiac459 |
0.469 |
|
| 2022 |
Guo W, Cannon A, Lisch D. A Molecular Cloning and Sanger Sequencing-based Protocol for Detecting Site-specific DNA Methylation. Bio-Protocol. 12: e4408. PMID 35800457 DOI: 10.21769/BioProtoc.4408 |
0.343 |
|
| 2022 |
Lee S, Fu F, Liao CJ, Mewa DB, Adeyanju A, Ejeta G, Lisch D, Mengiste T. Broad spectrum fungal resistance in sorghum is conferred through the complex regulation of an immune receptor gene embedded in a natural antisense transcript. The Plant Cell. PMID 35018449 DOI: 10.1093/plcell/koab305 |
0.306 |
|
| 2021 |
Guo W, Wang D, Lisch D. RNA-directed DNA methylation prevents rapid and heritable reversal of transposon silencing under heat stress in Zea mays. Plos Genetics. 17: e1009326. PMID 34125827 DOI: 10.1371/journal.pgen.1009326 |
0.312 |
|
| 2021 |
Zhao M, Ku JC, Liu B, Yang D, Yin L, Ferrell TJ, Stoll CE, Guo W, Zhang X, Wang D, Wang CR, Lisch D. The mutation affects the recombination landscape in maize. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33558228 DOI: 10.1073/pnas.2009475118 |
0.626 |
|
| 2020 |
Zhang X, Zhao M, McCarty DR, Lisch D. Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes. Nucleic Acids Research. PMID 32442316 DOI: 10.1093/Nar/Gkaa370 |
0.667 |
|
| 2020 |
Wang D, Zhang J, Zuo T, Lisch D, Zhao M, Peterson T. Small RNA-Mediated Silencing of Transposons Is Initiated by Alternative Transposition in Maize. Genetics. PMID 32317287 DOI: 10.1534/Genetics.120.303264 |
0.496 |
|
| 2020 |
Burgess D, Li H, Zhao M, Kim SY, Lisch D. Silencing of Elements in Maize Involves Distinct Populations of Small RNAs and Distinct Patterns of DNA Methylation. Genetics. PMID 32229532 DOI: 10.1534/Genetics.120.303033 |
0.454 |
|
| 2020 |
Zhang X, Zhao M, Lisch D. Cost-Effective Profiling of Mutator Transposon Insertions in Maize by Next-Generation Sequencing. Methods in Molecular Biology (Clifton, N.J.). 2072: 39-50. PMID 31541437 DOI: 10.1007/978-1-4939-9865-4_5 |
0.609 |
|
| 2018 |
Zhao M, Zhang B, Ma J, Lisch D. Genome-wide Estimation of Evolutionary Distance and Phylogenetic Analysis of Homologous Genes. Bio-Protocol. 8: e3097. PMID 34532544 DOI: 10.21769/BioProtoc.3097 |
0.422 |
|
| 2018 |
Lisch D, Burns KH. Editorial overview: Genome architecture and expression: Mobile elements at work. Current Opinion in Genetics & Development. 49: iv-v. PMID 29807645 DOI: 10.1016/J.Gde.2018.05.003 |
0.407 |
|
| 2018 |
Wendel JF, Lisch D, Hu G, Mason AS. The long and short of doubling down: polyploidy, epigenetics, and the temporal dynamics of genome fractionation. Current Opinion in Genetics & Development. 49: 1-7. PMID 29438956 DOI: 10.1016/J.Gde.2018.01.004 |
0.572 |
|
| 2018 |
Zhao M, Zhang B, Ma J, Lisch D. Genome-wide Estimation of Evolutionary Distance and Phylogenetic Analysis of Homologous Genes Bio-Protocol. 8. DOI: 10.21769/bioprotoc.3097 |
0.383 |
|
| 2017 |
Zhao M, Zhang B, Lisch D, Ma J. Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants. The Plant Cell. 29: 2974-2994. PMID 29180596 DOI: 10.1105/Tpc.17.00595 |
0.566 |
|
| 2017 |
Xu J, Wang Q, Freeling M, Zhang X, Xu Y, Mao Y, Tang X, Wu F, Lan H, Cao M, Rong T, Lisch D, Lu Y. Natural antisense transcripts are significantly involved in regulation of drought stress in maize. Nucleic Acids Research. PMID 28175341 DOI: 10.1093/Nar/Gkx085 |
0.681 |
|
| 2016 |
Springer NM, Li Q, Lisch D. Creating order from chaos: epigenome dynamics in plants with complex genomes. The Plant Cell. PMID 26869701 DOI: 10.1105/Tpc.15.00911 |
0.545 |
|
| 2016 |
Lisch D. Mutator and MULE Transposons. Microbiology Spectrum. 3: MDNA3-0032-2014. PMID 26104710 DOI: 10.1128/Microbiolspec.Mdna3-0032-2014 |
0.457 |
|
| 2015 |
Li Q, Gent JI, Zynda G, Song J, Makarevitch I, Hirsch CD, Hirsch CN, Dawe RK, Madzima TF, McGinnis KM, Lisch D, Schmitz RJ, Vaughn MW, Springer NM. RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome. Proceedings of the National Academy of Sciences of the United States of America. PMID 26553984 DOI: 10.1073/Pnas.1514680112 |
0.541 |
|
| 2015 |
Freeling M, Xu J, Woodhouse M, Lisch D. A Solution to the C-Value Paradox and the Function of Junk DNA: The Genome Balance Hypothesis. Molecular Plant. 8: 899-910. PMID 25743198 DOI: 10.1016/J.Molp.2015.02.009 |
0.8 |
|
| 2014 |
Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X. Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids. Proceedings of the National Academy of Sciences of the United States of America. 111: 5283-8. PMID 24706847 DOI: 10.1073/Pnas.1402475111 |
0.729 |
|
| 2014 |
Lisch D. Regulation of the Mutator system of transposons in maize. Methods in Molecular Biology (Clifton, N.J.). 1057: 123-42. PMID 23918425 DOI: 10.1007/978-1-62703-568-2_9 |
0.476 |
|
| 2014 |
Lisch D. Transposable elements in plants Access Science. DOI: 10.1036/1097-8542.Yb140306 |
0.508 |
|
| 2013 |
Lisch D. What is being written, and why?: comment on "How life changes itself: the Read-Write (RW) genome" by James Shapiro. Physics of Life Reviews. 10: 336-7. PMID 23891466 DOI: 10.1016/J.Plrev.2013.07.012 |
0.348 |
|
| 2013 |
Lisch D. How important are transposons for plant evolution? Nature Reviews. Genetics. 14: 49-61. PMID 23247435 DOI: 10.1038/Nrg3374 |
0.422 |
|
| 2012 |
Lisch D. Regulation of transposable elements in maize. Current Opinion in Plant Biology. 15: 511-6. PMID 22824142 DOI: 10.1016/J.Pbi.2012.07.001 |
0.425 |
|
| 2012 |
Freeling M, Woodhouse MR, Subramaniam S, Turco G, Lisch D, Schnable JC. Fractionation mutagenesis and similar consequences of mechanisms removing dispensable or less-expressed DNA in plants. Current Opinion in Plant Biology. 15: 131-9. PMID 22341793 DOI: 10.1016/J.Pbi.2012.01.015 |
0.813 |
|
| 2011 |
Cannon EK, Birkett SM, Braun BL, Kodavali S, Jennewein DM, Yilmaz A, Antonescu V, Antonescu C, Harper LC, Gardiner JM, Schaeffer ML, Campbell DA, Andorf CM, Andorf D, Lisch D, et al. POPcorn: An Online Resource Providing Access to Distributed and Diverse Maize Project Data. International Journal of Plant Genomics. 2011: 923035. PMID 22253616 DOI: 10.1155/2011/923035 |
0.337 |
|
| 2011 |
Lisch D, Slotkin RK. Strategies for silencing and escape: the ancient struggle between transposable elements and their hosts. International Review of Cell and Molecular Biology. 292: 119-52. PMID 22078960 DOI: 10.1016/B978-0-12-386033-0.00003-7 |
0.702 |
|
| 2011 |
Lisch D, Bennetzen JL. Transposable element origins of epigenetic gene regulation. Current Opinion in Plant Biology. 14: 156-61. PMID 21444239 DOI: 10.1016/J.Pbi.2011.01.003 |
0.688 |
|
| 2011 |
Jiang N, Ferguson AA, Slotkin RK, Lisch D. Pack-Mutator-like transposable elements (Pack-MULEs) induce directional modification of genes through biased insertion and DNA acquisition. Proceedings of the National Academy of Sciences of the United States of America. 108: 1537-42. PMID 21220310 DOI: 10.1073/Pnas.1010814108 |
0.749 |
|
| 2010 |
Li H, Freeling M, Lisch D. Epigenetic reprogramming during vegetative phase change in maize. Proceedings of the National Academy of Sciences of the United States of America. 107: 22184-9. PMID 21135217 DOI: 10.1073/Pnas.1016884108 |
0.585 |
|
| 2010 |
Woodhouse MR, Schnable JC, Pedersen BS, Lyons E, Lisch D, Subramaniam S, Freeling M. Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. Plos Biology. 8: e1000409. PMID 20613864 DOI: 10.1371/Journal.Pbio.1000409 |
0.791 |
|
| 2009 |
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Lisch DR, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534 |
0.8 |
|
| 2009 |
Jia Y, Lisch DR, Ohtsu K, Scanlon MJ, Nettleton D, Schnable PS. Loss of RNA-dependent RNA polymerase 2 (RDR2) function causes widespread and unexpected changes in the expression of transposons, genes, and 24-nt small RNAs. Plos Genetics. 5: e1000737. PMID 19936292 DOI: 10.1371/Journal.Pgen.1000737 |
0.671 |
|
| 2009 |
Ramirez J, Bolduc N, Lisch D, Hake S. Distal expression of knotted1 in maize leaves leads to reestablishment of proximal/distal patterning and leaf dissection. Plant Physiology. 151: 1878-88. PMID 19854860 DOI: 10.1104/Pp.109.145920 |
0.643 |
|
| 2009 |
Hale CJ, Erhard KF, Lisch D, Hollick JB. Production and processing of siRNA precursor transcripts from the highly repetitive maize genome. Plos Genetics. 5: e1000598. PMID 19680464 DOI: 10.1371/Journal.Pgen.1000598 |
0.451 |
|
| 2009 |
Hanada K, Vallejo V, Nobuta K, Slotkin RK, Lisch D, Meyers BC, Shiu SH, Jiang N. The functional role of pack-MULEs in rice inferred from purifying selection and expression profile. The Plant Cell. 21: 25-38. PMID 19136648 DOI: 10.1105/Tpc.108.063206 |
0.73 |
|
| 2009 |
Lisch D. Epigenetic regulation of transposable elements in plants. Annual Review of Plant Biology. 60: 43-66. PMID 19007329 DOI: 10.1146/Annurev.Arplant.59.032607.092744 |
0.495 |
|
| 2009 |
Singh J, Freeling M, Lisch D. Correction: A Position Effect on the Heritability of Epigenetic Silencing Plos Genetics. 5. DOI: 10.1371/Annotation/Dd58C52F-161D-4A3F-B560-C9Fd78307F85 |
0.559 |
|
| 2008 |
Lisch D. A new SPIN on horizontal transfer. Proceedings of the National Academy of Sciences of the United States of America. 105: 16827-8. PMID 18974220 DOI: 10.1073/Pnas.0809525105 |
0.318 |
|
| 2008 |
Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M. Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids. Plant Physiology. 148: 1772-81. PMID 18952863 DOI: 10.1104/Pp.108.124867 |
0.77 |
|
| 2008 |
Singh J, Freeling M, Lisch D. A position effect on the heritability of epigenetic silencing. Plos Genetics. 4: e1000216. PMID 18846225 DOI: 10.1371/Journal.Pgen.1000216 |
0.696 |
|
| 2008 |
Freeling M, Lyons E, Pedersen B, Alam M, Ming R, Lisch D. Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Research. 18: 1924-37. PMID 18836034 DOI: 10.1101/Gr.081026.108 |
0.767 |
|
| 2006 |
Woodhouse MR, Freeling M, Lisch D. Initiation, establishment, and maintenance of heritable MuDR transposon silencing in maize are mediated by distinct factors. Plos Biology. 4: e339. PMID 16968137 DOI: 10.1371/Journal.Pbio.0040339 |
0.682 |
|
| 2006 |
Diao XM, Lisch D. Mutator transposon in maize and MULEs in the plant genome Acta Genetica Sinica. 33: 477-487. PMID 16800377 DOI: 10.1016/S0379-4172(06)60075-9 |
0.549 |
|
| 2006 |
Diao X, Freeling M, Lisch D. Horizontal transfer of a plant transposon. Plos Biology. 4: e5. PMID 16336045 DOI: 10.1371/Journal.Pbio.0040005 |
0.653 |
|
| 2006 |
Woodhouse MR, Freeling M, Lisch D. The mop1 (mediator of paramutation1) mutant progressively reactivates one of the two genes encoded by the MuDR transposon in maize. Genetics. 172: 579-92. PMID 16219782 DOI: 10.1534/Genetics.105.051383 |
0.684 |
|
| 2005 |
Slotkin RK, Freeling M, Lisch D. Heritable transposon silencing initiated by a naturally occurring transposon inverted duplication. Nature Genetics. 37: 641-4. PMID 15908951 DOI: 10.1038/Ng1576 |
0.798 |
|
| 2005 |
Lisch D. Pack-MULEs: theft on a massive scale. Bioessays : News and Reviews in Molecular, Cellular and Developmental Biology. 27: 353-5. PMID 15770680 DOI: 10.1002/Bies.20219 |
0.479 |
|
| 2003 |
Slotkin RK, Freeling M, Lisch D. Mu killer causes the heritable inactivation of the Mutator family of transposable elements in Zea mays. Genetics. 165: 781-97. PMID 14573488 |
0.755 |
|
| 2003 |
Hudson ME, Lisch DR, Quail PH. The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway. The Plant Journal : For Cell and Molecular Biology. 34: 453-71. PMID 12753585 DOI: 10.1046/J.1365-313X.2003.01741.X |
0.453 |
|
| 2003 |
Lisch D. Mutator transposons. Trends in Plant Science. 7: 498-504. PMID 12417150 DOI: 10.1016/s1360-1385(02)02347-6 |
0.42 |
|
| 2002 |
Lisch D, Carey CC, Dorweiler JE, Chandler VL. A mutation that prevents paramutation in maize also reverses Mutator transposon methylation and silencing. Proceedings of the National Academy of Sciences of the United States of America. 99: 6130-5. PMID 11959901 DOI: 10.1073/Pnas.052152199 |
0.484 |
|
| 2002 |
Kaplinsky N, Braun D, Lisch D, Hay A, Hake S, Freeling M. Biodiversity (Communications arising): maize transgene results in Mexico are artefacts. Nature. 416: 601-2; discussion 60. PMID 11935145 DOI: 10.1038/Nature739 |
0.727 |
|
| 2001 |
Kidwell MG, Lisch DR. Perspective: transposable elements, parasitic DNA, and genome evolution. Evolution; International Journal of Organic Evolution. 55: 1-24. PMID 11263730 DOI: 10.1111/J.0014-3820.2001.Tb01268.X |
0.396 |
|
| 2001 |
Lisch DR, Freeling M, Langham RJ, Choy MY. Mutator transposase is widespread in the grasses. Plant Physiology. 125: 1293-303. PMID 11244110 DOI: 10.1104/Pp.125.3.1293 |
0.683 |
|
| 2001 |
Kidwell MG, Lisch DR. PERSPECTIVE: TRANSPOSABLE ELEMENTS, PARASITIC DNA, AND GENOME EVOLUTION Evolution. 55: 1. DOI: 10.1554/0014-3820(2001)055[0001:PTEPDA]2.0.CO;2 |
0.308 |
|
| 2000 |
Kidwell MG, Lisch DR. Transposable elements and host genome evolution. Trends in Ecology & Evolution. 15: 95-99. PMID 10675923 DOI: 10.1016/S0169-5347(99)01817-0 |
0.424 |
|
| 1999 |
Lisch D, Girard L, Donlin M, Freeling M. Functional analysis of deletion derivatives of the maize transposon MuDR delineates roles for the MURA and MURB proteins. Genetics. 151: 331-41. PMID 9872971 |
0.63 |
|
| 1998 |
Kidwell MG, Lisch DR. Hybrid genetics. Transposons unbound. Nature. 393: 22-3. PMID 9590685 DOI: 10.1038/29889 |
0.426 |
|
| 1997 |
Kidwell MG, Lisch D. Transposable elements as sources of variation in animals and plants. Proceedings of the National Academy of Sciences of the United States of America. 94: 7704-11. PMID 9223252 DOI: 10.1073/Pnas.94.15.7704 |
0.391 |
|
| 1995 |
Donlin MJ, Lisch D, Freeling M. Tissue-specific accumulation of MURB, a protein encoded by MuDR, the autonomous regulator of the Mutator transposable element family. The Plant Cell. 7: 1989-2000. PMID 8718617 DOI: 10.1105/Tpc.7.12.1989 |
0.582 |
|
| 1995 |
Lisch D, Chomet P, Freeling M. Genetic characterization of the Mutator system in maize: behavior and regulation of Mu transposons in a minimal line. Genetics. 139: 1777-96. PMID 7789777 |
0.548 |
|
| 1991 |
Chomet P, Lisch D, Hardeman KJ, Chandler VL, Freeling M. Identification of a regulatory transposon that controls the Mutator transposable element system in maize. Genetics. 129: 261-70. PMID 1657702 |
0.582 |
|
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