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Gary P. Schroth, Ph.D. - Publications

Affiliations: 
Illumina, San Diego, CA, United States 
Area:
Next-Generation DNA Sequencing
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53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Khanna A, Bruinsma S, Burgess J, Czyz A, Morrell N, Schlingman D, Ballenger K, Meinholz H, Freeberg L, Grunenwald H, Gormley N, Bhattacharjee G, Schroth GP. Bead-Linked Transposome Technology: Ushers a Next Era in Library Prep Enabling a Normalization-Free Workflow for Whole Genome and Flexible Targeted Resequencing. Journal of Biomolecular Techniques : Jbt. 30: S7-S8. PMID 31892875  0.302
2018 Bruinsma S, Burgess J, Schlingman D, Czyz A, Morrell N, Ballenger C, Meinholz H, Brady L, Khanna A, Freeberg L, Jackson RG, Mathonet P, Verity SC, Slatter AF, Golshani R, ... ... Schroth GP, et al. Bead-linked transposomes enable a normalization-free workflow for NGS library preparation. Bmc Genomics. 19: 722. PMID 30285621 DOI: 10.1186/S12864-018-5096-9  0.361
2018 Yang Y, Walls SD, Gross SM, Schroth GP, Jarman RG, Hang J. Targeted Sequencing of Respiratory Viruses in Clinical Specimens for Pathogen Identification and Genome-Wide Analysis. Methods in Molecular Biology (Clifton, N.J.). 1838: 125-140. PMID 30128994 DOI: 10.1007/978-1-4939-8682-8_10  0.35
2016 Dinwiddie DL, Dehority WN, Schwalm KC, Young JM, Gross SM, Schroth GP, Young SA. Complete Genome Sequence of a Novel Human WU Polyomavirus Isolate Associated with Acute Respiratory Infection. Genome Announcements. 4. PMID 27151782 DOI: 10.1128/Genomea.00177-16  0.343
2016 Watson LC, Gross SM, Schlesinger F, Mai A, Kellogg M, Lee S, Attwooll C, Brenca M, Swanson D, Wong A, Tos APD, Haferlach C, Haferlach T, Kern W, Maestro R, ... ... Schroth GP, et al. Abstract LB-329: Enhancing the resolution and accelerating the pace of translational fusion characterization in oncology by RNA sequencing Cancer Research. 76. DOI: 10.1158/1538-7445.Am2016-Lb-329  0.312
2015 Ozer A, Tome JM, Friedman RC, Gheba D, Schroth GP, Lis JT. Quantitative assessment of RNA-protein interactions with high-throughput sequencing-RNA affinity profiling. Nature Protocols. 10: 1212-33. PMID 26182240 DOI: 10.1038/Nprot.2015.074  0.331
2015 Gölzenleuchter M, Kanwar R, Zaibak M, Al Saiegh F, Hartung T, Klukas J, Smalley RL, Cunningham JM, Figueroa ME, Schroth GP, Therneau TM, Banck MS, Beutler AS. Plasticity of DNA methylation in a nerve injury model of pain. Epigenetics. 10: 200-12. PMID 25621511 DOI: 10.1080/15592294.2015.1006493  0.33
2015 Peng X, Thierry-Mieg J, Thierry-Mieg D, Nishida A, Pipes L, Bozinoski M, Thomas MJ, Kelly S, Weiss JM, Raveendran M, Muzny D, Gibbs RA, Rogers J, Schroth GP, Katze MG, et al. Tissue-specific transcriptome sequencing analysis expands the non-human primate reference transcriptome resource (NHPRTR). Nucleic Acids Research. 43: D737-42. PMID 25392405 DOI: 10.1093/Nar/Gku1110  0.307
2015 Watson LC, Gross SM, Khrevtukova I, Pathak S, Attwooll C, Goode J, Mai A, Schroth GP. Abstract 4884: Highly sensitive fusion transcript detection and quantification in cancer Cancer Research. 75: 4884-4884. DOI: 10.1158/1538-7445.Am2015-4884  0.302
2014 Tome JM, Ozer A, Pagano JM, Gheba D, Schroth GP, Lis JT. Comprehensive analysis of RNA-protein interactions by high-throughput sequencing-RNA affinity profiling. Nature Methods. 11: 683-8. PMID 24809628 DOI: 10.1038/Nmeth.2970  0.354
2014 Looney TJ, Zhang L, Chen CH, Lee JH, Chari S, Mao FF, Pelizzola M, Zhang L, Lister R, Baker SW, Fernandes CJ, Gaetz J, Foshay KM, Clift KL, Zhang Z, ... ... Schroth GP, et al. Systematic mapping of occluded genes by cell fusion reveals prevalence and stability of cis-mediated silencing in somatic cells. Genome Research. 24: 267-80. PMID 24310002 DOI: 10.1101/Gr.143891.112  0.319
2014 Watson L, Pathak S, Gross S, Khrebtukova I, Schroth G. Abstract 3563: New tools for RNA-sequencing of FFPE tumor samples Cancer Research. 74: 3563-3563. DOI: 10.1158/1538-7445.Am2014-3563  0.307
2012 Akalin A, Garrett-Bakelman FE, Kormaksson M, Busuttil J, Zhang L, Khrebtukova I, Milne TA, Huang Y, Biswas D, Hess JL, Allis CD, Roeder RG, Valk PJ, Löwenberg B, Delwel R, ... ... Schroth GP, et al. Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia. Plos Genetics. 8: e1002781. PMID 22737091 DOI: 10.1371/Journal.Pgen.1002781  0.411
2012 Hartung T, Zhang L, Kanwar R, Khrebtukova I, Reinhardt M, Wang C, Therneau TM, Banck MS, Schroth GP, Beutler AS. Diametrically opposite methylome-transcriptome relationships in high-and low-CpG promoter genes in postmitotic neural rat tissue Epigenetics. 7: 421-428. PMID 22415013 DOI: 10.4161/Epi.19565  0.328
2010 Boellmann F, Zhang L, Clewell HJ, Schroth GP, Kenyon EM, Andersen ME, Thomas RS. Genome-wide analysis of DNA methylation and gene expression changes in the mouse lung following subchronic arsenate exposure Toxicological Sciences. 117: 404-417. PMID 20667999 DOI: 10.1093/Toxsci/Kfq225  0.332
2010 Baranzini SE, Mudge J, van Velkinburgh JC, Khankhanian P, Khrebtukova I, Miller NA, Zhang L, Farmer AD, Bell CJ, Kim RW, May GD, Woodward JE, Caillier SJ, McElroy JP, Gomez R, ... ... Schroth GP, et al. Genome, epigenome and RNA sequences of monozygotic twins discordant for multiple sclerosis. Nature. 464: 1351-6. PMID 20428171 DOI: 10.1038/Nature08990  0.312
2010 Filiatrault MJ, Stodghill PV, Bronstein PA, Moll S, Lindeberg M, Grills G, Schweitzer P, Wang W, Schroth GP, Luo S, Khrebtukova I, Yang Y, Thannhauser T, Butcher BG, Cartinhour S, et al. Transcriptome analysis of Pseudomonas syringae identifies new genes, noncoding RNAs, and antisense activity. Journal of Bacteriology. 192: 2359-72. PMID 20190049 DOI: 10.1128/Jb.01445-09  0.358
2010 Luo S, Khrebtukova I, Perou C, Schroth GP. Complete RNA-seq analysis of cancer transcriptomes from FFPE samples Genome Biology. 11: P35. DOI: 10.1186/Gb-2010-11-S1-P35  0.307
2009 Maher CA, Palanisamy N, Brenner JC, Cao X, Kalyana-Sundaram S, Luo S, Khrebtukova I, Barrette TR, Grasso C, Yu J, Lonigro RJ, Schroth G, Kumar-Sinha C, Chinnaiyan AM. Chimeric transcript discovery by paired-end transcriptome sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 12353-8. PMID 19592507 DOI: 10.1073/Pnas.0904720106  0.351
2009 German MA, Luo S, Schroth G, Meyers BC, Green PJ. Construction of Parallel Analysis of RNA Ends (PARE) libraries for the study of cleaved miRNA targets and the RNA degradome. Nature Protocols. 4: 356-62. PMID 19247285 DOI: 10.1038/Nprot.2009.8  0.324
2009 Yassour M, Kaplan T, Fraser HB, Levin JZ, Pfiffner J, Adiconis X, Schroth G, Luo S, Khrebtukova I, Gnirke A, Nusbaum C, Thompson DA, Friedman N, Regev A. Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing. Proceedings of the National Academy of Sciences of the United States of America. 106: 3264-9. PMID 19208812 DOI: 10.1073/Pnas.0812841106  0.34
2002 Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598  0.342
2002 Angermayr M, Oechsner U, Gregor K, Schroth GP, Bandlow W. Transcription initiation in vivo without classical transactivators: DNA kinks flanking the core promoter of the housekeeping yeast adenylate kinase gene, AKY2, position nucleosomes and constitutively activate transcription. Nucleic Acids Research. 30: 4199-207. PMID 12364598  0.342
2001 Kwok Y, Zhang W, Schroth GP, Liang CH, Alexi N, Bruice TW. Allosteric interaction of minor groove binding ligands with UL9-DNA complexes Biochemistry. 40: 12628-12638. PMID 11601987 DOI: 10.1021/Bi0109865  0.351
1999 Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/Nar/27.2.543  0.787
1999 Eichman BF, Schroth GP, Basham BE, Ho PS. The intrinsic structure and stability of out-of-alternation base pairs in Z-DNA. Nucleic Acids Research. 27: 543-50. PMID 9862978 DOI: 10.1093/Nar/27.2.543  0.787
1996 Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i  0.591
1996 Howell ML, Schroth GP, Ho PS. Sequence-dependent effects of spermine on the thermodynamics of the B-DNA to Z-DNA transition. Biochemistry. 35: 15373-82. PMID 8952489 DOI: 10.1021/bi961881i  0.591
1996 Brown ML, Schroth GP, Gottesfeld JM, Bazett-Jones DP. Protein and DNA requirements for the transcription factor IIIA-induced distortion of the 5 S rRNA gene promoter Journal of Molecular Biology. 262: 600-614. PMID 8876641 DOI: 10.1006/Jmbi.1996.0539  0.466
1995 Yaneva J, Schroth GP, Van Holde KE, Zlatanova J. High-affinity binding sites for histone H1 in plasmid DNA Proceedings of the National Academy of Sciences of the United States of America. 92: 7060-7064. PMID 7624369 DOI: 10.1073/pnas.92.15.7060  0.326
1995 Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/Pnas.92.14.6464  0.806
1995 Basham B, Schroth GP, Ho PS. An A-DNA triplet code: thermodynamic rules for predicting A- and B-DNA. Proceedings of the National Academy of Sciences of the United States of America. 92: 6464-8. PMID 7604014 DOI: 10.1073/Pnas.92.14.6464  0.806
1995 Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/Jmbi.1995.0336  0.806
1995 Mooers BH, Schroth GP, Baxter WW, Ho PS. Alternating and non-alternating dG-dC hexanucleotides crystallize as canonical A-DNA. Journal of Molecular Biology. 249: 772-84. PMID 7602589 DOI: 10.1006/Jmbi.1995.0336  0.806
1995 Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/Nar/23.11.1977  0.583
1995 Schroth GP, Ho PS. Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA. Nucleic Acids Research. 23: 1977-83. PMID 7596826 DOI: 10.1093/Nar/23.11.1977  0.583
1993 Hong L, Schroth GP, Matthews HR, Yau P, Bradbury EM. Studies of the DNA binding properties of histone H4 amino terminus. Thermal denaturation studies reveal that acetylation markedly reduces the binding constant of the H4 'tail' to DNA Journal of Biological Chemistry. 268: 305-314. PMID 8416938  0.532
1993 Schroth GP, Kagawa TF, Ho PS. Structure and thermodynamics of nonalternating C.G base pairs in Z-DNA: the 1.3-A crystal structure of the asymmetric hexanucleotide d(m5CGGGm5CG).d(m5CGCCm5CG). Biochemistry. 32: 13381-92. PMID 8257675 DOI: 10.2210/Pdb145D/Pdb  0.799
1993 Schroth GP, Kagawa TK, Tseng K, Basham B, Shing Ho P. The crystallization of deoxyoligonucleotides Acta Crystallographica Section a Foundations of Crystallography. 49: c134-c134. DOI: 10.1107/S0108767378096130  0.718
1992 Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856  0.606
1992 Schroth GP, Chou PJ, Ho PS. Mapping Z-DNA in the human genome. Computer-aided mapping reveals a nonrandom distribution of potential Z-DNA-forming sequences in human genes. The Journal of Biological Chemistry. 267: 11846-55. PMID 1601856  0.606
1992 Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826  0.768
1992 Schroth GP, Siino JS, Cooney CA, Th'ng JP, Ho PS, Bradbury EM. Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility. The Journal of Biological Chemistry. 267: 9958-64. PMID 1577826  0.768
1991 Schroth GP, Gottesfeld JM, Bradbury EM. TFIIIA induced DNA bending: Effect of low ionic strength electrophoresis buffer conditions Nucleic Acids Research. 19: 511-516. PMID 2011525 DOI: 10.1093/Nar/19.3.511  0.627
1991 Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069 DOI: 10.1126/Science.1948069  0.79
1991 Ho PS, Kagawa TF, Tseng KH, Schroth GP, Zhou GW. Prediction of a crystallization pathway for Z-DNA hexanucleotides. Science (New York, N.Y.). 254: 1003-6. PMID 1948069 DOI: 10.1126/Science.1948069  0.79
1990 Schroth GP, Yau P, Imai BS, Gatewood JM, Bradbury EM. A NMR study of mobility in the histone octamer Febs Letters. 268: 117-120. PMID 2384147 DOI: 10.1016/0014-5793(90)80987-T  0.737
1990 Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113  0.445
1990 Gatewood JM, Schroth GP, Schmid CW, Bradbury EM. Zinc-induced secondary structure transitions in human sperm protamines. The Journal of Biological Chemistry. 265: 20667-72. PMID 2243113  0.445
1989 Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984  0.652
1989 Cook GR, Minch M, Schroth GP, Bradbury EM. Analysis of the binding of high mobility group protein 17 to the nucleosome core particle by 1H NMR spectroscopy. The Journal of Biological Chemistry. 264: 1799-803. PMID 2912984  0.652
1989 Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487A0  0.719
1989 Schroth GP, Cook GR, Bradbury EM, Gottesfeld JM. Transcription factor IIIA induced bending of the Xenopus somatic 5S gene promoter. Nature. 340: 487-8. PMID 2755511 DOI: 10.1038/340487A0  0.719
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