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Gabriel Zentner - Publications

Affiliations: 
Indiana University, Bloomington, Bloomington, IN, United States 
Area:
Transcription, Mediator, CTCF
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Policastro RA, Zentner GE. Genome-Wide Profiling of Transcription Initiation with STRIPE-seq. Methods in Molecular Biology (Clifton, N.J.). 2477: 21-34. PMID 35524109 DOI: 10.1007/978-1-0716-2257-5_2  0.343
2021 Policastro RA, Zentner GE. Global approaches for profiling transcription initiation. Cell Reports Methods. 1. PMID 34632443 DOI: 10.1016/j.crmeth.2021.100081  0.326
2021 Saleh MM, Tourigny JP, Zentner GE. Genome-Wide Profiling of Protein-DNA Interactions with Chromatin Endogenous Cleavage and High-Throughput Sequencing (ChEC-Seq ). Methods in Molecular Biology (Clifton, N.J.). 2351: 289-303. PMID 34382196 DOI: 10.1007/978-1-0716-1597-3_16  0.49
2021 Policastro RA, McDonald DJ, Brendel VP, Zentner GE. Flexible analysis of TSS mapping data and detection of TSS shifts with TSRexploreR. Nar Genomics and Bioinformatics. 3: lqab051. PMID 34250478 DOI: 10.1093/nargab/lqab051  0.359
2020 Policastro RA, Raborn RT, Brendel VP, Zentner GE. Simple and efficient profiling of transcription initiation and transcript levels with STRIPE-seq. Genome Research. PMID 32660958 DOI: 10.1101/gr.261545.120  0.338
2020 Pugacheva EM, Kubo N, Loukinov D, Tajmul M, Kang S, Kovalchuk AL, Strunnikov AV, Zentner GE, Ren B, Lobanenkov VV. CTCF mediates chromatin looping via N-terminal domain-dependent cohesin retention. Proceedings of the National Academy of Sciences of the United States of America. PMID 31937660 DOI: 10.1073/Pnas.1911708117  0.472
2018 Bruzzone MJ, Grünberg S, Kubik S, Zentner GE, Shore D. Distinct patterns of histone acetyltransferase and Mediator deployment at yeast protein-coding genes. Genes & Development. PMID 30108132 DOI: 10.1101/gad.312173.118  0.321
2017 Lobanenkov VV, Zentner GE. Discovering a binary CTCF code with a little help from BORIS. Nucleus (Austin, Tex.). 1-9. PMID 29077515 DOI: 10.1080/19491034.2017.1394536  0.471
2017 Policastro RA, Zentner GE. Enzymatic methods for genome-wide profiling of protein binding sites. Briefings in Functional Genomics. PMID 29028882 DOI: 10.1093/bfgp/elx030  0.418
2017 Grünberg S, Zentner GE. Genome-wide Mapping of Protein-DNA Interactions with ChEC-seq in Saccharomyces cerevisiae. Journal of Visualized Experiments : Jove. PMID 28605389 DOI: 10.3791/55836  0.519
2017 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 8: 15723. PMID 28580964 DOI: 10.1038/ncomms15723  0.604
2017 Kasinathan S, Zentner GE, Xin B, Rohs R, Henikoff S. Correspondence: Reply to 'DNA shape is insufficient to explain binding'. Nature Communications. 8: 15644. PMID 28580953 DOI: 10.1038/ncomms15644  0.549
2017 Grünberg S, Zentner GE. Genome-wide characterization of Mediator recruitment, function, and regulation. Transcription. 8: 169-174. PMID 28301289 DOI: 10.1080/21541264.2017.1291082  0.343
2017 Rivero-Hinojosa S, Kang S, Lobanenkov VV, Zentner GE. Testis-specific transcriptional regulators selectively occupy BORIS-bound CTCF target regions in mouse male germ cells. Scientific Reports. 7: 41279. PMID 28145452 DOI: 10.1038/srep41279  0.44
2016 Grünberg S, Henikoff S, Hahn S, Zentner GE. Mediator binding to UASs is broadly uncoupled from transcription and cooperative with TFIID recruitment to promoters. The Embo Journal. PMID 27797823 DOI: 10.15252/embj.201695020  0.599
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. Corrigendum: ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 10264. PMID 26669278 DOI: 10.1038/ncomms10264  0.51
2015 Zentner GE, Kasinathan S, Xin B, Rohs R, Henikoff S. ChEC-seq kinetics discriminates transcription factor binding sites by DNA sequence and shape in vivo. Nature Communications. 6: 8733. PMID 26490019 DOI: 10.1038/ncomms9733  0.642
2015 Zentner GE, Henikoff S. Epigenome editing made easy. Nature Biotechnology. 33: 606-7. PMID 26057978 DOI: 10.1038/nbt.3248  0.45
2015 Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K. Mapping regulatory factors by immunoprecipitation from native chromatin. Current Protocols in Molecular Biology / Edited by Frederick M. Ausubel ... [Et Al.]. 110: 21.31.1-21.31.25. PMID 25827087 DOI: 10.1002/0471142727.mb2131s110  0.671
2015 Ramachandran S, Zentner GE, Henikoff S. Asymmetric nucleosomes flank promoters in the budding yeast genome. Genome Research. 25: 381-90. PMID 25491770 DOI: 10.1101/Gr.182618.114  0.661
2014 Zentner GE, Henikoff S. High-resolution digital profiling of the epigenome. Nature Reviews. Genetics. 15: 814-27. PMID 25297728 DOI: 10.1038/nrg3798  0.607
2014 Zentner GE, Balow SA, Scacheri PC. Genomic characterization of the mouse ribosomal DNA locus. G3 (Bethesda, Md.). 4: 243-54. PMID 24347625 DOI: 10.1534/g3.113.009290  0.4
2014 Kasinathan S, Orsi GA, Zentner GE, Ahmad K, Henikoff S. High-resolution mapping of transcription factor binding sites on native chromatin. Nature Methods. 11: 203-9. PMID 24336359 DOI: 10.1038/nmeth.2766  0.691
2013 Zentner GE, Henikoff S. Mot1 redistributes TBP from TATA-containing to TATA-less promoters. Molecular and Cellular Biology. 33: 4996-5004. PMID 24144978 DOI: 10.1128/MCB.01218-13  0.587
2013 Zentner GE, Tsukiyama T, Henikoff S. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. Plos Genetics. 9: e1003317. PMID 23468649 DOI: 10.1371/journal.pgen.1003317  0.639
2013 Zentner GE, Henikoff S. Regulation of nucleosome dynamics by histone modifications. Nature Structural & Molecular Biology. 20: 259-66. PMID 23463310 DOI: 10.1038/nsmb.2470  0.556
2013 Weeks LD, Zentner G, Scacheri P, Gerson SL. Abstract 4482: Pemetrexed treatment results in DNA replication fork instability and double strand breaks formation in UNG-/- human cancer cells. Cancer Research. 73: 4482-4482. DOI: 10.1158/1538-7445.Am2013-4482  0.427
2012 Zentner GE, Henikoff S. Surveying the epigenomic landscape, one base at a time. Genome Biology. 13: 250. PMID 23088423 DOI: 10.1186/gb4051  0.481
2011 Zentner GE, Tesar PJ, Scacheri PC. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. Genome Research. 21: 1273-83. PMID 21632746 DOI: 10.1101/gr.122382.111  0.312
2011 Zentner GE, Saiakhova A, Manaenkov P, Adams MD, Scacheri PC. Integrative genomic analysis of human ribosomal DNA. Nucleic Acids Research. 39: 4949-60. PMID 21355038 DOI: 10.1093/nar/gkq1326  0.525
2010 Zentner GE, Hurd EA, Schnetz MP, Handoko L, Wang C, Wang Z, Wei C, Tesar PJ, Hatzoglou M, Martin DM, Scacheri PC. CHD7 functions in the nucleolus as a positive regulator of ribosomal RNA biogenesis. Human Molecular Genetics. 19: 3491-501. PMID 20591827 DOI: 10.1093/Hmg/Ddq265  0.353
2009 Schnetz MP, Bartels CF, Shastri K, Balasubramanian D, Zentner GE, Balaji R, Zhang X, Song L, Wang Z, Laframboise T, Crawford GE, Scacheri PC. Genomic distribution of CHD7 on chromatin tracks H3K4 methylation patterns. Genome Research. 19: 590-601. PMID 19251738 DOI: 10.1101/Gr.086983.108  0.418
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