| Year |
Citation |
Score |
| 2023 |
Hernández Sánchez LF, Burger B, Castro Campos RA, Johansson S, Njølstad PR, Barsnes H, Vaudel M. Extending protein interaction networks using proteoforms and small molecules. Bioinformatics (Oxford, England). 39. PMID 37756698 DOI: 10.1093/bioinformatics/btad598 |
0.717 |
|
| 2022 |
Burger B, Vaudel M, Barsnes H. Automated splitting into batches for observational biomedical studies with sequential processing. Biostatistics (Oxford, England). PMID 35536588 DOI: 10.1093/biostatistics/kxac014 |
0.72 |
|
| 2021 |
Farag YM, Horro C, Vaudel M, Barsnes H. PeptideShaker Online: A User-Friendly Web-Based Framework for the Identification of Mass Spectrometry-Based Proteomics Data. Journal of Proteome Research. 20: 5419-5423. PMID 34709836 DOI: 10.1021/acs.jproteome.1c00678 |
0.82 |
|
| 2020 |
Gupta MK, Vethe H, Softic S, Rao TN, Wagh V, Shirakawa J, Barsnes H, Vaudel M, Takatani T, Kahraman S, Sakaguchi M, Martinez R, Hu J, Bjørlykke Y, Raeder H, et al. Leptin Receptor Signaling Regulates Protein Synthesis Pathways and Neuronal Differentiation in Pluripotent Stem Cells. Stem Cell Reports. PMID 33125875 DOI: 10.1016/j.stemcr.2020.10.001 |
0.568 |
|
| 2020 |
Burger B, Vaudel M, Barsnes H. On the importance of block randomisation when designing proteomics experiments. Journal of Proteome Research. PMID 32969222 DOI: 10.1021/acs.jproteome.0c00536 |
0.706 |
|
| 2020 |
Guldbrandsen A, Lereim RR, Jacobsen M, Garberg H, Kroksveen AC, Barsnes H, Berven FS. Development of robust targeted proteomics assays for cerebrospinal fluid biomarkers in multiple sclerosis. Clinical Proteomics. 17: 33. PMID 32963504 DOI: 10.1186/S12014-020-09296-5 |
0.397 |
|
| 2020 |
Van Den Bossche T, Verschaffelt P, Schallert K, Barsnes H, Dawyndt P, Benndorf D, Renard BY, Mesuere B, Martens L, Muth T. Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis. Journal of Proteome Research. PMID 32431147 DOI: 10.1021/Acs.Jproteome.0C00136 |
0.801 |
|
| 2019 |
Loo LSW, Vethe H, Soetedjo AAP, Paulo JA, Jasmen J, Jackson N, Bjørlykke Y, Valdez IA, Vaudel M, Barsnes H, Gygi SP, Raeder H, Teo AKK, Kulkarni RN. Dynamic proteome profiling of human pluripotent stem cell-derived pancreatic progenitors. Stem Cells (Dayton, Ohio). PMID 31828876 DOI: 10.1002/Stem.3135 |
0.623 |
|
| 2019 |
Hulstaert N, Shofstahl J, Sachsenberg T, Walzer M, Barsnes H, Martens L, Perez-Riverol Y. ThermoRawFileParser: Modular, Scalable, and Cross-Platform RAW File Conversion. Journal of Proteome Research. PMID 31755270 DOI: 10.1021/Acs.Jproteome.9B00328 |
0.626 |
|
| 2019 |
Guldbrandsen A, Farag YM, Lereim RR, Berven FS, Barsnes H. Essential Features and Use Cases of the Cerebrospinal Fluid Proteome Resource (CSF-PR). Methods in Molecular Biology (Clifton, N.J.). 2044: 377-391. PMID 31432427 DOI: 10.1007/978-1-4939-9706-0_25 |
0.806 |
|
| 2019 |
Sánchez LFH, Burger B, Horro C, Fabregat A, Johansson S, Njølstad PR, Barsnes H, Hermjakob H, Vaudel M. PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping. Gigascience. 8. PMID 31363752 DOI: 10.1093/Gigascience/Giz088 |
0.739 |
|
| 2019 |
Burger B, Lereim RR, Berven FS, Barsnes H. Detecting single amino acids and small peptides by combining isobaric tags and peptidomics. European Journal of Mass Spectrometry (Chichester, England). 1469066719857006. PMID 31189351 DOI: 10.1177/1469066719857006 |
0.634 |
|
| 2019 |
Binz PA, Shofstahl J, Vizcaíno JA, Barsnes H, Chalkley RJ, Menschaert G, Alpi E, Clauser K, Eng JK, Lane L, Seymour SL, Sánchez LFH, Mayer G, Eisenacher M, Perez-Riverol Y, et al. Proteomics Standards Initiative Extended FASTA Format (PEFF). Journal of Proteome Research. PMID 31081335 DOI: 10.1021/Acs.Jproteome.9B00064 |
0.791 |
|
| 2018 |
Burger B, Hernández Sánchez LF, Lereim RR, Barsnes H, Vaudel M. Analysing the structure of pathways and its influence on the interpretation of biomedical proteomics datasets. Journal of Proteome Research. PMID 30251541 DOI: 10.1021/Acs.Jproteome.8B00464 |
0.756 |
|
| 2018 |
Barsnes H, Vaudel M. SearchGUI: a highly adaptable common interface for proteomics search and de novo engines. Journal of Proteome Research. PMID 29774740 DOI: 10.1021/Acs.Jproteome.8B00175 |
0.721 |
|
| 2017 |
Chambers MC, Jagtap PD, Johnson JE, McGowan T, Kumar P, Onsongo G, Guerrero CR, Barsnes H, Vaudel M, Martens L, Grüning B, Cooke IR, Heydarian M, Reddy KL, Griffin TJ. An Accessible Proteogenomics Informatics Resource for Cancer Researchers. Cancer Research. 77: e43-e46. PMID 29092937 DOI: 10.1158/0008-5472.Can-17-0331 |
0.755 |
|
| 2017 |
Verheggen K, Raeder H, Berven FS, Martens L, Barsnes H, Vaudel M. Anatomy and evolution of database search engines-a central component of mass spectrometry based proteomic workflows. Mass Spectrometry Reviews. PMID 28902424 DOI: 10.1002/Mas.21543 |
0.809 |
|
| 2017 |
Perez-Riverol Y, Ternent T, Koch M, Barsnes H, Vrousgou O, Jupp S, Vizcaíno JA. OLS Client and OLS Dialog: Open source tools to annotate public omics datasets. Proteomics. PMID 28792687 DOI: 10.1002/Pmic.201700244 |
0.442 |
|
| 2017 |
Vizcaíno JA, Mayer G, Perkins SR, Barsnes H, Vaudel M, Perez-Riverol Y, Ternent T, Uszkoreit J, Eisenacher M, Fischer L, Rappsilber J, Netz E, Walzer M, Kohlbacher O, Leitner A, et al. The mzIdentML data standard version 1.2, supporting advances in proteome informatics. Molecular & Cellular Proteomics : McP. PMID 28515314 DOI: 10.1074/Mcp.M117.068429 |
0.693 |
|
| 2017 |
Leprevost FD, Grüning BA, Alves Aflitos S, Röst HL, Uszkoreit J, Barsnes H, Vaudel M, Moreno P, Gatto L, Weber J, Bai M, Jimenez RC, Sachsenberg T, Pfeuffer J, Vera Alvarez R, et al. BioContainers: An open-source and community-driven framework for software standardization. Bioinformatics (Oxford, England). PMID 28379341 DOI: 10.1093/Bioinformatics/Btx192 |
0.658 |
|
| 2017 |
Kopczynski D, Barsnes H, Njølstad PR, Sickmann A, Vaudel M, Ahrends R. PeptideMapper: Efficient and Versatile Amino Acid Sequence and Tag Mapping. Bioinformatics (Oxford, England). PMID 28334306 DOI: 10.1093/Bioinformatics/Btx122 |
0.649 |
|
| 2017 |
Kroksveen AC, Guldbrandsen A, Vaudel M, Lereim RR, Barsnes H, Myhr KM, Torkildsen Ø, Berven FS. In-Depth Cerebrospinal Fluid Quantitative Proteome and Deglycoproteome Analysis: Presenting a Comprehensive Picture of Pathways and Processes Affected by Multiple Sclerosis. Journal of Proteome Research. 16: 179-194. PMID 27728768 DOI: 10.1021/Acs.Jproteome.6B00659 |
0.668 |
|
| 2016 |
Lereim RR, Oveland E, Berven FS, Vaudel M, Barsnes H. Visualization, Inspection and Interpretation of Shotgun Proteomics Identification Results. Advances in Experimental Medicine and Biology. 919: 227-235. PMID 27975220 DOI: 10.1007/978-3-319-41448-5_11 |
0.722 |
|
| 2016 |
Muth T, Rapp E, Berven FS, Barsnes H, Vaudel M. Tandem Mass Spectrum Sequencing: An Alternative to Database Search Engines in Shotgun Proteomics. Advances in Experimental Medicine and Biology. 919: 217-226. PMID 27975219 DOI: 10.1007/978-3-319-41448-5_10 |
0.816 |
|
| 2016 |
Verheggen K, Martens L, Berven FS, Barsnes H, Vaudel M. Database Search Engines: Paradigms, Challenges and Solutions. Advances in Experimental Medicine and Biology. 919: 147-156. PMID 27975215 DOI: 10.1007/978-3-319-41448-5_6 |
0.811 |
|
| 2016 |
Guldbrandsen A, Farag Y, Kroksveen AC, Oveland E, Lereim RR, Opsahl JA, Myhr KM, Berven FS, Barsnes H. CSF-PR 2.0: an interactive literature guide to quantitative cerebrospinal fluid mass spectrometry data from neurodegenerative disorders. Molecular & Cellular Proteomics : McP. PMID 27890865 DOI: 10.1074/Mcp.O116.064477 |
0.809 |
|
| 2016 |
Vaudel M, Barsnes H, Ræder H, Berven FS. Using Proteomics Bioinformatics Tools and Resources in Proteogenomic Studies. Advances in Experimental Medicine and Biology. 926: 65-75. PMID 27686806 DOI: 10.1007/978-3-319-42316-6_5 |
0.673 |
|
| 2016 |
Yılmaz Ş, Victor B, Hulstaert N, Vandermarliere E, Barsnes H, Degroeve S, Gupta S, Sticker A, Gabriël S, Dorny P, Palmblad M, Martens L. A pipeline for differential proteomics in unsequenced species. Journal of Proteome Research. PMID 27089233 DOI: 10.1021/Acs.Jproteome.6B00140 |
0.76 |
|
| 2016 |
Opsahl JA, Vaudel M, Guldbrandsen A, Aasebø E, Van Pesch V, Franciotta D, Myhr KM, Barsnes H, Berle M, Torkildsen Ø, Kroksveen AC, Berven FS. Label-free analysis of human cerebrospinal fluid addressing various normalization strategies and revealing protein groups affected by multiple sclerosis. Proteomics. 16: 1154-65. PMID 26841090 DOI: 10.1002/Pmic.201500284 |
0.661 |
|
| 2016 |
Hernández Sánchez LF, Aasebø E, Selheim F, Berven FS, Ræder H, Barsnes H, Vaudel M. Systemic Analysis of Regulated Functional Networks. Methods in Molecular Biology (Clifton, N.J.). 1394: 287-310. PMID 26700057 DOI: 10.1007/978-1-4939-3341-9_21 |
0.635 |
|
| 2016 |
Guldbrandsen A, Barsnes H, Kroksveen AC, Berven FS, Vaudel M. A Simple Workflow for Large Scale Shotgun Glycoproteomics. Methods in Molecular Biology (Clifton, N.J.). 1394: 275-286. PMID 26700056 DOI: 10.1007/978-1-4939-3341-9_20 |
0.702 |
|
| 2016 |
Aasebø E, Berven FS, Selheim F, Barsnes H, Vaudel M. Interpretation of Quantitative Shotgun Proteomic Data. Methods in Molecular Biology (Clifton, N.J.). 1394: 261-273. PMID 26700055 DOI: 10.1007/978-1-4939-3341-9_19 |
0.707 |
|
| 2016 |
Verheggen K, Maddelein D, Hulstaert N, Martens L, Barsnes H, Vaudel M. Pladipus Enables Universal Distributed Computing in Proteomics Bioinformatics. Journal of Proteome Research. 15: 707-12. PMID 26510693 DOI: 10.1021/Acs.Jproteome.5B00850 |
0.775 |
|
| 2016 |
Vaudel M, Verheggen K, Csordas A, Raeder H, Berven FS, Martens L, Vizcaíno JA, Barsnes H. Exploring the potential of public proteomics data. Proteomics. 16: 214-25. PMID 26449181 DOI: 10.1002/Pmic.201500295 |
0.814 |
|
| 2016 |
Vaudel M, Barsnes H, Bjerkvig R, Bikfalvi A, Selheim F, Berven FS, Daubon T. Practical Considerations for Omics Experiments in Biomedical Sciences. Current Pharmaceutical Biotechnology. 17: 105-14. PMID 26278526 DOI: 10.2174/1389201016666150817095348 |
0.658 |
|
| 2015 |
Kroksveen AC, Jaffe JD, Aasebø E, Barsnes H, Bjørlykke Y, Franciotta D, Keshishian H, Myhr KM, Opsahl JA, van Pesch V, Teunissen CE, Torkildsen Ø, Ulvik RJ, Vethe H, Carr SA, et al. Quantitative proteomics suggests decrease in the secretogranin-1 cerebrospinal fluid levels during the disease course of multiple sclerosis. Proteomics. 15: 3361-9. PMID 26152395 DOI: 10.1002/Pmic.201400142 |
0.365 |
|
| 2015 |
Farag Y, Berven FS, Jonassen I, Petersen K, Barsnes H. Distributed and interactive visual analysis of omics data. Journal of Proteomics. 129: 78-82. PMID 26047716 DOI: 10.1016/J.Jprot.2015.05.029 |
0.814 |
|
| 2015 |
Vizcaíno JA, Barsnes H, Hermjakob H. Proteomics data visualisation. Proteomics. 15: 1339-40. PMID 25854789 DOI: 10.1002/Pmic.201570063 |
0.43 |
|
| 2015 |
Vaudel M, Burkhart JM, Zahedi RP, Oveland E, Berven FS, Sickmann A, Martens L, Barsnes H. PeptideShaker enables reanalysis of MS-derived proteomics data sets. Nature Biotechnology. 33: 22-4. PMID 25574629 DOI: 10.1038/Nbt.3109 |
0.74 |
|
| 2015 |
Oveland E, Muth T, Rapp E, Martens L, Berven FS, Barsnes H. Viewing the proteome: how to visualize proteomics data? Proteomics. 15: 1341-55. PMID 25504833 DOI: 10.1002/Pmic.201400412 |
0.779 |
|
| 2015 |
Barsnes H, Vaudel M, Martens L. JSparklines: making tabular proteomics data come alive. Proteomics. 15: 1428-31. PMID 25422159 DOI: 10.1002/Pmic.201400356 |
0.742 |
|
| 2015 |
Bjorlykke Y, Vethe H, Vaudel M, Barsnes H, Berven FS, Tjora E, Raeder H. Carboxyl-ester lipase maturity-onset diabetes of the young disease protein biomarkers in secretin-stimulated duodenal juice. Journal of Proteome Research. 14: 521-30. PMID 25369532 DOI: 10.1021/Pr500750Z |
0.624 |
|
| 2014 |
Guldbrandsen A, Vethe H, Farag Y, Oveland E, Garberg H, Berle M, Myhr KM, Opsahl JA, Barsnes H, Berven FS. In-depth characterization of the cerebrospinal fluid (CSF) proteome displayed through the CSF proteome resource (CSF-PR). Molecular & Cellular Proteomics : McP. 13: 3152-63. PMID 25038066 DOI: 10.1074/Mcp.M114.038554 |
0.8 |
|
| 2014 |
Vaudel M, Barsnes H, Martens L, Berven FS. Bioinformatics for proteomics: opportunities at the interface between the scientists, their experiments, and the community. Methods in Molecular Biology (Clifton, N.J.). 1156: 239-48. PMID 24791993 DOI: 10.1007/978-1-4939-0685-7_16 |
0.718 |
|
| 2014 |
Vaudel M, Venne AS, Berven FS, Zahedi RP, Martens L, Barsnes H. Shedding light on black boxes in protein identification. Proteomics. 14: 1001-5. PMID 24678044 DOI: 10.1002/Pmic.201300488 |
0.777 |
|
| 2014 |
Kelchtermans P, Bittremieux W, De Grave K, Degroeve S, Ramon J, Laukens K, Valkenborg D, Barsnes H, Martens L. Machine learning applications in proteomics research: how the past can boost the future. Proteomics. 14: 353-66. PMID 24323524 DOI: 10.1002/Pmic.201300289 |
0.765 |
|
| 2014 |
Muth T, Weilnböck L, Rapp E, Huber CG, Martens L, Vaudel M, Barsnes H. DeNovoGUI: an open source graphical user interface for de novo sequencing of tandem mass spectra. Journal of Proteome Research. 13: 1143-6. PMID 24295440 DOI: 10.1021/Pr4008078 |
0.811 |
|
| 2014 |
Verheggen K, Barsnes H, Martens L. Distributed computing and data storage in proteomics: many hands make light work, and a stronger memory. Proteomics. 14: 367-77. PMID 24285552 DOI: 10.1002/Pmic.201300288 |
0.788 |
|
| 2013 |
Hulstaert N, Reisinger F, Rameseder J, Barsnes H, Vizcaíno JA, Martens L. Pride-asap: automatic fragment ion annotation of identified PRIDE spectra. Journal of Proteomics. 95: 89-92. PMID 23603108 DOI: 10.1016/J.Jprot.2013.04.011 |
0.595 |
|
| 2013 |
Barsnes H, Martens L. Crowdsourcing in proteomics: Public resources lead to better experiments Amino Acids. 44: 1129-1137. PMID 23377569 DOI: 10.1007/S00726-012-1455-Z |
0.573 |
|
| 2013 |
Kroksveen AC, Aasebø E, Vethe H, Van Pesch V, Franciotta D, Teunissen CE, Ulvik RJ, Vedeler C, Myhr KM, Barsnes H, Berven FS. Discovery and initial verification of differentially abundant proteins between multiple sclerosis patients and controls using iTRAQ and SID-SRM. Journal of Proteomics. 78: 312-25. PMID 23059536 DOI: 10.1016/J.Jprot.2012.09.037 |
0.359 |
|
| 2012 |
Côté RG, Griss J, Dianes JA, Wang R, Wright JC, van den Toorn HW, van Breukelen B, Heck AJ, Hulstaert N, Martens L, Reisinger F, Csordas A, Ovelleiro D, Perez-Rivevol Y, Barsnes H, et al. The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium. Molecular & Cellular Proteomics : McP. 11: 1682-9. PMID 22949509 DOI: 10.1074/Mcp.O112.021543 |
0.633 |
|
| 2012 |
Aye TT, Low TY, Bjørlykke Y, Barsnes H, Heck AJ, Berven FS. Use of stable isotope dimethyl labeling coupled to selected reaction monitoring to enhance throughput by multiplexing relative quantitation of targeted proteins. Analytical Chemistry. 84: 4999-5006. PMID 22548487 DOI: 10.1021/Ac300596R |
0.356 |
|
| 2011 |
Colaert N, Barsnes H, Vaudel M, Helsens K, Timmerman E, Sickmann A, Gevaert K, Martens L. Thermo-msf-parser: an open source Java library to parse and visualize Thermo Proteome Discoverer msf files. Journal of Proteome Research. 10: 3840-3. PMID 21714566 DOI: 10.1021/Pr2005154 |
0.797 |
|
| 2011 |
Barsnes H, Vaudel M, Colaert N, Helsens K, Sickmann A, Berven FS, Martens L. compomics-utilities: an open-source Java library for computational proteomics. Bmc Bioinformatics. 12: 70. PMID 21385435 DOI: 10.1186/1471-2105-12-70 |
0.815 |
|
| 2011 |
Vaudel M, Barsnes H, Berven FS, Sickmann A, Martens L. SearchGUI: An open-source graphical user interface for simultaneous OMSSA and X!Tandem searches. Proteomics. 11: 996-9. PMID 21337703 DOI: 10.1002/Pmic.201000595 |
0.748 |
|
| 2011 |
Barsnes H, Eidhammer I, Martens L. A global analysis of peptide fragmentation variability. Proteomics. 11: 1181-8. PMID 21328539 DOI: 10.1002/Pmic.201000640 |
0.597 |
|
| 2011 |
Barsnes H, Vizcaíno JA, Reisinger F, Eidhammer I, Martens L. Submitting proteomics data to PRIDE using PRIDE Converter. Methods in Molecular Biology (Clifton, N.J.). 694: 237-53. PMID 21082439 DOI: 10.1007/978-1-60761-977-2_16 |
0.657 |
|
| 2011 |
Arntzen MØ, Koehler CJ, Barsnes H, Berven FS, Treumann A, Thiede B. IsobariQ: software for isobaric quantitative proteomics using IPTL, iTRAQ, and TMT. Journal of Proteome Research. 10: 913-20. PMID 21067241 DOI: 10.1021/Pr1009977 |
0.455 |
|
| 2010 |
Côté R, Reisinger F, Martens L, Barsnes H, Vizcaino JA, Hermjakob H. The Ontology Lookup Service: bigger and better. Nucleic Acids Research. 38: W155-60. PMID 20460452 DOI: 10.1093/Nar/Gkq331 |
0.572 |
|
| 2010 |
Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A. XTandem Parser: an open-source library to parse and analyse X!Tandem MS/MS search results. Proteomics. 10: 1522-4. PMID 20140905 DOI: 10.1002/Pmic.200900759 |
0.811 |
|
| 2010 |
Barsnes H, Côté RG, Eidhammer I, Martens L. OLS dialog: an open-source front end to the ontology lookup service. Bmc Bioinformatics. 11: 34. PMID 20078892 DOI: 10.1186/1471-2105-11-34 |
0.599 |
|
| 2010 |
Helsens K, Colaert N, Barsnes H, Muth T, Flikka K, Staes A, Timmerman E, Wortelkamp S, Sickmann A, Vandekerckhove J, Gevaert K, Martens L. ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics. Proteomics. 10: 1261-4. PMID 20058248 DOI: 10.1002/Pmic.200900409 |
0.785 |
|
| 2010 |
Barsnes H, Eidhammer I, Martens L. FragmentationAnalyzer: an open-source tool to analyze MS/MS fragmentation data. Proteomics. 10: 1087-90. PMID 20049869 DOI: 10.1002/Pmic.200900681 |
0.608 |
|
| 2010 |
Vizcaíno JA, Côté R, Reisinger F, Barsnes H, Foster JM, Rameseder J, Hermjakob H, Martens L. The Proteomics Identifications database: 2010 update. Nucleic Acids Research. 38: D736-42. PMID 19906717 DOI: 10.1093/Nar/Gkp964 |
0.663 |
|
| 2010 |
Muth T, Vaudel M, Barsnes H, Martens L, Sickmann A. Erratum: XTandem Parser: An open-source library to parse and analyse X!Tandem MS/MS search results Proteomics. 10: 2560-2560. DOI: 10.1002/pmic.201090058 |
0.694 |
|
| 2010 |
Barsnes H, Eidhammer I, Martens L. Erratum: FragmentationAnalyzer: An open-source tool to analyze MS/MS fragmentation data Proteomics. 10: 2560-2560. DOI: 10.1002/pmic.201090055 |
0.525 |
|
| 2009 |
Barsnes H, Huber S, Sickmann A, Eidhammer I, Martens L. OMSSA Parser: an open-source library to parse and extract data from OMSSA MS/MS search results. Proteomics. 9: 3772-4. PMID 19639591 DOI: 10.1002/Pmic.200900037 |
0.618 |
|
| 2009 |
Eisenacher M, Martens L, Barsnes H, Hardt T, Kohl M, Häkkinen J, Apweiler R, Meyer HE, Stephan C. Proteomics Data Collection - 5th ProDaC Workshop: 4 March 2009, Kolympari, Crete, Greece. Proteomics. 9: 3626-9. PMID 19639582 DOI: 10.1002/Pmic.200900205 |
0.605 |
|
| 2009 |
Eisenacher M, Martens L, Hardt T, Kohl M, Barsnes H, Helsens K, Häkkinen J, Levander F, Aebersold R, Vandekerckhove J, Dunn MJ, Lisacek F, Siepen JA, Hubbard SJ, Binz PA, et al. Getting a grip on proteomics data - Proteomics Data Collection (ProDaC). Proteomics. 9: 3928-33. PMID 19637238 DOI: 10.1002/Pmic.200900247 |
0.785 |
|
| 2009 |
Barsnes H, Vizcaíno JA, Eidhammer I, Martens L. PRIDE Converter: making proteomics data-sharing easy. Nature Biotechnology. 27: 598-9. PMID 19587657 DOI: 10.1038/Nbt0709-598 |
0.588 |
|
| 2009 |
Eisenacher M, Kohl M, Martens L, Barsnes H, Hardt T, Levander F, Häkkinen J, Apweiler R, Meyer HE, Stephan C. Proteomics data collection--4th ProDaC workshop 15 August 2008, Amsterdam, The Netherlands. Proteomics. 9: 218-22. PMID 19105180 DOI: 10.1002/Pmic.200800732 |
0.589 |
|
| 2008 |
Barsnes H, Mikalsen SO, Eidhammer I. Blind search for post-translational modifications and amino acid substitutions using peptide mass fingerprints from two proteases. Bmc Research Notes. 1: 130. PMID 19099572 DOI: 10.1186/1756-0500-1-130 |
0.381 |
|
| 2008 |
Barsnes H, Eidhammer I, Cruciani V, Mikalsen SO. Protease-dependent fractional mass and peptide properties. European Journal of Mass Spectrometry (Chichester, England). 14: 311-7. PMID 19023148 DOI: 10.1255/Ejms.934 |
0.343 |
|
| 2008 |
Eidhammer I, Barsnes H, Mikalsen SO. MassSorter: peptide mass fingerprinting data analysis. Methods in Molecular Biology (Clifton, N.J.). 484: 345-59. PMID 18592191 DOI: 10.1007/978-1-59745-398-1_23 |
0.429 |
|
| 2006 |
Barsnes H, Mikalsen SO, Eidhammer I. MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. Bmc Bioinformatics. 7: 42. PMID 16438723 DOI: 10.1186/1471-2105-7-42 |
0.421 |
|
| Show low-probability matches. |