53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Park JH, Gorky J, Ogunnaike B, Vadigepalli R, Schwaber JS. Investigating the Effects of Brainstem Neuronal Adaptation on Cardiovascular Homeostasis. Frontiers in Neuroscience. 14: 470. PMID 32508573 DOI: 10.3389/fnins.2020.00470  1
2020 Staehle MM, O'Sullivan S, Vadigepalli R, Kernan KF, Gonye GE, Ogunnaike BA, Schwaber JS. Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. Frontiers in Neuroscience. 14: 375. PMID 32477043 DOI: 10.3389/fnins.2020.00375  1
2020 Achanta S, Gorky J, Leung C, Moss A, Robbins S, Eisenman L, Chen J, Tappan S, Heal M, Farahani N, Huffman T, England S, Cheng ZJ, Vadigepalli R, Schwaber JS. A Comprehensive Integrated Anatomical and Molecular Atlas of Rat Intrinsic Cardiac Nervous System. Iscience. 101140. PMID 32460006 DOI: 10.1016/j.isci.2020.101140  1
2020 O'Sullivan SJ, Reyes BAS, Vadigepalli R, Van Bockstaele EJ, Schwaber JS. Combining Laser Capture Microdissection and Microfluidic qPCR to Analyze Transcriptional Profiles of Single Cells: A Systems Biology Approach to Opioid Dependence. Journal of Visualized Experiments : Jove. PMID 32202523 DOI: 10.3791/60612  1
2019 O'Sullivan SJ, Malahias E, Park J, Srivastava A, Reyes BAS, Gorky J, Vadigepalli R, Van Bockstaele EJ, Schwaber JS. Single-Cell Glia and Neuron Gene Expression in the Central Amygdala in Opioid Withdrawal Suggests Inflammation With Correlated Gut Dysbiosis. Frontiers in Neuroscience. 13: 665. PMID 31333398 DOI: 10.3389/fnins.2019.00665  1
2018 Verma A, Antony AN, Ogunnaike BA, Hoek JB, Vadigepalli R. Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules. Frontiers in Physiology. 9: 1377. PMID 30337879 DOI: 10.3389/fphys.2018.01377  1
2018 Cook D, Achanta S, Hoek JB, Ogunnaike BA, Vadigepalli R. Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics. Bmc Systems Biology. 12: 86. PMID 30285726 DOI: 10.1186/s12918-018-0605-7  1
2018 Achanta S, Verma A, Srivastava A, Nilakantan H, Hoek JB, Vadigepalli R. Single cell gene expression analysis identifies chronic alcoholmediated shift in hepatocyte molecular states after partial hepatectomy. Gene Expression. PMID 30189915 DOI: 10.3727/105221618X15361728786767  1
2018 Vadigepalli R, Hoek JB. Alcohol and epigenetic regulation: Do the products of alcohol metabolism drive epigenetic control of gene expression in alcohol-related disorders? Alcoholism, Clinical and Experimental Research. PMID 29532481 DOI: 10.1111/acer.13630  1
2017 Anderson WD, DeCicco D, Schwaber JS, Vadigepalli R. A data-driven modeling approach to identify disease-specific multi-organ networks driving physiological dysregulation. Plos Computational Biology. 13: e1005627. PMID 28732007 DOI: 10.1371/journal.pcbi.1005627  1
2016 Park J, Zhu H, O'Sullivan S, Ogunnaike BA, Weaver DR, Schwaber JS, Vadigepalli R. Single-Cell Transcriptional Analysis Reveals Novel Neuronal Phenotypes and Interaction Networks Involved in the Central Circadian Clock. Frontiers in Neuroscience. 10: 481. PMID 27826225 DOI: 10.3389/fnins.2016.00481  1
2016 Kuttippurathu L, Patra B, Cook D, Hoek JB, Vadigepalli R. Pattern analysis uncovers a chronic ethanol-induced disruption of the switch-like dynamics of C/EBP-β and C/EBP-α genome-wide binding during liver regeneration. Physiological Genomics. physiolgenomics.0009. PMID 27815535 DOI: 10.1152/physiolgenomics.00097.2016  1
2016 Juskeviciute E, Dippold RP, Antony AN, Swarup A, Vadigepalli R, Hoek JB. Inhibition of miR-21 rescues liver regeneration after partial hepatectomy in ethanol-fed rats. American Journal of Physiology. Gastrointestinal and Liver Physiology. ajpgi.00292.2016. PMID 27634014 DOI: 10.1152/ajpgi.00292.2016  1
2016 Boxman J, Sagy N, Achanta S, Vadigepalli R, Nachman I. Integrated live imaging and molecular profiling of embryoid bodies reveals a synchronized progression of early differentiation. Scientific Reports. 6: 31623. PMID 27530599 DOI: 10.1038/srep31623  1
2016 Hendy EB, Marvar PJ, Cruise T, Walas D, DeCicco D, Vadigepalli R, Schwaber JS, Waki H, Murphy D, Paton JF. Systemic leukotriene b4 receptor antagonism lowers arterial blood pressure and improves autonomic function in the spontaneously hypertensive rat. The Journal of Physiology. PMID 27230966 DOI: 10.1113/JP272065  1
2016 Verma A, Makadia H, Hoek J, Ogunnaike B, Vadigepalli R. Computational modeling of Spatio-temporal Ca2+ Signal Propagation along Hepatocyte Cords. Ieee Transactions On Bio-Medical Engineering. PMID 27076052 DOI: 10.1109/TBME.2016.2550045  1
2016 Kuttippurathu L, Juskeviciute E, Dippold RP, Hoek JB, Vadigepalli R. A novel comparative pattern analysis approach identifies chronic alcohol mediated dysregulation of transcriptomic dynamics during liver regeneration. Bmc Genomics. 17: 260. PMID 27012785 DOI: 10.1186/s12864-016-2492-x  1
2016 Kuttippurathu L, Patra B, Hoek JB, Vadigepalli R. A novel comparative pattern count analysis reveals a chronic ethanol-induced dynamic shift in immediate early NF-κB genome-wide promoter binding during liver regeneration. Molecular Biosystems. 12: 1037-56. PMID 26847025 DOI: 10.1039/c5mb00740b  1
2015 Anderson WD, Makadia HK, Vadigepalli R. Molecular variability elicits a tunable switch with discrete neuromodulatory response phenotypes. Journal of Computational Neuroscience. PMID 26621106 DOI: 10.1007/s10827-015-0584-2  1
2015 Cook D, Ogunnaike BA, Vadigepalli R. Systems analysis of non-parenchymal cell modulation of liver repair across multiple regeneration modes. Bmc Systems Biology. 9: 71. PMID 26493454 DOI: 10.1186/s12918-015-0220-9  1
2015 Makadia HK, Schwaber JS, Vadigepalli R. Intracellular Information Processing through Encoding and Decoding of Dynamic Signaling Features. Plos Computational Biology. 11: e1004563. PMID 26491963 DOI: 10.1371/journal.pcbi.1004563  1
2015 Nilakantan H, Kuttippurathu L, Parrish A, Hoek JB, Vadigepalli R. In Vivo Zonal Variation and Liver Cell-Type Specific NF-κB Localization after Chronic Adaptation to Ethanol and following Partial Hepatectomy. Plos One. 10: e0140236. PMID 26452159 DOI: 10.1371/journal.pone.0140236  1
2015 Anderson WD, Makadia HK, Greenhalgh AD, Schwaber JS, David S, Vadigepalli R. Computational modeling of cytokine signaling in microglia. Molecular Biosystems. 11: 3332-46. PMID 26440115 DOI: 10.1039/c5mb00488h  1
2015 Cook DJ, Patra B, Kuttippurathu L, Hoek JB, Vadigepalli R. A novel, dynamic pattern-based analysis of NF-κB binding during the priming phase of liver regeneration reveals switch-like functional regulation of target genes. Frontiers in Physiology. 6: 189. PMID 26217230 DOI: 10.3389/fphys.2015.00189  1
2015 DeCicco D, Zhu H, Brureau A, Schwaber JS, Vadigepalli R. MicroRNA network changes in the brain stem underlie the development of hypertension. Physiological Genomics. 47: 388-99. PMID 26126791 DOI: 10.1152/physiolgenomics.00047.2015  1
2015 Correnti JM, Cook D, Aksamitiene E, Swarup A, Ogunnaike B, Vadigepalli R, Hoek JB. Adiponectin fine-tuning of liver regeneration dynamics revealed through cellular network modelling. The Journal of Physiology. 593: 365-83. PMID 25630259 DOI: 10.1113/jphysiol.2014.284109  1
2015 Makadia HK, Anderson WD, Fey D, Sauter T, Schwaber JS, Vadigepalli R. Multiscale model of dynamic neuromodulation integrating neuropeptide-induced signaling pathway activity with membrane electrophysiology. Biophysical Journal. 108: 211-23. PMID 25564868 DOI: 10.1016/j.bpj.2014.11.1851  1
2015 Park J, Ogunnaike B, Schwaber J, Vadigepalli R. Identifying functional gene regulatory network phenotypes underlying single cell transcriptional variability. Progress in Biophysics and Molecular Biology. 117: 87-98. PMID 25433230 DOI: 10.1016/j.pbiomolbio.2014.11.004  1
2014 Park J, Brureau A, Kernan K, Starks A, Gulati S, Ogunnaike B, Schwaber J, Vadigepalli R. Inputs drive cell phenotype variability. Genome Research. 24: 930-41. PMID 24671852 DOI: 10.1101/gr.161802.113  1
2013 Telesco SE, Vadigepalli R, Radhakrishnan R. Molecular modeling of ErbB4/HER4 kinase in the context of the HER4 signaling network helps rationalize the effects of clinically identified HER4 somatic mutations on the cell phenotype. Biotechnology Journal. 8: 1452-64. PMID 24318637 DOI: 10.1002/biot.201300022  1
2013 Ogony JW, Malahias E, Vadigepalli R, Anni H. Ethanol alters the balance of Sox2, Oct4, and Nanog expression in distinct subpopulations during differentiation of embryonic stem cells. Stem Cells and Development. 22: 2196-210. PMID 23470161 DOI: 10.1089/scd.2012.0513  1
2013 Freeman K, Staehle MM, Vadigepalli R, Gonye GE, Ogunnaike BA, Hoek JB, Schwaber JS. Coordinated dynamic gene expression changes in the central nucleus of the amygdala during alcohol withdrawal. Alcoholism, Clinical and Experimental Research. 37: E88-100. PMID 22827539 DOI: 10.1111/j.1530-0277.2012.01910.x  1
2013 Dippold RP, Vadigepalli R, Gonye GE, Patra B, Hoek JB. Chronic ethanol feeding alters miRNA expression dynamics during liver regeneration. Alcoholism, Clinical and Experimental Research. 37: E59-69. PMID 22823254 DOI: 10.1111/j.1530-0277.2012.01852.x  1
2012 Solomides CC, Evans BJ, Navenot JM, Vadigepalli R, Peiper SC, Wang ZX. MicroRNA profiling in lung cancer reveals new molecular markers for diagnosis. Acta Cytologica. 56: 645-54. PMID 23207443 DOI: 10.1159/000343473  1
2012 Buraschi S, Neill T, Owens RT, Iniguez LA, Purkins G, Vadigepalli R, Evans B, Schaefer L, Peiper SC, Wang ZX, Iozzo RV. Decorin protein core affects the global gene expression profile of the tumor microenvironment in a triple-negative orthotopic breast carcinoma xenograft model. Plos One. 7: e45559. PMID 23029096 DOI: 10.1371/journal.pone.0045559  1
2012 Dippold RP, Vadigepalli R, Gonye GE, Hoek JB. Chronic ethanol feeding enhances miR-21 induction during liver regeneration while inhibiting proliferation in rats. American Journal of Physiology. Gastrointestinal and Liver Physiology. 303: G733-43. PMID 22790595 DOI: 10.1152/ajpgi.00019.2012  1
2012 Zhu H, Vadigepalli R, Rafferty R, Gonye GE, Weaver DR, Schwaber JS. Integrative gene regulatory network analysis reveals light-induced regional gene expression phase shift programs in the mouse suprachiasmatic nucleus. Plos One. 7: e37833. PMID 22662235 DOI: 10.1371/journal.pone.0037833  1
2012 Schneider JS, Anderson DW, Talsania K, Mettil W, Vadigepalli R. Effects of developmental lead exposure on the hippocampal transcriptome: influences of sex, developmental period, and lead exposure level. Toxicological Sciences : An Official Journal of the Society of Toxicology. 129: 108-25. PMID 22641619 DOI: 10.1093/toxsci/kfs189  1
2012 Freeman K, Brureau A, Vadigepalli R, Staehle MM, Brureau MM, Gonye GE, Hoek JB, Hooper DC, Schwaber JS. Temporal changes in innate immune signals in a rat model of alcohol withdrawal in emotional and cardiorespiratory homeostatic nuclei. Journal of Neuroinflammation. 9: 97. PMID 22626265 DOI: 10.1186/1742-2094-9-97  1
2012 Freeman K, Staehle MM, Gümüş ZH, Vadigepalli R, Gonye GE, Nichols CN, Ogunnaike BA, Hoek JB, Schwaber JS. Rapid temporal changes in the expression of a set of neuromodulatory genes during alcohol withdrawal in the dorsal vagal complex: molecular evidence of homeostatic disturbance. Alcoholism, Clinical and Experimental Research. 36: 1688-700. PMID 22486438 DOI: 10.1111/j.1530-0277.2012.01791.x  1
2012 Vadigepalli R, Gonye GE, Paton JF, Schwaber JS. Adaptive transcriptional dynamics of A2 neurons and central cardiovascular control pathways. Experimental Physiology. 97: 462-8. PMID 22002872 DOI: 10.1113/expphysiol.2011.059790  1
2010 Miller GM, Ogunnaike BA, Schwaber JS, Vadigepalli R. Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network. Bmc Systems Biology. 4: 171. PMID 21167049 DOI: 10.1186/1752-0509-4-171  1
2008 Juskeviciute E, Vadigepalli R, Hoek JB. Temporal and functional profile of the transcriptional regulatory network in the early regenerative response to partial hepatectomy in the rat. Bmc Genomics. 9: 527. PMID 18990226 DOI: 10.1186/1471-2164-9-527  1
2008 Pratt CH, Vadigepalli R, Chakravarthula P, Gonye GE, Philp NJ, Grunwald GB. Transcriptional regulatory network analysis during epithelial-mesenchymal transformation of retinal pigment epithelium. Molecular Vision. 14: 1414-28. PMID 18682805  1
2008 Khan RL, Vadigepalli R, McDonald MK, Rogers RF, Gao GR, Schwaber JS. Dynamic transcriptomic response to acute hypertension in the nucleus tractus solitarius. American Journal of Physiology. Regulatory, Integrative and Comparative Physiology. 295: R15-27. PMID 18434436 DOI: 10.1152/ajpregu.00152.2008  1
2007 Gonye GE, Chakravarthula P, Schwaber JS, Vadigepalli R. From promoter analysis to transcriptional regulatory network prediction using PAINT. Methods in Molecular Biology (Clifton, N.J.). 408: 49-68. PMID 18314577 DOI: 10.1007/978-1-59745-547-3_4  1
2006 Vadigepalli R, Hao H, Miller GM, Liu H, Schwaber JS. Epidermal growth factor receptor-induced circadian-time-dependent gene regulation in suprachiasmatic nucleus. Neuroreport. 17: 1437-41. PMID 16932154 DOI: 10.1097/01.wnr.0000227989.15422.71  1
2006 Zak DE, Hao H, Vadigepalli R, Miller GM, Ogunnaike BA, Schwaber JS. Systems analysis of circadian time-dependent neuronal epidermal growth factor receptor signaling. Genome Biology. 7: R48. PMID 16784547 DOI: 10.1186/gb-2006-7-6-r48  1
2006 Saban MR, Hellmich HL, Turner M, Nguyen NB, Vadigepalli R, Dyer DW, Hurst RE, Centola M, Saban R. The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa. Bmc Physiology. 6: 1. PMID 16420690 DOI: 10.1186/1472-6793-6-1  1
2005 Covarrubias MY, Khan RL, Vadigepalli R, Hoek JB, Schwaber JS. Chronic alcohol exposure alters transcription broadly in a key integrative brain nucleus for homeostasis: the nucleus tractus solitarius. Physiological Genomics. 24: 45-58. PMID 16189278 DOI: 10.1152/physiolgenomics.00184.2005  1
2004 Addya S, Keller MA, Delgrosso K, Ponte CM, Vadigepalli R, Gonye GE, Surrey S. Erythroid-induced commitment of K562 cells results in clusters of differentially expressed genes enriched for specific transcription regulatory elements. Physiological Genomics. 19: 117-30. PMID 15252187 DOI: 10.1152/physiolgenomics.00028.2004  1
2003 Zak DE, Pearson RK, Vadigepalli R, Gonye GE, Schwaber JS, Doyle FJ. Continuous-time identification of gene expression models. Omics : a Journal of Integrative Biology. 7: 373-86. PMID 14683610 DOI: 10.1089/153623103322637689  1
2003 Vadigepalli R, Chakravarthula P, Zak DE, Schwaber JS, Gonye GE. PAINT: a promoter analysis and interaction network generation tool for gene regulatory network identification. Omics : a Journal of Integrative Biology. 7: 235-52. PMID 14583114 DOI: 10.1089/153623103322452378  1
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