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Michael A DeJesus, Ph.D. - Publications

Affiliations: 
Computer Science Texas A & M University, College Station, TX, United States 
Area:
Bioinformatics
Website:
www.mad-lab.org
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22 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Choudhery S, DeJesus MA, Srinivasan A, Rock J, Schnappinger D, Ioerger TR. A dose-response based model for statistical analysis of chemical genetic interactions in CRISPRi libraries. Biorxiv : the Preprint Server For Biology. PMID 37577548 DOI: 10.1101/2023.08.03.551759  0.567
2023 Poulton NC, DeJesus MA, Munsamy-Govender V, Roberts CG, Azadian ZA, Bosch B, Lin KM, Li S, Rock JM. Beyond antibiotic resistance: the transcription factor coordinates an adaptive response to alanine starvation in mycobacteria. Biorxiv : the Preprint Server For Biology. PMID 37333137 DOI: 10.1101/2023.06.02.543512  0.304
2021 Dutta E, DeJesus MA, Ruecker N, Zaveri A, Koh EI, Sassetti CM, Schnappinger D, Ioerger TR. An improved statistical method to identify chemical-genetic interactions by exploiting concentration-dependence. Plos One. 16: e0257911. PMID 34597304 DOI: 10.1371/journal.pone.0257911  0.617
2021 Bosch B, DeJesus MA, Poulton NC, Zhang W, Engelhart CA, Zaveri A, Lavalette S, Ruecker N, Trujillo C, Wallach JB, Li S, Ehrt S, Chait BT, Schnappinger D, Rock JM. Genome-wide gene expression tuning reveals diverse vulnerabilities of M. tuberculosis. Cell. PMID 34297925 DOI: 10.1016/j.cell.2021.06.033  0.439
2019 Subramaniyam S, DeJesus MA, Zaveri A, Smith CM, Baker RE, Ehrt S, Schnappinger D, Sassetti CM, Ioerger TR. Statistical analysis of variability in TnSeq data across conditions using zero-inflated negative binomial regression. Bmc Bioinformatics. 20: 603. PMID 31752678 DOI: 10.1186/S12859-019-3156-Z  0.622
2017 Xu W, DeJesus MA, Rücker N, Engelhart CA, Wright MG, Healy C, Lin K, Wang R, Park SW, Ioerger TR, Schnappinger D, Ehrt S. Chemical genomic interaction profiling reveals determinants of intrinsic antibiotic resistance in Mycobacterium tuberculosis. Antimicrobial Agents and Chemotherapy. PMID 28893793 DOI: 10.1128/Aac.01334-17  0.603
2017 DeJesus MA, Nambi S, Smith CM, Baker RE, Sassetti CM, Ioerger TR. Statistical analysis of genetic interactions in Tn-Seq data. Nucleic Acids Research. PMID 28334803 DOI: 10.1093/Nar/Gkx128  0.626
2017 DeJesus MA, Gerrick ER, Xu W, Park SW, Long JE, Boutte CC, Rubin EJ, Schnappinger D, Ehrt S, Fortune SM, Sassetti CM, Ioerger TR. Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis. Mbio. 8. PMID 28096490 DOI: 10.1128/Mbio.02133-16  0.628
2017 Maxwell S, Wallis D, Zhou N, Baker D, Mousavi-Fard S, Loesch K, Galaviz S, Sun Q, Threadgill D, Rojas C, O'Brien M, Clubb F, Ioerger T, DeJesus M, Dong W, et al. DEVELOPMENT OF NOVEL, NON-TOXIC RIFAMYCINS THAT REVERSE DRUG RESISTANCE IN DIFFUSE LARGE B-CELL LYMPHOMA (DLBCL) Hematological Oncology. 35: 253-254. DOI: 10.1002/hon.2438_118  0.448
2016 Korte J, Alber M, Trujillo CM, Syson K, Koliwer-Brandl H, Deenen R, Köhrer K, DeJesus MA, Hartman T, Jacobs WR, Bornemann S, Ioerger TR, Ehrt S, Kalscheuer R. Trehalose-6-Phosphate-Mediated Toxicity Determines Essentiality of OtsB2 in Mycobacterium tuberculosis In Vitro and in Mice. Plos Pathogens. 12: e1006043. PMID 27936238 DOI: 10.1371/Journal.Ppat.1006043  0.61
2016 Orsini CA, Setlow B, DeJesus M, Galaviz S, Loesch K, Ioerger T, Wallis D. Behavioral and transcriptomic profiling of mice null for Lphn3, a gene implicated in ADHD and addiction. Molecular Genetics & Genomic Medicine. 4: 322-43. PMID 27247960 DOI: 10.1002/Mgg3.207  0.521
2016 DeJesus MA, Ioerger TR. Normalization of transposon-mutant library sequencing datasets to improve identification of conditionally essential genes. Journal of Bioinformatics and Computational Biology. 1642004. PMID 26932272 DOI: 10.1142/S021972001642004X  0.641
2015 DeJesus MA, Ambadipudi C, Baker R, Sassetti C, Ioerger TR. TRANSIT - A Software Tool for Himar1 TnSeq Analysis. Plos Computational Biology. 11: e1004401. PMID 26447887 DOI: 10.1371/Journal.Pcbi.1004401  0.593
2015 DeJesus MA, Ioerger TR. Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 12: 92-102. PMID 26357081 DOI: 10.1109/Tcbb.2014.2326857  0.668
2015 Loesch K, Galaviz S, Hamoui Z, Clanton R, Akabani G, Deveau M, DeJesus M, Ioerger T, Sacchettini JC, Wallis D. Functional genomics screening utilizing mutant mouse embryonic stem cells identifies novel radiation-response genes. Plos One. 10: e0120534. PMID 25853515 DOI: 10.1371/Journal.Pone.0120534  0.593
2015 Wallis D, Loesch K, Galaviz S, Sun Q, DeJesus M, Ioerger T, Sacchettini JC. High-Throughput Differentiation and Screening of a Library of Mutant Stem Cell Clones Defines New Host-Based Genes Involved in Rabies Virus Infection. Stem Cells (Dayton, Ohio). 33: 2509-22. PMID 25752821 DOI: 10.1002/Stem.1983  0.586
2015 Long JE, DeJesus M, Ward D, Baker RE, Ioerger T, Sassetti CM. Identifying essential genes in Mycobacterium tuberculosis by global phenotypic profiling. Methods in Molecular Biology (Clifton, N.J.). 1279: 79-95. PMID 25636614 DOI: 10.1007/978-1-4939-2398-4_6  0.638
2013 DeJesus MA, Ioerger TR. A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data. Bmc Bioinformatics. 14: 303. PMID 24103077 DOI: 10.1186/1471-2105-14-303  0.66
2013 DeJesus MA, Zhang YJ, Sassetti CM, Rubin EJ, Sacchettini JC, Ioerger TR. Bayesian analysis of gene essentiality based on sequencing of transposon insertion libraries. Bioinformatics (Oxford, England). 29: 695-703. PMID 23361328 DOI: 10.1093/Bioinformatics/Btt043  0.644
2013 DeJesus MA, Sacchettini JC, Ioerger TR. Reannotation of translational start sites in the genome of Mycobacterium tuberculosis. Tuberculosis (Edinburgh, Scotland). 93: 18-25. PMID 23273318 DOI: 10.1016/J.Tube.2012.11.012  0.602
2013 Dejesus MA, Ioerger TR. Improving discrimination of essential genes by modeling local insertion frequencies in transposon mutagenesis data 2013 Acm Conference On Bioinformatics, Computational Biology and Biomedical Informatics, Acm-Bcb 2013. 144-151. DOI: 10.1145/2506583.2506610  0.635
2011 Griffin JE, Gawronski JD, Dejesus MA, Ioerger TR, Akerley BJ, Sassetti CM. High-resolution phenotypic profiling defines genes essential for mycobacterial growth and cholesterol catabolism. Plos Pathogens. 7: e1002251. PMID 21980284 DOI: 10.1371/Journal.Ppat.1002251  0.661
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