| Year |
Citation |
Score |
| 2022 |
Gao S, Dai Z, Xu H, Lai L. Pinpointing Cancer Sub-Type Specific Metabolic Tasks Facilitates Identification of Anti-cancer Targets. Frontiers in Medicine. 9: 872024. PMID 35402442 DOI: 10.3389/fmed.2022.872024 |
0.619 |
|
| 2020 |
Yun T, Wang J, Yang J, Huang W, Lai L, Tan W, Liu Y. Discovery of Small Molecule Inhibitors Targeting the Sonic Hedgehog. Frontiers in Chemistry. 8: 498. PMID 32612978 DOI: 10.3389/Fchem.2020.00498 |
0.343 |
|
| 2020 |
Liang H, Liu H, Kuang Y, Chen L, Ye M, Lai L. Discovery of targeted covalent natural products against PLK1 by herb-based screening. Journal of Chemical Information and Modeling. PMID 32407091 DOI: 10.1021/Acs.Jcim.0C00074 |
0.319 |
|
| 2020 |
Xie J, Lai L. Protein topology and allostery. Current Opinion in Structural Biology. 62: 158-165. PMID 32066080 DOI: 10.1016/J.Sbi.2020.01.011 |
0.332 |
|
| 2019 |
Yang W, Sun X, Zhang C, Lai L. Discovery of novel helix binding sites at protein-protein interfaces. Computational and Structural Biotechnology Journal. 17: 1396-1403. PMID 31768230 DOI: 10.1016/J.Csbj.2019.11.001 |
0.44 |
|
| 2019 |
Dai Z, Yang S, Xu L, Hu H, Liao K, Wang J, Wang Q, Gao S, Li B, Lai L. Identification of Cancer-associated metabolic vulnerabilities by modeling multi-objective optimality in metabolism. Cell Communication and Signaling : Ccs. 17: 124. PMID 31601242 DOI: 10.1186/S12964-019-0439-Y |
0.643 |
|
| 2019 |
Yang W, Zhang Q, Zhang C, Guo A, Wang Y, You H, Zhang X, Lai L. Computational Design and Optimization of Novel D-peptide TNFα Inhibitors. Febs Letters. PMID 31102258 DOI: 10.1002/1873-3468.13444 |
0.39 |
|
| 2019 |
Rossetti G, Kless A, Lai L, Outeiro TF, Carloni P. Investigating targets for neuropharmacological intervention by molecular dynamics simulations. Biochemical Society Transactions. PMID 31085614 DOI: 10.1042/Bst20190048 |
0.303 |
|
| 2019 |
Xu Y, Lin K, Wang S, Wang L, Cai C, Song C, Lai L, Pei J. Deep learning for molecular generation. Future Medicinal Chemistry. PMID 30698019 DOI: 10.4155/Fmc-2018-0358 |
0.3 |
|
| 2018 |
Reid MA, Allen AE, Liu S, Liberti MV, Liu P, Liu X, Dai Z, Gao X, Wang Q, Liu Y, Lai L, Locasale JW. Serine synthesis through PHGDH coordinates nucleotide levels by maintaining central carbon metabolism. Nature Communications. 9: 5442. PMID 30575741 DOI: 10.1038/S41467-018-07868-6 |
0.712 |
|
| 2018 |
Chen X, Xiao-Lin S, Yang W, Yang B, Zhao X, Chen S, He L, Chen H, Yang C, Xiao L, Chang Z, Guo J, He J, Zhang F, Zheng F, ... ... Lai L, et al. An autoimmune disease variant of IgG1 modulates B cell activation and differentiation. Science (New York, N.Y.). PMID 30287618 DOI: 10.1126/Science.Aap9310 |
0.306 |
|
| 2018 |
Ruan H, Sun Q, Zhang W, Liu Y, Lai L. Targeting intrinsically disordered proteins at the edge of chaos. Drug Discovery Today. PMID 30278223 DOI: 10.1016/J.Drudis.2018.09.017 |
0.348 |
|
| 2018 |
Liu H, Liang H, Meng H, Deng X, Zhang X, Lai L. A novel allosteric inhibitor that prevents IKKβ activation. Medchemcomm. 9: 239-243. PMID 30108917 DOI: 10.1039/C7Md00599G |
0.312 |
|
| 2018 |
Yu M, Ma X, Cao H, Chong B, Lai L, Liu Z. Singular value decomposition for the correlation of atomic fluctuations with arbitrary angle. Proteins. PMID 30019778 DOI: 10.1002/Prot.25586 |
0.327 |
|
| 2018 |
Meng H, Dai Z, Zhang W, Liu Y, Lai L. Molecular mechanism of 15-lipoxygenase allosteric activation and inhibition. Physical Chemistry Chemical Physics : Pccp. PMID 29780994 DOI: 10.1039/C7Cp08586A |
0.679 |
|
| 2018 |
Xu Y, Wang S, Hu Q, Gao S, Ma X, Zhang W, Shen Y, Chen F, Lai L, Pei J. CavityPlus: a web server for protein cavity detection with pharmacophore modelling, allosteric site identification and covalent ligand binding ability prediction. Nucleic Acids Research. PMID 29750256 DOI: 10.1093/Nar/Gky380 |
0.365 |
|
| 2018 |
Li C, Deng X, Zhang W, Xie X, Conrad M, Liu Y, Angeli JPF, Lai L. Novel Allosteric Activators for Ferroptosis Regulator Glutathione Peroxidase 4. Journal of Medicinal Chemistry. PMID 29688708 DOI: 10.1021/Acs.Jmedchem.8B00315 |
0.308 |
|
| 2018 |
Deng X, Zhang X, Tang B, Liu H, Shen Q, Liu Y, Lai L. Design, Synthesis, and Evaluation of Dihydrobenzo[]indole-6-sulfonamide as TNF-α Inhibitors. Frontiers in Chemistry. 6: 98. PMID 29670876 DOI: 10.3389/Fchem.2018.00098 |
0.311 |
|
| 2017 |
Liu Y, Liu D, Yang W, Wu XL, Lai L, Zhang WB. Tuning SpyTag-SpyCatcher mutant pairs toward orthogonal reactivity encryption. Chemical Science. 8: 6577-6582. PMID 28989685 DOI: 10.1039/C7Sc02686B |
0.364 |
|
| 2017 |
Sun T, Zhou B, Lai L, Pei J. Sequence-based prediction of protein protein interaction using a deep-learning algorithm. Bmc Bioinformatics. 18: 277. PMID 28545462 DOI: 10.1186/S12859-017-1700-2 |
0.32 |
|
| 2017 |
Zhang W, Pei J, Lai L. Statistical Analysis and Prediction of Covalent Ligand Targeted Cysteine Residues. Journal of Chemical Information and Modeling. PMID 28510428 DOI: 10.1021/Acs.Jcim.7B00163 |
0.36 |
|
| 2017 |
Wang X, Shen Y, Wang S, Li S, Zhang W, Liu X, Lai L, Pei J, Li H. PharmMapper 2017 update: a web server for potential drug target identification with a comprehensive target pharmacophore database. Nucleic Acids Research. PMID 28472422 DOI: 10.1093/Nar/Gkx374 |
0.32 |
|
| 2016 |
Wang Q, Liberti MV, Liu P, Deng X, Liu Y, Locasale JW, Lai L. Rational Design of Selective Allosteric Inhibitors of PHGDH and Serine Synthesis with Anti-tumor Activity. Cell Chemical Biology. PMID 28042046 DOI: 10.1016/J.Chembiol.2016.11.013 |
0.559 |
|
| 2016 |
Yang W, Lai L. Computational design of ligand-binding proteins. Current Opinion in Structural Biology. 45: 67-73. PMID 27951448 DOI: 10.1016/J.Sbi.2016.11.021 |
0.411 |
|
| 2016 |
Liang H, Ruan H, Ouyang Q, Lai L. Herb-target interaction network analysis helps to disclose molecular mechanism of traditional Chinese medicine. Scientific Reports. 6: 36767. PMID 27833111 DOI: 10.1038/Srep36767 |
0.306 |
|
| 2016 |
Dai Z, Shestov AA, Lai L, Locasale JW. A Flux Balance of Glucose Metabolism Clarifies the Requirements of the Warburg Effect. Biophysical Journal. 111: 1088-1100. PMID 27602736 DOI: 10.1016/J.Bpj.2016.07.028 |
0.704 |
|
| 2016 |
Ma X, Meng H, Lai L. Motions of allosteric and orthosteric ligand binding sites in proteins are highly correlated. Journal of Chemical Information and Modeling. PMID 27580047 DOI: 10.1021/Acs.Jcim.6B00039 |
0.304 |
|
| 2016 |
Zhu C, Zhang C, Zhang T, Zhang X, Shen Q, Tang B, Liang H, Lai L. Rational Design of TNFα Binding Proteins Based on the De Novo Designed Protein DS119. Protein Science : a Publication of the Protein Society. PMID 27571536 DOI: 10.1002/Pro.3029 |
0.358 |
|
| 2016 |
Yun T, Qin T, Liu Y, Lai L. Discovery of Non-ATP-Competitive Inhibitors of Polo-like Kinase 1. Chemmedchem. 11: 713-7. PMID 27061239 DOI: 10.1002/Cmdc.201600051 |
0.315 |
|
| 2016 |
Yu C, Niu X, Jin F, Liu Z, Jin C, Lai L. Structure-based Inhibitor Design for the Intrinsically Disordered Protein c-Myc. Scientific Reports. 6: 22298. PMID 26931396 DOI: 10.1038/Srep22298 |
0.354 |
|
| 2016 |
Li C, Teng X, Qi Y, Tang B, Shi H, Ma X, Lai L. Conformational Flexibility of a Short Loop near the Active Site of the SARS-3CLpro is Essential to Maintain Catalytic Activity. Scientific Reports. 6: 20918. PMID 26879383 DOI: 10.1038/Srep20918 |
0.301 |
|
| 2015 |
Xu Y, Dai Z, Chen F, Gao S, Pei J, Lai L. Deep Learning for Drug-Induced Liver Injury. Journal of Chemical Information and Modeling. PMID 26437739 DOI: 10.1021/Acs.Jcim.5B00238 |
0.651 |
|
| 2015 |
Yang W, Luo C, Lai L, Ouyang Q. A novel microfluidic platform for studying mammalian cell chemotaxis in different oxygen environments under zero-flow conditions. Biomicrofluidics. 9: 044121. PMID 26339320 DOI: 10.1063/1.4929406 |
0.306 |
|
| 2015 |
Meng H, McClendon CL, Dai Z, Li K, Zhang X, He S, Shang E, Liu Y, Lai L. Discovery of Novel 15-Lipoxygenase Activators To Shift the Human Arachidonic Acid Metabolic Network toward Inflammation Resolution. Journal of Medicinal Chemistry. PMID 26290290 DOI: 10.1021/Acs.Jmedchem.5B01011 |
0.665 |
|
| 2015 |
Meng H, Liu Y, Lai L. Diverse ways of perturbing the human arachidonic acid metabolic network to control inflammation. Accounts of Chemical Research. 48: 2242-50. PMID 26237215 DOI: 10.1021/Acs.Accounts.5B00226 |
0.308 |
|
| 2015 |
Wu Y, Zhuo X, Dai Z, Guo X, Wang Y, Zhang C, Lai L. Modeling the mitotic regulatory network identifies highly efficient anti-cancer drug combinations. Molecular Biosystems. 11: 497-505. PMID 25418836 DOI: 10.1039/C4Mb00610K |
0.656 |
|
| 2015 |
Ma X, Qi Y, Lai L. Allosteric sites can be identified based on the residue-residue interaction energy difference. Proteins. 83: 1375-84. PMID 25185787 DOI: 10.1002/Prot.24681 |
0.346 |
|
| 2014 |
Shen Q, Chen J, Wang Q, Deng X, Liu Y, Lai L. Discovery of highly potent TNFα inhibitors using virtual screen. European Journal of Medicinal Chemistry. 85: 119-26. PMID 25078315 DOI: 10.1016/J.Ejmech.2014.07.091 |
0.312 |
|
| 2014 |
Wang X, Chen H, Yang F, Gong J, Li S, Pei J, Liu X, Jiang H, Lai L, Li H. iDrug: a web-accessible and interactive drug discovery and design platform. Journal of Cheminformatics. 6: 28. PMID 24955134 DOI: 10.1186/1758-2946-6-28 |
0.31 |
|
| 2014 |
Zhang C, Tang B, Wang Q, Lai L. Discovery of binding proteins for a protein target using protein-protein docking-based virtual screening. Proteins. 82: 2472-82. PMID 24854898 DOI: 10.1002/Prot.24611 |
0.366 |
|
| 2014 |
Wang Q, Qi Y, Yin N, Lai L. Discovery of novel allosteric effectors based on the predicted allosteric sites for Escherichia coli D-3-phosphoglycerate dehydrogenase. Plos One. 9: e94829. PMID 24733054 DOI: 10.1371/Journal.Pone.0094829 |
0.321 |
|
| 2014 |
Dai Z, Lai L. Differential simulated annealing: a robust and efficient global optimization algorithm for parameter estimation of biological networks. Molecular Biosystems. 10: 1385-92. PMID 24714701 DOI: 10.1039/C4Mb00100A |
0.646 |
|
| 2014 |
Shang E, Liu Y, Wu Y, Zhu W, He C, Lai L. Development of 3,5-dinitrobenzoate-based 5-lipoxygenase inhibitors. Bioorganic & Medicinal Chemistry. 22: 2396-402. PMID 24685113 DOI: 10.1016/J.Bmc.2014.03.008 |
0.313 |
|
| 2014 |
Shang E, Yuan Y, Chen X, Liu Y, Pei J, Lai L. De novo design of multitarget ligands with an iterative fragment-growing strategy. Journal of Chemical Information and Modeling. 54: 1235-41. PMID 24611712 DOI: 10.1021/Ci500021V |
0.336 |
|
| 2014 |
Zhou L, Bosscher M, Zhang C, Ozçubukçu S, Zhang L, Zhang W, Li CJ, Liu J, Jensen MP, Lai L, He C. A protein engineered to bind uranyl selectively and with femtomolar affinity. Nature Chemistry. 6: 236-41. PMID 24557139 DOI: 10.1038/Nchem.1856 |
0.32 |
|
| 2014 |
Chen J, Ma X, Yuan Y, Pei J, Lai L. Protein-protein interface analysis and hot spots identification for chemical ligand design. Current Pharmaceutical Design. 20: 1192-200. PMID 23713772 DOI: 10.2174/13816128113199990065 |
0.38 |
|
| 2013 |
Zhu C, Dai Z, Liang H, Zhang T, Gai F, Lai L. Slow and bimolecular folding of a de novo designed monomeric protein DS119. Biophysical Journal. 105: 2141-8. PMID 24209859 DOI: 10.1016/J.Bpj.2013.09.014 |
0.684 |
|
| 2013 |
Jin F, Yu C, Lai L, Liu Z. Ligand clouds around protein clouds: a scenario of ligand binding with intrinsically disordered proteins. Plos Computational Biology. 9: e1003249. PMID 24098099 DOI: 10.1371/Journal.Pcbi.1003249 |
0.347 |
|
| 2013 |
Bi S, Yu D, Si G, Luo C, Li T, Ouyang Q, Jakovljevic V, Sourjik V, Tu Y, Lai L. Discovery of novel chemoeffectors and rational design of Escherichia coli chemoreceptor specificity. Proceedings of the National Academy of Sciences of the United States of America. 110: 16814-9. PMID 24082101 DOI: 10.1073/Pnas.1306811110 |
0.306 |
|
| 2013 |
Zhang C, Shen Q, Tang B, Lai L. Computational design of helical peptides targeting TNFα. Angewandte Chemie (International Ed. in English). 52: 11059-62. PMID 24038781 DOI: 10.1002/Anie.201305963 |
0.321 |
|
| 2013 |
He S, Li C, Liu Y, Lai L. Discovery of highly potent microsomal prostaglandin e2 synthase 1 inhibitors using the active conformation structural model and virtual screen. Journal of Medicinal Chemistry. 56: 3296-309. PMID 23527738 DOI: 10.1021/Jm301900X |
0.327 |
|
| 2013 |
Yin N, Pei J, Lai L. A comprehensive analysis of the influence of drug binding kinetics on drug action at molecular and systems levels. Molecular Biosystems. 9: 1381-9. PMID 23478789 DOI: 10.1039/C3Mb25471B |
0.311 |
|
| 2013 |
Yuan Y, Pei J, Lai L. Binding site detection and druggability prediction of protein targets for structure-based drug design. Current Pharmaceutical Design. 19: 2326-33. PMID 23082974 DOI: 10.2174/1381612811319120019 |
0.346 |
|
| 2012 |
Qi Y, Wang Q, Tang B, Lai L. Identifying Allosteric Binding Sites in Proteins with a Two-State Go̅ Model for Novel Allosteric Effector Discovery. Journal of Chemical Theory and Computation. 8: 2962-71. PMID 26592133 DOI: 10.1021/Ct300395H |
0.354 |
|
| 2012 |
Wu Y, He C, Gao Y, He S, Liu Y, Lai L. Dynamic modeling of human 5-lipoxygenase-inhibitor interactions helps to discover novel inhibitors. Journal of Medicinal Chemistry. 55: 2597-605. PMID 22380511 DOI: 10.1021/Jm201497K |
0.394 |
|
| 2012 |
Zhang C, Lai L. AutoMatch: target-binding protein design and enzyme design by automatic pinpointing potential active sites in available protein scaffolds. Proteins. 80: 1078-94. PMID 22228475 DOI: 10.1002/Prot.24009 |
0.364 |
|
| 2012 |
Qian M, Huang Q, Wu G, Lai L, Tang Y, Pei J, Kusunoki M. Crystal structure analysis of a recombinant predicted acetamidase/formamidase from the thermophile Thermoanaerobacter tengcongensis. The Protein Journal. 31: 166-74. PMID 22207484 DOI: 10.1007/S10930-011-9387-0 |
0.723 |
|
| 2011 |
Zhu C, Zhang C, Liang H, Lai L. Engineering a zinc binding site into the de novo designed protein DS119 with a βαβ structure. Protein & Cell. 2: 1006-13. PMID 22231358 DOI: 10.1007/S13238-011-1121-3 |
0.338 |
|
| 2011 |
He S, Lai L. Molecular docking and competitive binding study discovered different binding modes of microsomal prostaglandin E synthase-1 inhibitors. Journal of Chemical Information and Modeling. 51: 3254-61. PMID 22077876 DOI: 10.1021/Ci200427K |
0.323 |
|
| 2011 |
Zhang C, Lai L. Towards structure-based protein drug design. Biochemical Society Transactions. 39: 1382-6, suppl 1 p fo. PMID 21936819 DOI: 10.1042/Bst0391382 |
0.376 |
|
| 2011 |
Deng NJ, Zhang P, Cieplak P, Lai L. Elucidating the energetics of entropically driven protein-ligand association: calculations of absolute binding free energy and entropy. The Journal of Physical Chemistry. B. 115: 11902-10. PMID 21899337 DOI: 10.1021/Jp204047B |
0.309 |
|
| 2011 |
He S, Wu Y, Yu D, Lai L. Microsomal prostaglandin E synthase-1 exhibits one-third-of-the-sites reactivity. The Biochemical Journal. 440: 13-21. PMID 21797823 DOI: 10.1042/Bj20110977 |
0.336 |
|
| 2011 |
Zhang C, Lai L. SDOCK: a global protein-protein docking program using stepwise force-field potentials. Journal of Computational Chemistry. 32: 2598-612. PMID 21618559 DOI: 10.1002/Jcc.21839 |
0.352 |
|
| 2011 |
Yuan Y, Pei J, Lai L. LigBuilder 2: a practical de novo drug design approach. Journal of Chemical Information and Modeling. 51: 1083-91. PMID 21513346 DOI: 10.1021/Ci100350U |
0.329 |
|
| 2011 |
Bai H, Yang K, Yu D, Zhang C, Chen F, Lai L. Predicting kinetic constants of protein-protein interactions based on structural properties. Proteins. 79: 720-34. PMID 21287608 DOI: 10.1002/Prot.22904 |
0.361 |
|
| 2010 |
Wei D, Zheng H, Su N, Deng M, Lai L. Binding energy landscape analysis helps to discriminate true hits from high-scoring decoys in virtual screening. Journal of Chemical Information and Modeling. 50: 1855-64. PMID 20968314 DOI: 10.1021/Ci900463U |
0.325 |
|
| 2010 |
Gao X, Wang J, Yu DQ, Bian F, Xie BB, Chen XL, Zhou BC, Lai LH, Wang ZX, Wu JW, Zhang YZ. Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family. Proceedings of the National Academy of Sciences of the United States of America. 107: 17569-74. PMID 20876133 DOI: 10.1073/Pnas.1005681107 |
0.313 |
|
| 2010 |
Li C, Qi Y, Teng X, Yang Z, Wei P, Zhang C, Tan L, Zhou L, Liu Y, Lai L. Maturation mechanism of severe acute respiratory syndrome (SARS) coronavirus 3C-like proteinase. The Journal of Biological Chemistry. 285: 28134-40. PMID 20489209 DOI: 10.1074/Jbc.M109.095851 |
0.32 |
|
| 2010 |
Jiang X, Zhou L, Wu Y, Wei D, Sun C, Jia J, Liu Y, Lai L. Modulating the substrate specificity of LTA4H aminopeptidase by using chemical compounds and small-molecule-guided mutagenesis. Chembiochem : a European Journal of Chemical Biology. 11: 1120-8. PMID 20432426 DOI: 10.1002/Cbic.200900788 |
0.301 |
|
| 2010 |
Qi Y, Huang Y, Liang H, Liu Z, Lai L. Folding simulations of a de novo designed protein with a betaalphabeta fold. Biophysical Journal. 98: 321-9. PMID 20338854 DOI: 10.1016/J.Bpj.2009.10.018 |
0.338 |
|
| 2009 |
Ni S, Yuan Y, Huang J, Mao X, Lv M, Zhu J, Shen X, Pei J, Lai L, Jiang H, Li J. Discovering potent small molecule inhibitors of cyclophilin A using de novo drug design approach. Journal of Medicinal Chemistry. 52: 5295-8. PMID 19691347 DOI: 10.1021/Jm9008295 |
0.304 |
|
| 2009 |
Zhu X, Lai L. A novel method for enzyme design. Journal of Computational Chemistry. 30: 256-67. PMID 18615422 DOI: 10.1002/Jcc.21050 |
0.361 |
|
| 2008 |
Wei D, Jiang X, Zhou L, Chen J, Chen Z, He C, Yang K, Liu Y, Pei J, Lai L. Discovery of multitarget inhibitors by combining molecular docking with common pharmacophore matching. Journal of Medicinal Chemistry. 51: 7882-8. PMID 19090779 DOI: 10.1021/Jm8010096 |
0.318 |
|
| 2008 |
Zhou L, Fang C, Wei P, Liu S, Liu Y, Lai L. Chemically induced dimerization of human nonpancreatic secretory phospholipase A2 by bis-indole derivatives. Journal of Medicinal Chemistry. 51: 3360-6. PMID 18522384 DOI: 10.1021/Jm7010707 |
0.333 |
|
| 2008 |
Quan L, Wei D, Jiang X, Liu Y, Li Z, Li N, Li K, Liu F, Lai L. Resurveying the Tris buffer solution: the specific interaction between tris(hydroxymethyl)aminomethane and lysozyme. Analytical Biochemistry. 378: 144-50. PMID 18448066 DOI: 10.1016/J.Ab.2008.04.006 |
0.307 |
|
| 2008 |
Bai H, Ma W, Liu S, Lai L. Dynamic property is a key determinant for protein-protein interactions. Proteins. 70: 1323-31. PMID 17876833 DOI: 10.1002/Prot.21625 |
0.334 |
|
| 2007 |
Cheng T, Zhao Y, Li X, Lin F, Xu Y, Zhang X, Li Y, Wang R, Lai L. Computation of octanol-water partition coefficients by guiding an additive model with knowledge. Journal of Chemical Information and Modeling. 47: 2140-8. PMID 17985865 DOI: 10.1021/Ci700257Y |
0.695 |
|
| 2007 |
Zhang Z, Chen H, Lai L. Identification of amyloid fibril-forming segments based on structure and residue-based statistical potential. Bioinformatics (Oxford, England). 23: 2218-25. PMID 17599928 DOI: 10.1093/Bioinformatics/Btm325 |
0.316 |
|
| 2007 |
Zhang Z, Chen H, Bai H, Lai L. Molecular dynamics simulations on the oligomer-formation process of the GNNQQNY peptide from yeast prion protein Sup35. Biophysical Journal. 93: 1484-92. PMID 17483185 DOI: 10.1529/Biophysj.106.100537 |
0.312 |
|
| 2007 |
Liu S, Liu S, Zhu X, Liang H, Cao A, Chang Z, Lai L. Nonnatural protein-protein interaction-pair design by key residues grafting. Proceedings of the National Academy of Sciences of the United States of America. 104: 5330-5. PMID 17372228 DOI: 10.1073/Pnas.0606198104 |
0.35 |
|
| 2007 |
Cheng J, Pei J, Lai L. A free-rotating and self-avoiding chain model for deriving statistical potentials based on protein structures. Biophysical Journal. 92: 3868-77. PMID 17351015 DOI: 10.1529/Biophysj.106.102152 |
0.337 |
|
| 2007 |
Duan MR, Nan J, Liang YH, Mao P, Lu L, Li L, Wei C, Lai L, Li Y, Su XD. DNA binding mechanism revealed by high resolution crystal structure of Arabidopsis thaliana WRKY1 protein. Nucleic Acids Research. 35: 1145-54. PMID 17264121 DOI: 10.1093/Nar/Gkm001 |
0.308 |
|
| 2007 |
Chen J, Lai L. Pocket v.2: further developments on receptor-based pharmacophore modeling. Journal of Chemical Information and Modeling. 46: 2684-91. PMID 17125208 DOI: 10.1021/Ci600246S |
0.358 |
|
| 2007 |
Han X, Liu Y, Liu Y, Lai L, Huang R, Wang Q. Binding Model and 3D-QSAR of 3-(2-Chloropyrid-5-ylmethylamino)-2-cyanoacrylates as PSII Electron Transport Inhibitor Chinese Journal of Chemistry. 25: 1135-1138. DOI: 10.1002/Cjoc.200790212 |
0.311 |
|
| 2006 |
Lai L, Han X, Chen H, Wei P, Huang C, Liu S, Fan K, Zhou L, Liu Z, Pei J, Liu Y. Quaternary structure, substrate selectivity and inhibitor design for SARS 3C-like proteinase. Current Pharmaceutical Design. 12: 4555-64. PMID 17168761 DOI: 10.2174/138161206779010396 |
0.357 |
|
| 2006 |
Kang X, Hu Y, Li Y, Guo X, Jiang X, Lai L, Xia B, Jin C. Structural, biochemical, and dynamic characterizations of the hRPB8 subunit of human RNA polymerases. The Journal of Biological Chemistry. 281: 18216-26. PMID 16632472 DOI: 10.1074/Jbc.M513241200 |
0.306 |
|
| 2006 |
Liu S, Li Q, Lai L. A combinatorial score to distinguish biological and nonbiological protein-protein interfaces. Proteins. 64: 68-78. PMID 16596649 DOI: 10.1002/Prot.20954 |
0.35 |
|
| 2006 |
Pei J, Wang Q, Liu Z, Li Q, Yang K, Lai L. PSI-DOCK: towards highly efficient and accurate flexible ligand docking. Proteins. 62: 934-46. PMID 16395666 DOI: 10.1002/Prot.20790 |
0.351 |
|
| 2006 |
Wei P, Fan K, Chen H, Ma L, Huang C, Tan L, Xi D, Li C, Liu Y, Cao A, Lai L. The N-terminal octapeptide acts as a dimerization inhibitor of SARS coronavirus 3C-like proteinase. Biochemical and Biophysical Research Communications. 339: 865-72. PMID 16329994 DOI: 10.1016/J.Bbrc.2005.11.102 |
0.332 |
|
| 2006 |
Zhu YQ, Pei JF, Liu ZM, Lai LH, Cui JR, Li RT. 3D-QSAR studies on tripeptide aldehyde inhibitors of proteasome using CoMFA and CoMSIA methods. Bioorganic & Medicinal Chemistry. 14: 1483-96. PMID 16256351 DOI: 10.1016/J.Bmc.2005.10.003 |
0.33 |
|
| 2006 |
Pei J, Wang Q, Zhou J, Lai L. Estimating protein-ligand binding free energy: atomic solvation parameters for partition coefficient and solvation free energy calculation. Proteins. 57: 651-64. PMID 15390269 DOI: 10.1002/Prot.20198 |
0.361 |
|
| 2005 |
Liu S, Wu G, Huang Q, Lai L, Tang Y, Unno H, Kusunoki M. Expression, purification, crystallization and preliminary crystallographic study of a potential metal-dependent hydrolase with cyclase activity from Thermoanaerobacter tengcongensis. Acta Crystallographica. Section F, Structural Biology and Crystallization Communications. 61: 90-2. PMID 16508100 DOI: 10.1107/S1744309104029392 |
0.71 |
|
| 2005 |
Ding L, Zhang XX, Wei P, Fan K, Lai L. The interaction between severe acute respiratory syndrome coronavirus 3C-like proteinase and a dimeric inhibitor by capillary electrophoresis. Analytical Biochemistry. 343: 159-65. PMID 15935325 DOI: 10.1016/J.Ab.2005.04.027 |
0.302 |
|
| 2005 |
Fan K, Ma L, Han X, Liang H, Wei P, Liu Y, Lai L. The substrate specificity of SARS coronavirus 3C-like proteinase. Biochemical and Biophysical Research Communications. 329: 934-40. PMID 15752746 DOI: 10.1016/J.Bbrc.2005.02.061 |
0.339 |
|
| 2005 |
Liu Z, Huang C, Fan K, Wei P, Chen H, Liu S, Pei J, Shi L, Li B, Yang K, Liu Y, Lai L. Virtual screening of novel noncovalent inhibitors for SARS-CoV 3C-like proteinase. Journal of Chemical Information and Modeling. 45: 10-17. PMID 15667124 DOI: 10.1021/Ci049809B |
0.335 |
|
| 2004 |
Gao Y, Wang R, Lai L. Structure-based method for analyzing protein-protein interfaces. Journal of Molecular Modeling. 10: 44-54. PMID 14634848 DOI: 10.1007/S00894-003-0168-3 |
0.714 |
|
| 2004 |
Fan K, Wei P, Feng Q, Chen S, Huang C, Ma L, Lai B, Pei J, Liu Y, Chen J, Lai L. Biosynthesis, purification, and substrate specificity of severe acute respiratory syndrome coronavirus 3C-like proteinase. The Journal of Biological Chemistry. 279: 1637-42. PMID 14561748 DOI: 10.1074/Jbc.M310875200 |
0.331 |
|
| 2003 |
Kim R, Lai L, Lee HH, Cheong GW, Kim KK, Wu Z, Yokota H, Marqusee S, Kim SH. On the mechanism of chaperone activity of the small heat-shock protein of Methanococcus jannaschii. Proceedings of the National Academy of Sciences of the United States of America. 100: 8151-5. PMID 12817080 DOI: 10.1073/Pnas.1032940100 |
0.337 |
|
| 2003 |
Liu Z, Jiang L, Gao Y, Liang S, Chen H, Han Y, Lai L. Beyond the rotamer library: genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains. Proteins. 50: 49-62. PMID 12471599 DOI: 10.1002/Prot.10253 |
0.479 |
|
| 2003 |
Fu X, Wang Y, Huang L, Sha Y, Gui L, Lai L, Tang Y. Assemblies of Metal Nanoparticles and Self-Assembled Peptide Fibrils—Formation of Double Helical and Single-Chain Arrays of Metal Nanoparticles Advanced Materials. 15: 902-906. DOI: 10.1002/Adma.200304624 |
0.692 |
|
| 2002 |
Wang R, Lai L, Wang S. Further development and validation of empirical scoring functions for structure-based binding affinity prediction. Journal of Computer-Aided Molecular Design. 16: 11-26. PMID 12197663 DOI: 10.1023/A:1016357811882 |
0.708 |
|
| 2002 |
Jiang L, Lai L. CH...O hydrogen bonds at protein-protein interfaces. The Journal of Biological Chemistry. 277: 37732-40. PMID 12119293 DOI: 10.1074/Jbc.M204514200 |
0.416 |
|
| 2002 |
Zou XJ, Lai LH, Jin GY, Zhang ZX. Synthesis, fungicidal activity, and 3D-QSAR of pyridazinone-substituted 1,3,4-oxadiazoles and 1,3,4-thiadiazoles. Journal of Agricultural and Food Chemistry. 50: 3757-60. PMID 12059155 DOI: 10.1021/Jf0201677 |
0.301 |
|
| 2002 |
Cao A, Wang G, Tang Y, Lai L. Linear correlation between thermal stability and folding kinetics of lysozyme. Biochemical and Biophysical Research Communications. 291: 795-7. PMID 11866435 DOI: 10.1006/Bbrc.2002.6526 |
0.695 |
|
| 2002 |
Jiang L, Gao Y, Mao F, Liu Z, Lai L. Potential of mean force for protein-protein interaction studies. Proteins. 46: 190-6. PMID 11807947 DOI: 10.1002/Prot.10031 |
0.463 |
|
| 2001 |
Liu Y, Feng Y, Wang R, Gao Y, Lai L. Quinoline-4-acetamides as sPLA2 inhibitors Bioorganic & Medicinal Chemistry Letters. 11: 1639-1641. PMID 11425526 DOI: 10.1016/S0960-894X(01)00229-3 |
0.695 |
|
| 2001 |
Tao P, Lai L. Protein ligand docking based on empirical method for binding affinity estimation Journal of Computer-Aided Molecular Design. 15: 429-446. PMID 11394737 DOI: 10.1023/A:1011188704521 |
0.372 |
|
| 2001 |
Liu Z, Li W, Zhang H, Han Y, Lai L. Modeling the third loop of short-chain snake venom neurotoxins: roles of the short-range and long-range interactions. Proteins. 42: 6-16. PMID 11093256 DOI: 10.1002/1097-0134(20010101)42:1<6::Aid-Prot20>3.0.Co;2-7 |
0.335 |
|
| 2000 |
Liang S, Liu Z, Li W, Ni L, Lai L. Construction of protein binding sites in scaffold structures. Biopolymers. 54: 515-523. PMID 10984403 DOI: 10.1002/1097-0282(200012)54:7<515::Aid-Bip40>3.0.Co;2-0 |
0.356 |
|
| 2000 |
Liang S, Li W, Xiao L, Wang J, Lai L. Grafting of protein-protein interaction epitope. Journal of Biomolecular Structure & Dynamics. 17: 821-828. PMID 10798527 DOI: 10.1080/07391102.2000.10506571 |
0.351 |
|
| 2000 |
Wang J, Lai L, Tang Y. Structural features of toxic chemicals for specific toxicity. Journal of Chemical Information and Computer Sciences. 39: 1173-89. PMID 10614029 DOI: 10.1021/Ci990039R |
0.732 |
|
| 2000 |
Wang R, Gao Y, Lai L. Perspectives in Drug Discovery and Design. 19: 47-66. DOI: 10.1023/A:1008763405023 |
0.674 |
|
| 2000 |
Wang R, Gao Y, Lai L. LigBuilder: A Multi-Purpose Program for Structure-Based Drug Design Journal of Molecular Modeling. 6: 498-516. DOI: 10.1007/S0089400060498 |
0.718 |
|
| 2000 |
Liu Z, Mao F, Li W, Han Y, Lai L. Calculation of Protein Surface Loops Using Monte-Carlo Simulated Annealing Simulation Journal of Molecular Modeling. 6: 1-8. DOI: 10.1007/Pl00010720 |
0.305 |
|
| 2000 |
Liang S, Xiao L, Mao F, Jiang L, Han Y, Lai L. Grafting of protein-protein binding sites Chinese Science Bulletin. 45: 1707-1712. DOI: 10.1007/Bf02898992 |
0.465 |
|
| 2000 |
Wang J, Lai L, Tang Y. Predictive toxicology of chemicals and database mining Chinese Science Bulletin. 45: 1093-1097. DOI: 10.1007/Bf02887181 |
0.735 |
|
| 1999 |
Li W, Liang S, Wang R, Lai L, Han Y. Exploring the conformational diversity of loops on conserved frameworks. Protein Engineering. 12: 1075-1086. PMID 10611401 DOI: 10.1093/Protein/12.12.1075 |
0.699 |
|
| 1999 |
Li W, Liu Z, Lai L. Protein loops on structurally similar scaffolds: database and conformational analysis. Biopolymers. 49: 481-95. PMID 10193195 DOI: 10.1002/(Sici)1097-0282(199905)49:6<481::Aid-Bip6>3.0.Co;2-V |
0.322 |
|
| 1999 |
Liu H, Sha Y, Tan H, Yang H, Lai L. Bio-rational design of photosystem II inhibitors (VIII)——Molecular design, synthesis and inhibitory activity of acrylates (acrylamides) Science China-Chemistry. 42: 326-331. DOI: 10.1360/Yb1999-42-3-326 |
0.35 |
|
| 1999 |
Wang J, Lai L, Tang Y. Data Mining of Toxic Chemicals: Structure Patterns and QSAR Journal of Molecular Modeling. 5: 252-262. DOI: 10.1007/S0089490050252 |
0.733 |
|
| 1999 |
Tao P, Wang R, Lai L. Calculating Partition Coefficients of Peptides by the Addition Method Journal of Molecular Modeling. 5: 189-195. DOI: 10.1007/S008940050118 |
0.68 |
|
| 1999 |
Li W, Liu Z, Liang S, Han Y, Lai L. Rational screenning in combinatorial peptide libraries of protein functional loop Chinese Science Bulletin. 44: 2150-2154. DOI: 10.1007/Bf03182698 |
0.355 |
|
| 1999 |
Liu H, Sha Y, Tan H, Yang H, Lai L. Bio-rational design of photosystem II inhibitors (VIII) Science China-Chemistry. 42: 326-331. DOI: 10.1007/Bf02874250 |
0.348 |
|
| 1998 |
Wang R, Liu L, Lai L, Tang Y. SCORE: A New Empirical Method for Estimating the Binding Affinity of a Protein-Ligand Complex Journal of Molecular Modeling. 4: 379-394. DOI: 10.1007/S008940050096 |
0.776 |
|
| 1998 |
Wang R, Gao Y, Liu L, Lai L. All-Orientation Search and All-Placement Search in Comparative Molecular Field Analysis Journal of Molecular Modeling. 4: 276-283. DOI: 10.1007/S008940050085 |
0.672 |
|
| 1998 |
Liu H, Sha Y, Lu R, Yang H, Lai L. Bio-rational design of photosystem II inhibitors (I) Chinese Science Bulletin. 43: 652-656. DOI: 10.1007/Bf02883568 |
0.313 |
|
| 1997 |
Luo Z, Wang R, Lai L. RASSE: a new method for structure-based drug design. Journal of Chemical Information and Computer Sciences. 36: 1187-94. PMID 8941995 DOI: 10.1021/Ci950277W |
0.715 |
|
| 1997 |
Wang R, Fu Y, Lai L. A New Atom-Additive Method for Calculating Partition Coefficients Journal of Chemical Information and Computer Sciences. 37: 615-621. DOI: 10.1021/Ci960169P |
0.683 |
|
| 1997 |
Zhang H, Lai L, Wang L, Han Y, Tang Y. A fast and efficient program for modeling protein loops Biopolymers. 41: 61-72. DOI: 10.1002/(Sici)1097-0282(199701)41:1<61::Aid-Bip6>3.0.Co;2-0 |
0.716 |
|
| 1996 |
Wang Y, Lai L, Li S, Han Y, Tang Y. Position-dependent protein mutant profile based on mean force field calculation. Protein Engineering. 9: 479-484. PMID 8862547 DOI: 10.1093/Protein/9.6.479 |
0.735 |
|
| 1996 |
Ma L, Tu G, Chen S, Zhang R, Lai L, Xu X, Tang Y. NMR determination of the structure of Julibroside J1 Carbohydrate Research. 281: 35-46. PMID 8839175 DOI: 10.1016/0008-6215(95)00344-4 |
0.702 |
|
| 1996 |
Zhang H, Yang Y, Lai L, Tang Y. Conformational analysis of two glycoproteins: a Monte Carlo simulated annealing approach using a soft-sphere potential Carbohydrate Research. 284: 25-34. PMID 8625357 DOI: 10.1016/0008-6215(96)00003-1 |
0.327 |
|
| 1995 |
Wang Y, Lai L, Han Y, Xu X, Tang Y. A new protein folding recognition potential function. Proteins. 21: 127-9. PMID 7777487 DOI: 10.1002/Prot.340210206 |
0.748 |
|
| 1993 |
Qu CX, Lai LH, Xu XJ, Tang YQ. Phyletic relationships of protein structures based on spatial preference of residues. Journal of Molecular Evolution. 36: 67-78. PMID 8381879 DOI: 10.1007/Bf02407306 |
0.742 |
|
| 1993 |
Luo Y, Lai L, Xu X, Tang Y. Defining topological equivalences in protein structures by means of a dynamic programming algorithm. Protein Engineering. 6: 373-6. PMID 8332594 DOI: 10.1093/Protein/6.4.373 |
0.741 |
|
| 1992 |
Luo Y, Jiang X, Lai L, Qu C, Xu X, Tang Y. Building protein backbones from C alpha coordinates. Protein Engineering. 5: 147-50. PMID 1594568 DOI: 10.1093/Protein/5.2.147 |
0.703 |
|
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