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Mert Gur - Publications

Affiliations: 
Istanbul Technical University, İstanbul, Turkey 
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27 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bahar I, Banerjee A, Mathew S, Naqvi M, Yilmaz S, Zachoropoulou M, Doruker P, Kumita J, Yang SH, Gur M, Itzhaki L, Gordon R. Influence of Point Mutations on PR65 Conformational Adaptability: Insights from Nanoaperture Optical Tweezer Experiments and Molecular Simulations. Research Square. PMID 38014259 DOI: 10.21203/rs.3.rs-3599809/v1  0.634
2022 Golcuk M, Hacisuleyman A, Yilmaz SZ, Taka E, Yildiz A, Gur M. SARS-CoV-2 Delta Variant Decreases Nanobody Binding and ACE2 Blocking Effectivity. Journal of Chemical Information and Modeling. PMID 35533364 DOI: 10.1021/acs.jcim.1c01523  0.741
2021 Golcuk M, Hacisuleyman A, Erman B, Yildiz A, Gur M. Binding Mechanism of Neutralizing Nanobodies Targeting SARS-CoV-2 Spike Glycoprotein. Journal of Chemical Information and Modeling. 61: 5152-5160. PMID 34581563 DOI: 10.1021/acs.jcim.1c00695  0.707
2020 Gur M, Taka E, Yilmaz SZ, Kilinc C, Aktas U, Golcuk M. Conformational transition of SARS-CoV-2 spike glycoprotein between its closed and open states. The Journal of Chemical Physics. 153: 075101. PMID 32828084 DOI: 10.1063/5.0011141  0.411
2020 Gur M, Golcuk M, Gul A, Erman B. Molecular dynamics simulations provide molecular insights into the role of HLA-B51 in Behçet's disease pathogenesis. Chemical Biology & Drug Design. 96: 644-658. PMID 32691964 DOI: 10.1111/Cbdd.13658  0.614
2019 Zhou Z, Feng Z, Hu D, Yang P, Gur M, Bahar I, Cristofanilli M, Gradishar WJ, Xie XQ, Wan Y. A novel small-molecule antagonizes PRMT5-mediated KLF4 methylation for targeted therapy. Ebiomedicine. PMID 31101597 DOI: 10.1016/J.Ebiom.2019.05.011  0.554
2019 Gur M, Golcuk M, Zeynep Yilmaz S, Taka E. Thermodynamic First Law Efficiency of Membrane Proteins. Journal of Biomolecular Structure & Dynamics. 1-20. PMID 30727820 DOI: 10.1080/07391102.2019.1577759  0.337
2019 Pullara F, Wenzhi M, Gür M. Why protein conformers in molecular dynamics simulations differ from their crystal structures: a thermodynamic insight Turkish Journal of Chemistry. 43: 394-403. DOI: 10.3906/Kim-1808-1  0.392
2018 Gur M, Blackburn EA, Ning J, Narayan V, Ball KL, Walkinshaw MD, Erman B. Molecular dynamics simulations of site point mutations in the TPR domain of cyclophilin 40 identify conformational states with distinct dynamic and enzymatic properties. The Journal of Chemical Physics. 148: 145101. PMID 29655319 DOI: 10.1063/1.5019457  0.677
2017 Gur M, Cheng MH, Zomot E, Bahar I. Effect of Dimerization on the Dynamics of Neurotransmitter: Sodium Symporters. The Journal of Physical Chemistry. B. PMID 28118712 DOI: 10.1021/Acs.Jpcb.6B09876  0.625
2017 Gur M, Cheng MH, Zomot E, Bahar I. Importance of Dimerization in Facilitating the Functional Dynamics of Neurotransmitter: Sodium Symporters Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.2736  0.592
2015 Gur M, Zomot E, Cheng MH, Bahar I. Energy landscape of LeuT from molecular simulations. The Journal of Chemical Physics. 143: 243134. PMID 26723619 DOI: 10.1063/1.4936133  0.656
2015 Hu D, Gur M, Zhou Z, Gamper A, Hung MC, Fujita N, Lan L, Bahar I, Wan Y. Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis. Nature Communications. 6: 8419. PMID 26420673 DOI: 10.1038/Ncomms9419  0.586
2015 Zomot E, Gur M, Bahar I. Microseconds simulations reveal a new sodium-binding site and the mechanism of sodium-coupled substrate uptake by LeuT. The Journal of Biological Chemistry. 290: 544-55. PMID 25381247 DOI: 10.1074/Jbc.M114.617555  0.637
2014 Das A, Gur M, Cheng MH, Jo S, Bahar I, Roux B. Exploring the conformational transitions of biomolecular systems using a simple two-state anisotropic network model. Plos Computational Biology. 10: e1003521. PMID 24699246 DOI: 10.1371/Journal.Pcbi.1003521  0.632
2013 Gur M, Madura JD, Bahar I. Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase. Biophysical Journal. 105: 1643-52. PMID 24094405 DOI: 10.1016/J.Bpj.2013.07.058  0.662
2013 Gur M, Zomot E, Bahar I. Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions. The Journal of Chemical Physics. 139: 121912. PMID 24089724 DOI: 10.1063/1.4816375  0.673
2013 Eskici G, Gur M. Computational design of new Peptide inhibitors for amyloid Beta (aβ) aggregation in Alzheimer's disease: application of a novel methodology. Plos One. 8: e66178. PMID 23762479 DOI: 10.1371/Journal.Pone.0066178  0.332
2013 Das A, Gur M, Bahar I, Roux B. A Simple Coarse-Grained Model to Map the Transition Pathway Between Two Stable Conformations using the Anisotropic Elastic Network Model Biophysical Journal. 104: 35a-36a. DOI: 10.1016/J.Bpj.2012.11.235  0.633
2013 Gur M, Madura J, Bahar I. Global Transitions or Proteins Explored by a Multiscale Hybrid Methodology: Application to Dopamine Transporter Biophysical Journal. 104: 226a-227a. DOI: 10.1016/J.Bpj.2012.11.1279  0.678
2012 Gur M, Erman B. Quasi-harmonic fluctuations of two bound peptides. Proteins. 80: 2769-79. PMID 22890690 DOI: 10.1002/Prot.24160  0.687
2012 Arkun Y, Gur M. Combining optimal control theory and molecular dynamics for protein folding. Plos One. 7: e29628. PMID 22238629 DOI: 10.1371/Journal.Pone.0029628  0.358
2012 Gur M, Madura J, Bahar I. Transition Pathways of Proteins Explored by Combining Molecular Dynamics Simulations and Monte Carlo Sampling of Collective Modes Biophysical Journal. 102: 450a. DOI: 10.1016/J.Bpj.2011.11.2467  0.674
2011 Meireles L, Gur M, Bakan A, Bahar I. Pre-existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins. Protein Science : a Publication of the Protein Society. 20: 1645-58. PMID 21826755 DOI: 10.1002/Pro.711  0.7
2011 Arkun Y, Gür M. Protein Folding Using Coarse-Grained Optimal Control and Molecular Dynamics Ifac Proceedings Volumes. 44: 14213-14216. DOI: 10.3182/20110828-6-It-1002.02489  0.337
2010 Gur M, Erman B. Quasi-harmonic analysis of mode coupling in fluctuating native proteins. Physical Biology. 7: 046006. PMID 20978315 DOI: 10.1088/1478-3975/7/4/046006  0.645
2009 Yogurtcu ON, Gur M, Erman B. Statistical thermodynamics of residue fluctuations in native proteins. The Journal of Chemical Physics. 130: 095103. PMID 19275429 DOI: 10.1063/1.3078517  0.663
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