| Year |
Citation |
Score |
| 2023 |
Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, ... ... Lee D, et al. Author Correction: Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. PMID 36697832 DOI: 10.1038/s41586-022-05599-9 |
0.392 |
|
| 2021 |
Liu J, Spakowicz DJ, Ash GI, Hoyd R, Ahluwalia R, Zhang A, Lou S, Lee D, Zhang J, Presley C, Greene A, Stults-Kolehmainen M, Nally LM, Baker JS, Fucito LM, et al. Bayesian structural time series for biomedical sensor data: A flexible modeling framework for evaluating interventions. Plos Computational Biology. 17: e1009303. PMID 34424894 DOI: 10.1371/journal.pcbi.1009303 |
0.349 |
|
| 2021 |
Chen Z, Zhang J, Liu J, Dai Y, Lee D, Min MR, Xu M, Gerstein M. DECODE: a Deep-learning framework for Condensing enhancers and refining boundaries with large-scale functional assays. Bioinformatics (Oxford, England). 37: i280-i288. PMID 34252960 DOI: 10.1093/bioinformatics/btab283 |
0.392 |
|
| 2021 |
Chen Z, Zhang J, Liu J, Zhang Z, Zhu J, Lee D, Xu M, Gerstein M. SCAN-ATAC-Sim: a scalable and efficient method for simulating single-cell ATAC-seq data from bulk-tissue experiments. Bioinformatics (Oxford, England). PMID 33471102 DOI: 10.1093/bioinformatics/btaa1039 |
0.383 |
|
| 2020 |
Lee D, Shi M, Moran J, Wall M, Zhang J, Liu J, Fitzgerald D, Kyono Y, Ma L, White KP, Gerstein M. STARRPeaker: uniform processing and accurate identification of STARR-seq active regions. Genome Biology. 21: 298. PMID 33292397 DOI: 10.1186/s13059-020-02194-x |
0.549 |
|
| 2020 |
Zhang J, Liu J, McGillivray P, Yi C, Lochovsky L, Lee D, Gerstein M. NIMBus: a negative binomial regression based Integrative Method for mutation Burden Analysis. Bmc Bioinformatics. 21: 474. PMID 33092526 DOI: 10.1186/s12859-020-03758-1 |
0.443 |
|
| 2020 |
Zhang J, Lee D, Dhiman V, Jiang P, Xu J, McGillivray P, Yang H, Liu J, Meyerson W, Clarke D, Gu M, Li S, Lou S, Xu J, Lochovsky L, et al. An integrative ENCODE resource for cancer genomics. Nature Communications. 11: 3696. PMID 32728046 DOI: 10.1038/S41467-020-14743-W |
0.681 |
|
| 2020 |
Zhang J, Liu J, Lee D, Feng JJ, Lochovsky L, Lou S, Rutenberg-Schoenberg M, Gerstein M. RADAR: annotation and prioritization of variants in the post-transcriptional regulome of RNA-binding proteins. Genome Biology. 21: 151. PMID 32727537 DOI: 10.1186/S13059-020-01979-4 |
0.532 |
|
| 2020 |
Lou S, Li T, Kong X, Zhang J, Liu J, Lee D, Gerstein M. TopicNet: a framework for measuring transcriptional regulatory network change. Bioinformatics (Oxford, England). 36: i474-i481. PMID 32657410 DOI: 10.1093/Bioinformatics/Btaa403 |
0.627 |
|
| 2020 |
Zhang J, Liu J, Lee D, Lou S, Chen Z, Gürsoy G, Gerstein M. DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring. Bmc Bioinformatics. 21: 281. PMID 32615918 DOI: 10.1186/S12859-020-03605-3 |
0.662 |
|
| 2020 |
Lee D, Zhang J, Liu J, Gerstein M. Epigenome-based splicing prediction using a recurrent neural network. Plos Computational Biology. 16: e1008006. PMID 32584815 DOI: 10.1371/Journal.Pcbi.1008006 |
0.513 |
|
| 2020 |
Rheinbay E, Nielsen MM, Abascal F, Wala JA, Shapira O, Tiao G, Hornshøj H, Hess JM, Juul RI, Lin Z, Feuerbach L, Sabarinathan R, Madsen T, Kim J, Mularoni L, ... ... Lee D, et al. Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nature. 578: 102-111. PMID 32025015 DOI: 10.1038/s41586-020-1965-x |
0.436 |
|
| 2019 |
Wang B, Yan C, Lou S, Emani P, Li B, Xu M, Kong X, Meyerson W, Yang YT, Lee D, Gerstein M. Building a Hybrid Physical-Statistical Classifier for Predicting the Effect of Variants Related to Protein-Drug Interactions. Structure (London, England : 1993). PMID 31279629 DOI: 10.1016/J.Str.2019.06.001 |
0.579 |
|
| 2019 |
Moro A, Driscoll TP, Boraas LC, Armero W, Kasper DM, Baeyens N, Jouy C, Mallikarjun V, Swift J, Ahn SJ, Lee D, Zhang J, Gu M, Gerstein M, Schwartz M, et al. MicroRNA-dependent regulation of biomechanical genes establishes tissue stiffness homeostasis. Nature Cell Biology. PMID 30742093 DOI: 10.1038/S41556-019-0272-Y |
0.472 |
|
| 2017 |
Kasper DM, Moro A, Ristori E, Narayanan A, Hill-Teran G, Fleming E, Moreno-Mateos M, Vejnar CE, Zhang J, Lee D, Gu M, Gerstein M, Giraldez A, Nicoli S. MicroRNAs Establish Uniform Traits during the Architecture of Vertebrate Embryos. Developmental Cell. 40: 552-565.e5. PMID 28350988 DOI: 10.1016/J.Devcel.2017.02.021 |
0.417 |
|
| 2015 |
Jung H, Lee D, Lee J, Park D, Kim YJ, Park WY, Hong D, Park PJ, Lee E. Intron retention is a widespread mechanism of tumor-suppressor inactivation. Nature Genetics. PMID 26437032 DOI: 10.1038/Ng.3414 |
0.382 |
|
| 2013 |
Lee D, Lee GK, Yoon KA, Lee JS. Pathway-based analysis using genome-wide association data from a Korean non-small cell lung cancer study. Plos One. 8: e65396. PMID 23762359 DOI: 10.1371/Journal.Pone.0065396 |
0.351 |
|
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