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Daniel Rigden, Ph.D - Publications

Affiliations: 
Institute of Integrative Biology University of Liverpool, Liverpool, England, United Kingdom 
Area:
Protein Bioinformatics
Website:
http://pcwww.liv.ac.uk/~drigden/
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15 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Lebedev A, Vagin A, McNicholas S, Thomas J, Uski V, Rigden D, Keegan R. Molecular replacement model preparation and its automation in MoRDa and MrBUMP Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319093987  0.338
2019 Simpkin A, Simkovic F, Thomas J, Savko M, Lebedev A, Uski V, Wojdyr M, Ballard C, Shepard W, Rigden D, Keegan R. SIMBAD: structure-based search model identification for molecular replacement using the PDB Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319093793  0.384
2019 Rigden D, Simpkin A, Thomas J, Simkovic F, Keegan R. Molecular replacement using structure predictions from new-generation databases Acta Crystallographica Section A. 75. DOI: 10.1107/S2053273319093732  0.351
2018 Simpkin AJ, Simkovic F, Thomas JMH, Savko M, Lebedev A, Uski V, Ballard C, Wojdyr M, Wu R, Sanishvili R, Xu Y, Lisa MN, Buschiazzo A, Shepard W, Rigden DJ, et al. SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallographica. Section D, Structural Biology. 74: 595-605. PMID 29968670 DOI: 10.1107/S2053273317085709  0.352
2018 Simpkin A, Simkovic F, Thomas J, Savko M, Ballard C, Wojdyr M, Shepard W, Rigden D, Keegan R. Identification of contaminants with SIMBAD: a sequence-independent molecular replacement pipeline Acta Crystallographica Section A. 74. DOI: 10.1107/S2053273318092641  0.333
2018 Keegan R, Rigden D, McNicholas S, Krissinel E, Thomas J, Simpkin A, Simkovic F, Winn M, Wilson K. Ensembling for molecular replacement: making the most of your distant homologues Acta Crystallographica Section a Foundations and Advances. 74: e176-e176. DOI: 10.1107/S2053273318092586  0.313
2017 Simkovic F, Thomas J, Mayans O, Rigden D. Unconventional molecular replacement for helical transmembrane proteins using AMPLE Acta Crystallographica Section A. 73. DOI: 10.1107/S2053273317086922  0.363
2016 Simkovic F, Thomas JM, Keegan RM, Winn MD, Mayans O, Rigden DJ. Residue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds. Iucrj. 3: 259-70. PMID 27437113 DOI: 10.1107/S2052252516008113  0.302
2014 Thomas J, Keegan R, Bibby J, Winn M, Mayans O, Rigden D. "Rapid molecular replacement of coiled-coil and transmembrane proteins with AMPLE". Acta Crystallographica Section A. 70. DOI: 10.1107/S2053273314096521  0.355
2013 Keegan R, Bibby J, Thomas J, Rigden D, Winn M. AMPLE- usingde novoprotein structure modelling techniques to create and enhance search models for use in molecular replacement Acta Crystallographica Section A. 69: 44-44. DOI: 10.1107/S0108767313099613  0.334
2011 Ayres CF, Ayres C, Müller P, Dyer N, Wilding CS, Wilding C, Rigden DJ, Rigden D, Donnelly MJ, Donnelly M. Comparative genomics of the anopheline glutathione S-transferase epsilon cluster. Plos One. 6: e29237. PMID 22206003 DOI: 10.1371/Journal.Pone.0029237  0.307
2011 Rigden D, Bibby J, Mayans O, Keegan R, Winn M. Structure solution by molecular replacement using ab initio protein models Acta Crystallographica Section A. 67: 134-135. DOI: 10.1107/S0108767311096693  0.374
2009 Winn M, Rigden D, Keegan R. Molecular replacement usingab initiopolyalanine models generated withROSETTA Acta Crystallographica Section A. 65. DOI: 10.1107/S0108767309096664  0.341
1996 Nairn J, Smith S, Allison P, Rigden D, Fothergill-Gilmore L, Price N. Erratum to “Cloning and sequencing of a gene encoding pyruvate kinase fromSchizosaccharomyces pombe: implications for quaternary structure and regulation of the enzyme” [FEMS Microbiol. Lett. 134 (1995) 221–226] Fems Microbiology Letters. 136: 329-329. DOI: 10.1111/J.1574-6968.1996.Tb08069.X  0.311
1995 Nairn J, Smith S, Allison PJ, Rigden D, Fothergill-Gilmore LA, Price NC. Cloning and sequencing of a gene encoding pyruvate kinase from Schizosaccharomyces pombe; implications for quaternary structure and regulation of the enzyme. Fems Microbiology Letters. 134: 221-6. PMID 8586271 DOI: 10.1111/J.1574-6968.1995.Tb07941.X  0.352
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