| Year |
Citation |
Score |
| 2023 |
Vlassis A, Jensen TL, Mohr M, Jedrzejczyk DJ, Meng X, Kovacs G, Morera-Gómez M, Barghetti A, Muyo Abad S, Baumgartner RF, Natarajan KN, Nielsen LK, Warnecke T, Gill RT. CRISPR-Cas12a-integrated transgenes in genomic safe harbors retain high expression in human hematopoietic iPSC-derived lineages and primary cells. Iscience. 26: 108287. PMID 38034357 DOI: 10.1016/j.isci.2023.108287 |
0.78 |
|
| 2023 |
Mohr M, Damas N, Gudmand-Høyer J, Zeeberg K, Jedrzejczyk D, Vlassis A, Morera-Gómez M, Pereira-Schoning S, Puš U, Oliver-Almirall A, Lyholm Jensen T, Baumgartner R, Tate Weinert B, Gill RT, Warnecke T. The CRISPR-Cas12a Platform for Accurate Genome Editing, Gene Disruption, and Efficient Transgene Integration in Human Immune Cells. Acs Synthetic Biology. 12: 375-389. PMID 36750230 DOI: 10.1021/acssynbio.2c00179 |
0.81 |
|
| 2020 |
Liu R, Liang L, Freed EF, Gill RT. Directed Evolution of CRISPR/Cas Systems for Precise Gene Editing. Trends in Biotechnology. PMID 32828556 DOI: 10.1016/J.Tibtech.2020.07.005 |
0.311 |
|
| 2020 |
Liu R, Liang L, Freed EF, Choudhury A, Eckert CA, Gill RT. Engineering regulatory networks for complex phenotypes in E. coli. Nature Communications. 11: 4050. PMID 32792485 DOI: 10.1038/S41467-020-17721-4 |
0.43 |
|
| 2020 |
Oh EJ, Liu R, Liang L, Freed EF, Eckert CA, Gill RT. Multiplex evolution of antibody fragments utilizing a yeast surface display platform. Acs Synthetic Biology. PMID 32551581 DOI: 10.1021/Acssynbio.0C00159 |
0.39 |
|
| 2020 |
Chen C, Choudhury A, Zhang S, Garst AD, Song X, Liu X, Chen T, Gill RT, Wang Z. Integrating CRISPR-Enabled Trackable Genome Engineering and Transcriptomic Analysis of Global Regulators for Antibiotic Resistance Selection and Identification in Escherichia coli. Msystems. 5. PMID 32317390 DOI: 10.1128/mSystems.00232-20 |
0.351 |
|
| 2020 |
Choudhury A, Fankhauser RG, Freed EF, Oh EJ, Morgenthaler AB, Bassalo M, Copley SD, Kaar JL, Gill RT. Determinants for efficient editing with Cas9-mediated recombineering in Escherichia coli. Acs Synthetic Biology. PMID 32298586 DOI: 10.1021/Acssynbio.9B00440 |
0.326 |
|
| 2020 |
Choudhury A, Fenster JA, Fankhauser RG, Kaar JL, Tenaillon O, Gill RT. CRISPR/Cas9 recombineering-mediated deep mutational scanning of essential genes in Escherichia coli. Molecular Systems Biology. 16: e9265. PMID 32175691 DOI: 10.15252/Msb.20199265 |
0.394 |
|
| 2019 |
Liu RM, Liang LL, Freed E, Chang H, Oh E, Liu ZY, Garst A, Eckert CA, Gill RT. Synthetic chimeric nucleases function for efficient genome editing. Nature Communications. 10: 5524. PMID 31797930 DOI: 10.1038/S41467-019-13500-Y |
0.432 |
|
| 2019 |
Heveran CM, Liang L, Nagarajan A, Hubler MH, Gill R, Cameron JC, Cook SM, Srubar WV. Engineered Ureolytic Microorganisms Can Tailor the Morphology and Nanomechanical Properties of Microbial-Precipitated Calcium Carbonate. Scientific Reports. 9: 14721. PMID 31604977 DOI: 10.1038/S41598-019-51133-9 |
0.377 |
|
| 2019 |
Liang L, Liu R, Foster KEO, AlakshChoudhury, Cook S, Cameron J, Srubar WV, Gill RT. Genome engineering of E. coli for improved styrene production and polymerization. Metabolic Engineering. PMID 31525473 DOI: 10.1016/J.Ymben.2019.09.007 |
0.473 |
|
| 2019 |
Corts AD, Thomason L, Gill RT, Gralnick JA. Efficient and Precise Genome Editing in Shewanella with Recombineering and CRISPR/Cas9-mediated Counter-selection. Acs Synthetic Biology. PMID 31277550 DOI: 10.1021/Acssynbio.9B00188 |
0.48 |
|
| 2019 |
Egbert RG, Rishi HS, Adler BA, McCormick DM, Toro E, Gill RT, Arkin AP. A versatile platform strain for high-fidelity multiplex genome editing. Nucleic Acids Research. PMID 30788501 DOI: 10.1093/Nar/Gkz085 |
0.513 |
|
| 2019 |
Corts AD, Thomason LC, Gill RT, Gralnick JA. A new recombineering system for precise genome-editing in Shewanella oneidensis strain MR-1 using single-stranded oligonucleotides. Scientific Reports. 9: 39. PMID 30631105 DOI: 10.1038/S41598-018-37025-4 |
0.47 |
|
| 2018 |
Bassalo MC, Garst AD, Choudhury A, Grau WC, Oh EJ, Spindler E, Lipscomb T, Gill RT. Deep scanning lysine metabolism in . Molecular Systems Biology. 14: e8371. PMID 30478237 DOI: 10.15252/Msb.20188371 |
0.429 |
|
| 2018 |
Pines G, Oh EJ, Bassalo MC, Choudhury A, Garst AD, Fankhauser RG, Eckert CA, Gill RT. Genomic Deoxyxylulose Phosphate Reductoisomerase (DXR) Mutations Conferring Resistance to the Antimalarial Drug Fosmidomycin in E. coli. Acs Synthetic Biology. PMID 30462485 DOI: 10.1021/Acssynbio.8B00219 |
0.443 |
|
| 2018 |
Liang L, Heveran CM, Liu R, Gill RT, Nagarajan A, Cameron J, Hubler MH, Srubar Iii WV, Cook SM. Rational Control of Calcium Carbonate Precipitation by Engineered Escherichia coli. Acs Synthetic Biology. PMID 30384588 DOI: 10.1021/Acssynbio.8B00194 |
0.363 |
|
| 2018 |
Liu R, Liang L, Choudhury A, Garst AD, Eckert CA, Oh EJ, Winkler J, Gill RT. Multiplex Navigation of Global Regulatory Networks (MINR) in yeast for Improved Ethanol Tolerance and Production. Metabolic Engineering. PMID 30030154 DOI: 10.1016/J.Ymben.2018.07.007 |
0.406 |
|
| 2018 |
Tarasava K, Oh EJ, Eckert CA, Gill RT. CRISPR-enabled tools for engineering microbial genomes and phenotypes. Biotechnology Journal. e1700586. PMID 29917318 DOI: 10.1002/Biot.201700586 |
0.455 |
|
| 2018 |
Pines G, Gill RT. Dynamic Management of Codon Compression for Saturation Mutagenesis. Methods in Molecular Biology (Clifton, N.J.). 1772: 171-189. PMID 29754228 DOI: 10.1007/978-1-4939-7795-6_9 |
0.359 |
|
| 2018 |
Freed E, Fenster J, Smolinski SL, Walker J, Henard CA, Gill R, Eckert CA. Building a genome engineering toolbox in non-model prokaryotic microbes. Biotechnology and Bioengineering. PMID 29750332 DOI: 10.1002/Bit.26727 |
0.446 |
|
| 2018 |
Liu R, Liang L, Choudhury A, Bassalo MC, Garst AD, Tarasava K, Gill RT. Iterative Genome Editing of Escherichia coli for 3-Hydroxypropionic Acid Production. Metabolic Engineering. PMID 29665411 DOI: 10.1016/J.Ymben.2018.04.007 |
0.566 |
|
| 2018 |
Tarasava K, Liu R, Garst A, Gill RT. Combinatorial pathway engineering using Type I-E CRISPR interference. Biotechnology and Bioengineering. PMID 29537074 DOI: 10.1002/Bit.26589 |
0.491 |
|
| 2018 |
Liu R, Liang L, Garst AD, Choudhury A, Nogué VSI, Beckham GT, Gill RT. Directed combinatorial mutagenesis of Escherichia coli for complex phenotype engineering. Metabolic Engineering. PMID 29477855 DOI: 10.1016/J.Ymben.2018.02.007 |
0.552 |
|
| 2017 |
Karp EM, Eaton TR, Sànchez I Nogué V, Vorotnikov V, Biddy MJ, Tan ECD, Brandner DG, Cywar RM, Liu R, Manker LP, Michener WE, Gilhespy M, Skoufa Z, Watson MJ, Fruchey OS, ... ... Gill RT, et al. Renewable acrylonitrile production. Science (New York, N.Y.). 358: 1307-1310. PMID 29217572 DOI: 10.1126/Science.Aan1059 |
0.301 |
|
| 2017 |
Pines G, Winkler JD, Pines A, Gill RT. Refactoring the Genetic Code for Increased Evolvability. Mbio. 8. PMID 29138304 DOI: 10.1128/Mbio.01654-17 |
0.386 |
|
| 2017 |
Erickson KE, Winkler JD, Nyugen D, Gill RT, Chatterjee A. The Tolerome: A database of transcriptome-level contributions to diverse Escherichia coli resistance and tolerance phenotypes. Acs Synthetic Biology. PMID 29017328 DOI: 10.1021/Acssynbio.7B00235 |
0.459 |
|
| 2017 |
Steele Reynolds T, Courtney CM, Erickson KE, Wolfe LM, Chatterjee A, Nagpal P, Gill RT. ROS Mediated Selection for Increased NADPH Availability in Escherichia coli. Biotechnology and Bioengineering. PMID 28710857 DOI: 10.1002/Bit.26385 |
0.429 |
|
| 2017 |
Liang L, Liu R, Garst AD, Lee T, Nogué VS, Beckham GT, Gill RT. CRISPR EnAbled Trackable genome Engineering for isopropanol production in Escherichia coli. Metabolic Engineering. PMID 28216108 DOI: 10.1016/J.Ymben.2017.02.009 |
0.433 |
|
| 2017 |
Zeitoun R, Pines G, Grau WC, Gill RT. Quantitative tracking of combinatorially engineered populations with multiplexed binary assemblies. Acs Synthetic Biology. PMID 28103008 DOI: 10.1021/Acssynbio.6B00376 |
0.479 |
|
| 2016 |
Winkler JD, Halweg-Edwards AL, Gill RT. Quantifying complexity in metabolic engineering using the LASER database. Metabolic Engineering Communications. 3: 227-233. PMID 29468127 DOI: 10.1016/J.Meteno.2016.07.002 |
0.379 |
|
| 2016 |
Garst AD, Bassalo MC, Pines G, Lynch SA, Halweg-Edwards AL, Liu R, Liang L, Wang Z, Zeitoun R, Alexander WG, Gill RT. Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering. Nature Biotechnology. PMID 27941803 DOI: 10.1038/Nbt.3718 |
0.522 |
|
| 2016 |
Groot AJ, Cepress-Mclean SC, Robbins-Pianka A, Knight R, Gill RT. Multiplex growth rate phenotyping of synthetic mutants in selection to engineer glucose and xylose co-utilization in Escherichia coli. Biotechnology and Bioengineering. PMID 27861733 DOI: 10.1002/Bit.26217 |
0.417 |
|
| 2016 |
Winkler JD, Halweg-Edwards AL, Erickson KE, Choudhury A, Pines G, Gill RT. The Resistome: A Comprehensive Database of Escherichia coli Resistance Phenotypes. Acs Synthetic Biology. PMID 27438180 DOI: 10.1021/Acssynbio.6B00150 |
0.363 |
|
| 2016 |
Halweg-Edwards AL, Pines G, Winkler JD, Pines A, Gill RT. A Web Interface for Codon Compression. Acs Synthetic Biology. PMID 27169595 DOI: 10.1021/Acssynbio.6B00026 |
0.355 |
|
| 2016 |
Bassalo MC, Garst AD, Halweg-Edwards AL, Grau WC, Domaille DW, Mutalik V, Arkin AP, Gill RT. Rapid and efficient one-step metabolic pathway integration in E. coli. Acs Synthetic Biology. PMID 27072506 DOI: 10.1021/Acssynbio.5B00187 |
0.486 |
|
| 2016 |
Bassalo MC, Liu R, Gill RT. Directed evolution and synthetic biology applications to microbial systems. Current Opinion in Biotechnology. 39: 126-133. PMID 27054950 DOI: 10.1016/J.Copbio.2016.03.016 |
0.393 |
|
| 2016 |
Weiss SJ, Mansell TJ, Mortazavi P, Knight R, Gill RT. Parallel Mapping of Antibiotic Resistance Alleles in Escherichia coli. Plos One. 11: e0146916. PMID 26771672 DOI: 10.1371/Journal.Pone.0146916 |
0.438 |
|
| 2016 |
Lynch S, Eckert C, Yu J, Gill R, Maness PC. Overcoming substrate limitations for improved production of ethylene in E. coli. Biotechnology For Biofuels. 9: 3. PMID 26734073 DOI: 10.1186/S13068-015-0413-X |
0.35 |
|
| 2016 |
Gill RT, Halweg-Edwards AL, Clauset A, Way SF. Synthesis aided design: The biological design-build-test engineering paradigm? Biotechnology and Bioengineering. 113: 7-10. PMID 26580431 DOI: 10.1002/Bit.25857 |
0.303 |
|
| 2015 |
Freed EF, Winkler JD, Weiss SJ, Garst AD, Mutalik VK, Arkin AP, Knight R, Gill RT. Genome-Wide Tuning of Protein Expression Levels to Rapidly Engineer Microbial Traits. Acs Synthetic Biology. PMID 26478262 DOI: 10.1021/Acssynbio.5B00133 |
0.464 |
|
| 2015 |
Liu R, Bassalo MC, Zeitouna RI, Gill RT. Genome scale engineering techniques for metabolic engineering. Metabolic Engineering. PMID 26453944 DOI: 10.1016/J.Ymben.2015.09.013 |
0.471 |
|
| 2015 |
Winkler JD, Erickson K, Choudhury A, Halweg-Edwards AL, Gill RT. Complex systems in metabolic engineering. Current Opinion in Biotechnology. 36: 107-114. PMID 26319897 DOI: 10.1016/J.Copbio.2015.08.002 |
0.419 |
|
| 2015 |
Halweg-Edwards AL, Grau WC, Winkler JD, Garst AD, Gill RT. The emergence of commodity-scale genetic manipulation. Current Opinion in Chemical Biology. 28: 150-5. PMID 26302383 DOI: 10.1016/J.Cbpa.2015.07.009 |
0.438 |
|
| 2015 |
Pines G, Freed EF, Winkler JD, Gill RT. Bacterial Recombineering: Genome Engineering via Phage-Based Homologous Recombination. Acs Synthetic Biology. PMID 25856528 DOI: 10.1021/Acssynbio.5B00009 |
0.493 |
|
| 2015 |
Zeitoun RI, Garst AD, Degen GD, Pines G, Mansell TJ, Glebes TY, Boyle NR, Gill RT. Multiplexed tracking of combinatorial genomic mutations in engineered cell populations. Nature Biotechnology. 33: 631-7. PMID 25798935 DOI: 10.1038/Nbt.3177 |
0.498 |
|
| 2015 |
Reynolds TS, Gill RT. Quantifying Impact of Chromosome Copy Number on Recombination in Escherichia coli. Acs Synthetic Biology. 4: 776-80. PMID 25763604 DOI: 10.1021/Sb500338G |
0.436 |
|
| 2015 |
Pines G, Pines A, Garst AD, Zeitoun RI, Lynch SA, Gill RT. Codon compression algorithms for saturation mutagenesis. Acs Synthetic Biology. 4: 604-14. PMID 25303315 DOI: 10.1021/Sb500282V |
0.406 |
|
| 2015 |
Glebes TY, Sandoval NR, Gillis JH, Gill RT. Comparison of genome-wide selection strategies to identify furfural tolerance genes in Escherichia coli. Biotechnology and Bioengineering. 112: 129-40. PMID 24981318 DOI: 10.1002/Bit.25325 |
0.797 |
|
| 2015 |
Winkler JD, Halweg-Edwards AL, Gill RT. The LASER database: Formalizing design rules for metabolic engineering Metabolic Engineering Communications. 2: 30-38. DOI: 10.1016/J.Meteno.2015.06.003 |
0.382 |
|
| 2014 |
Erickson KE, Gill RT, Chatterjee A. CONSTRICTOR: constraint modification provides insight into design of biochemical networks. Plos One. 9: e113820. PMID 25422896 DOI: 10.1371/Journal.Pone.0113820 |
0.439 |
|
| 2014 |
Eckert C, Xu W, Xiong W, Lynch S, Ungerer J, Tao L, Gill R, Maness PC, Yu J. Ethylene-forming enzyme and bioethylene production. Biotechnology For Biofuels. 7: 33. PMID 24589138 DOI: 10.1186/1754-6834-7-33 |
0.373 |
|
| 2014 |
Glebes TY, Sandoval NR, Reeder PJ, Schilling KD, Zhang M, Gill RT. Genome-wide mapping of furfural tolerance genes in Escherichia coli. Plos One. 9: e87540. PMID 24489935 DOI: 10.1371/Journal.Pone.0087540 |
0.81 |
|
| 2014 |
Gill RT, Hatzimanikatis V. Introduction to metabolic engineering communications Metabolic Engineering Communications. 1: 29. DOI: 10.1016/J.Meteno.2014.11.002 |
0.333 |
|
| 2013 |
Garst A, Lynch M, Evans R, Gill RT. Strategies for the multiplex mapping of genes to traits. Microbial Cell Factories. 12: 99. PMID 24171944 DOI: 10.1186/1475-2859-12-99 |
0.491 |
|
| 2013 |
Pandhal J, Woodruff LB, Jaffe S, Desai P, Ow SY, Noirel J, Gill RT, Wright PC. Inverse metabolic engineering to improve Escherichia coli as an N-glycosylation host. Biotechnology and Bioengineering. 110: 2482-93. PMID 23568537 DOI: 10.1002/Bit.24920 |
0.813 |
|
| 2013 |
Nordwald EM, Garst A, Gill RT, Kaar JL. Accelerated protein engineering for chemical biotechnology via homologous recombination. Current Opinion in Biotechnology. 24: 1017-22. PMID 23540421 DOI: 10.1016/J.Copbio.2013.03.003 |
0.398 |
|
| 2013 |
Boyle NR, Reynolds TS, Evans R, Lynch M, Gill RT. Recombineering to homogeneity: extension of multiplex recombineering to large-scale genome editing. Biotechnology Journal. 8: 515-22. PMID 23436787 DOI: 10.1002/Biot.201200237 |
0.382 |
|
| 2013 |
Mansell TJ, Warner JR, Gill RT. Trackable multiplex recombineering for gene-trait mapping in E. coli. Methods in Molecular Biology (Clifton, N.J.). 985: 223-46. PMID 23417807 DOI: 10.1007/978-1-62703-299-5_12 |
0.479 |
|
| 2013 |
Spindler EC, Boyle NR, Hancock RE, Gill RT. Genome-wide identification of genes conferring energy related resistance to a synthetic antimicrobial peptide (Bac8c). Plos One. 8: e55052. PMID 23383054 DOI: 10.1371/Journal.Pone.0055052 |
0.44 |
|
| 2013 |
Woodruff LB, Boyle NR, Gill RT. Engineering improved ethanol production in Escherichia coli with a genome-wide approach. Metabolic Engineering. 17: 1-11. PMID 23376594 DOI: 10.1016/J.Ymben.2013.01.006 |
0.806 |
|
| 2013 |
Woodruff LB, May BL, Warner JR, Gill RT. Towards a metabolic engineering strain "commons": an Escherichia coli platform strain for ethanol production. Biotechnology and Bioengineering. 110: 1520-6. PMID 23322646 DOI: 10.1002/Bit.24840 |
0.813 |
|
| 2013 |
Woodruff LBA, Pandhal J, Ow SY, Karimpour-Fard A, Weiss SJ, Wright PC, Gill RT. Genome-scale identification and characterization of ethanol tolerance genes in Escherichia coli Metabolic Engineering. 15: 124-133. PMID 23164575 DOI: 10.1016/J.Ymben.2012.10.007 |
0.47 |
|
| 2013 |
Chaput C, Spindler E, Gill RT, Zychlinsky A. Involvement of the selected genes in the colanic acid pathway and cloning under arabinose promoter. Plos One. DOI: 10.1371/Journal.Pone.0071097.G002 |
0.404 |
|
| 2012 |
Sandoval NR, Kim JY, Glebes TY, Reeder PJ, Aucoin HR, Warner JR, Gill RT. Strategy for directing combinatorial genome engineering in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 109: 10540-5. PMID 22689973 DOI: 10.1073/Pnas.1206299109 |
0.798 |
|
| 2012 |
Boyle NR, Gill RT. Tools for genome-wide strain design and construction Current Opinion in Biotechnology. 23: 666-671. PMID 22357141 DOI: 10.1016/J.Copbio.2012.01.012 |
0.465 |
|
| 2012 |
Lynch SA, Gill RT. Synthetic biology: new strategies for directing design. Metabolic Engineering. 14: 205-11. PMID 22227399 DOI: 10.1016/J.Ymben.2011.12.007 |
0.469 |
|
| 2012 |
Warnecke TE, Lynch MD, Lipscomb ML, Gill RT. Identification of a 21 amino acid peptide conferring 3-hydroxypropionic acid stress-tolerance to Escherichia coli. Biotechnology and Bioengineering. 109: 1347-52. PMID 22161628 DOI: 10.1002/Bit.24398 |
0.813 |
|
| 2011 |
Woodruff LB, Gill RT. Engineering genomes in multiplex. Current Opinion in Biotechnology. 22: 576-83. PMID 21592776 DOI: 10.1016/J.Copbio.2011.04.019 |
0.815 |
|
| 2011 |
Spindler EC, Hale JD, Giddings TH, Hancock RE, Gill RT. Deciphering the mode of action of the synthetic antimicrobial peptide Bac8c. Antimicrobial Agents and Chemotherapy. 55: 1706-16. PMID 21282431 DOI: 10.1128/Aac.01053-10 |
0.307 |
|
| 2011 |
Sandoval NR, Mills TY, Zhang M, Gill RT. Elucidating acetate tolerance in E. coli using a genome-wide approach. Metabolic Engineering. 13: 214-24. PMID 21163359 DOI: 10.1016/J.Ymben.2010.12.001 |
0.805 |
|
| 2011 |
Handke P, Lynch SA, Gill RT. Application and engineering of fatty acid biosynthesis in Escherichia coli for advanced fuels and chemicals. Metabolic Engineering. 13: 28-37. PMID 21056114 DOI: 10.1016/J.Ymben.2010.10.007 |
0.773 |
|
| 2011 |
Singh A, Cher Soh K, Hatzimanikatis V, Gill RT. Manipulating redox and ATP balancing for improved production of succinate in E. coli. Metabolic Engineering. 13: 76-81. PMID 21040799 DOI: 10.1016/J.Ymben.2010.10.006 |
0.468 |
|
| 2010 |
Warner JR, Reeder PJ, Karimpour-Fard A, Woodruff LB, Gill RT. Rapid profiling of a microbial genome using mixtures of barcoded oligonucleotides. Nature Biotechnology. 28: 856-62. PMID 20639866 DOI: 10.1038/Nbt.1653 |
0.821 |
|
| 2010 |
Singh A, Karimpour-Fard A, Gill RT. Increased mutation frequency in redox-impaired Escherichia coli due to RelA- and RpoS-mediated repression of DNA repair. Applied and Environmental Microbiology. 76: 5463-70. PMID 20581184 DOI: 10.1128/Aem.00583-10 |
0.404 |
|
| 2010 |
Prior JE, Lynch MD, Gill RT. Broad-host-range vectors for protein expression across gram negative hosts. Biotechnology and Bioengineering. 106: 326-32. PMID 20148414 DOI: 10.1002/Bit.22695 |
0.341 |
|
| 2010 |
Warnecke TE, Lynch MD, Karimpour-Fard A, Lipscomb ML, Handke P, Mills T, Ramey CJ, Hoang T, Gill RT. Rapid dissection of a complex phenotype through genomic-scale mapping of fitness altering genes. Metabolic Engineering. 12: 241-50. PMID 20060059 DOI: 10.1016/J.Ymben.2009.12.002 |
0.78 |
|
| 2010 |
Prior JE, Shokati T, Christians U, Gill RT. Identification and characterization of a bacterial cytochrome P450 for the metabolism of diclofenac. Applied Microbiology and Biotechnology. 85: 625-33. PMID 19636551 DOI: 10.1007/S00253-009-2135-0 |
0.317 |
|
| 2009 |
Struble JM, Gill RT. Genome-scale identification method applied to find cryptic aminoglycoside resistance genes in Pseudomonas aeruginosa. Plos One. 4: e6576. PMID 19907650 DOI: 10.1371/Journal.Pone.0006576 |
0.778 |
|
| 2009 |
Mills TY, Sandoval NR, Gill RT. Cellulosic hydrolysate toxicity and tolerance mechanisms in Escherichia coli. Biotechnology For Biofuels. 2: 26. PMID 19832972 DOI: 10.1186/1754-6834-2-26 |
0.758 |
|
| 2009 |
Singh A, Lynch MD, Gill RT. Genes restoring redox balance in fermentation-deficient E. coli NZN111. Metabolic Engineering. 11: 347-54. PMID 19628049 DOI: 10.1016/J.Ymben.2009.07.002 |
0.439 |
|
| 2009 |
Warner JR, Patnaik R, Gill RT. Genomics enabled approaches in strain engineering. Current Opinion in Microbiology. 12: 223-30. PMID 19467921 DOI: 10.1016/J.Mib.2009.04.005 |
0.539 |
|
| 2008 |
Karimpour-Fard A, Leach SM, Gill RT, Hunter LE. Predicting protein linkages in bacteria: which method is best depends on task. Bmc Bioinformatics. 9: 397. PMID 18816389 DOI: 10.1186/1471-2105-9-397 |
0.325 |
|
| 2008 |
Drevinek P, Holden MT, Ge Z, Jones AM, Ketchell I, Gill RT, Mahenthiralingam E. Gene expression changes linked to antimicrobial resistance, oxidative stress, iron depletion and retained motility are observed when Burkholderia cenocepacia grows in cystic fibrosis sputum. Bmc Infectious Diseases. 8: 121. PMID 18801206 DOI: 10.1186/1471-2334-8-121 |
0.35 |
|
| 2008 |
Gall S, Lynch MD, Sandoval NR, Gill RT. Parallel mapping of genotypes to phenotypes contributing to overall biological fitness. Metabolic Engineering. 10: 382-393. PMID 18789396 DOI: 10.1016/J.Ymben.2008.08.003 |
0.805 |
|
| 2008 |
Warnecke TE, Lynch MD, Karimpour-Fard A, Sandoval N, Gill RT. A genomics approach to improve the analysis and design of strain selections. Metabolic Engineering. 10: 154-65. PMID 18514004 DOI: 10.1016/J.Ymben.2008.04.004 |
0.802 |
|
| 2008 |
Bonomo J, Lynch MD, Warnecke T, Price JV, Gill RT. Genome-scale analysis of anti-metabolite directed strain engineering Metabolic Engineering. 10: 109-120. PMID 18093856 DOI: 10.1016/J.Ymben.2007.10.002 |
0.798 |
|
| 2007 |
Coenye T, Drevinek P, Mahenthiralingam E, Shah SA, Gill RT, Vandamme P, Ussery DW. Identification of putative noncoding RNA genes in the Burkholderia cenocepacia J2315 genome. Fems Microbiology Letters. 276: 83-92. PMID 17937666 DOI: 10.1111/J.1574-6968.2007.00916.X |
0.402 |
|
| 2007 |
Lynch MD, Warnecke T, Gill RT. SCALEs: multiscale analysis of library enrichment. Nature Methods. 4: 87-93. PMID 17099705 DOI: 10.1038/Nmeth946 |
0.819 |
|
| 2006 |
Struble JM, Gill RT. Reverse engineering antibiotic sensitivity in a multidrug-resistant Pseudomonas aeruginosa isolate. Antimicrobial Agents and Chemotherapy. 50: 2506-15. PMID 16801433 DOI: 10.1128/Aac.01640-05 |
0.787 |
|
| 2006 |
Leiske DL, Karimpour-Fard A, Hume PS, Fairbanks BD, Gill RT. A comparison of alternative 60-mer probe designs in an in-situ synthesized oligonucleotide microarray. Bmc Genomics. 7: 72. PMID 16595014 DOI: 10.1186/1471-2164-7-72 |
0.346 |
|
| 2006 |
Bonomo J, Warnecke T, Hume P, Marizcurrena A, Gill RT. A comparative study of metabolic engineering anti-metabolite tolerance in Escherichia coli Metabolic Engineering. 8: 227-239. PMID 16497527 DOI: 10.1016/J.Ymben.2005.12.005 |
0.786 |
|
| 2006 |
Lynch MD, Gill RT. Broad host range vectors for stable genomic library construction. Biotechnology and Bioengineering. 94: 151-8. PMID 16496398 DOI: 10.1002/Bit.20836 |
0.384 |
|
| 2005 |
Warnecke T, Gill RT. Organic acid toxicity, tolerance, and production in Escherichia coli biorefining applications. Microbial Cell Factories. 4: 25. PMID 16122392 DOI: 10.1186/1475-2859-4-25 |
0.797 |
|
| 2005 |
Dai M, Ziesman S, Ratcliffe T, Gill RT, Copley SD. Visualization of protoplast fusion and quantitation of recombination in fused protoplasts of auxotrophic strains of Escherichia coli. Metabolic Engineering. 7: 45-52. PMID 15974564 DOI: 10.1016/J.Ymben.2004.09.002 |
0.435 |
|
| 2005 |
Bonomo J, Gill RT. Amino acid content of recombinant proteins influences the metabolic burden response. Biotechnology and Bioengineering. 90: 116-26. PMID 15736162 DOI: 10.1002/Bit.20436 |
0.796 |
|
| 2005 |
Bonomo J, Gill RT. Antibiotic resistance as a model for strain engineering Computers & Chemical Engineering. 29: 509-517. DOI: 10.1016/J.Compchemeng.2004.08.028 |
0.812 |
|
| 2004 |
Lynch MD, Gill RT, Stephanopoulos G. Mapping phenotypic landscapes using DNA micro-arrays. Metabolic Engineering. 6: 177-85. PMID 15256207 DOI: 10.1016/J.Ymben.2004.01.002 |
0.629 |
|
| 2004 |
Gill RT, Dodge T. Special issue on inverse metabolic engineering Metabolic Engineering. 6: 175-176. DOI: 10.1016/J.Ymben.2004.04.002 |
0.367 |
|
| 2003 |
Gill RT. Enabling inverse metabolic engineering through genomics. Current Opinion in Biotechnology. 14: 484-90. PMID 14580577 DOI: 10.1016/S0958-1669(03)00116-2 |
0.51 |
|
| 2002 |
Gill RT, Katsoulakis E, Schmitt W, Taroncher-Oldenburg G, Misra J, Stephanopoulos G. Genome-wide dynamic transcriptional profiling of the light-to-dark transition in Synechocystis sp. strain PCC 6803. Journal of Bacteriology. 184: 3671-81. PMID 12057963 DOI: 10.1128/Jb.184.13.3671-3681.2002 |
0.533 |
|
| 2002 |
Gill RT, Wildt S, Yang YT, Ziesman S, Stephanopoulos G. Genome-wide screening for trait conferring genes using DNA microarrays. Proceedings of the National Academy of Sciences of the United States of America. 99: 7033-8. PMID 11997466 DOI: 10.1073/Pnas.102154799 |
0.61 |
|
| 2002 |
Stephanopoulos G, Gill RT. After a decade of progress, an expanded role for metabolic engineering. Advances in Biochemical Engineering/Biotechnology. 73: 1-8. PMID 11816808 DOI: 10.1007/3-540-45300-8_1 |
0.584 |
|
| 2001 |
Gill RT, DeLisa MP, Valdes JJ, Bentley WE. Genomic analysis of high-cell-density recombinant Escherichia coli fermentation and "cell conditioning" for improved recombinant protein yield Biotechnology and Bioengineering. 72: 85-95. PMID 11084598 DOI: 10.1002/1097-0290(20010105)72:1<85::Aid-Bit12>3.0.Co;2-H |
0.542 |
|
| 2000 |
Gill RT, Valdes JJ, Bentley WE. A comparative study of global stress gene regulation in response to overexpression of recombinant proteins in Escherichia coli. Metabolic Engineering. 2: 178-189. PMID 11056060 DOI: 10.1006/Mben.2000.0148 |
0.579 |
|
| 1999 |
Gill RT, Valdes JJ, Bentley WE. Reverse Transcription-PCR Differential Display Analysis of Escherichia coli Global Gene Regulation in Response to Heat Shock Applied and Environmental Microbiology. 65: 5386-5393. PMID 10583993 DOI: 10.1128/Aem.65.12.5386-5393.1999 |
0.522 |
|
| 1998 |
Gill RT, Cha HJ, Jain A, Rao G, Bentley WE. Generating controlled reducing environments in aerobic recombinant Escherichia coli fermentations: Effects on cell growth, oxygen uptake, heat shock protein expression, and in vivo CAT activity Biotechnology and Bioengineering. 59: 248-259. PMID 10099335 DOI: 10.1002/(Sici)1097-0290(19980720)59:2<248::Aid-Bit12>3.0.Co;2-A |
0.609 |
|
| 1998 |
Bentley WE, Madurawe RD, Gill RT, Shiloach M, Chase TE, Pulliam-Holoman TR, Valdes JJ. Generation of a histidine-tagged antibotulinum toxin antibody fragment in E. coli : effects of post-induction temperature on yield and IMAC binding-affinity Journal of Industrial Microbiology & Biotechnology. 21: 275-282. DOI: 10.1038/Sj.Jim.2900577 |
0.512 |
|
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